Wall clock time and date at job start Tue Mar 31 2020 06:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 N 1.29941 * 126.28256 * 59.68866 * 4 2 1 6 6 O 1.21299 * 110.24830 * 179.84400 * 5 4 2 7 7 C 1.33643 * 109.81269 * 0.42271 * 6 5 4 8 8 C 1.50695 * 126.55384 * 179.75625 * 7 6 5 9 9 H 1.09003 * 109.47349 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.47496 * 299.98077 * 8 7 6 11 11 N 1.46503 * 109.47237 * 59.97959 * 8 7 6 12 12 C 1.35308 * 125.87094 * 274.71718 * 11 8 7 13 13 C 1.35349 * 106.17727 * 179.90027 * 12 11 8 14 14 C 1.50698 * 126.74918 * 180.12073 * 13 12 11 15 15 C 1.50704 * 109.46873 * 125.29710 * 14 13 12 16 16 H 1.08005 * 119.99722 * 0.02562 * 15 14 13 17 17 C 1.37882 * 120.00301 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99818 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00244 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47174 * 59.99972 * 19 17 15 21 21 H 1.48498 * 109.47350 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47142 * 300.00281 * 19 17 15 23 23 N 1.33766 * 106.49560 * 0.35427 * 13 12 11 24 24 N 1.28628 * 108.88692 * 359.77173 * 23 13 12 25 25 N 1.31133 * 106.89627 * 359.74205 * 7 6 5 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.09003 * 109.46839 * 59.99667 * 10 8 7 34 34 H 1.09001 * 109.47323 * 180.02562 * 10 8 7 35 35 H 1.09002 * 109.47087 * 300.00026 * 10 8 7 36 36 H 1.08009 * 126.90768 * 0.02562 * 12 11 8 37 37 H 1.08994 * 109.47538 * 245.29331 * 14 13 12 38 38 H 1.08997 * 109.47531 * 5.30456 * 14 13 12 39 39 H 0.96991 * 119.99759 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 7 1.7902 -0.3780 -2.4631 6 8 2.3408 -1.1480 -3.2215 7 6 2.9990 -2.0784 -2.5235 8 6 3.8061 -3.2194 -3.0871 9 1 4.2231 -3.8080 -2.2699 10 6 2.9035 -4.1072 -3.9462 11 7 4.8947 -2.6877 -3.9108 12 6 4.8055 -2.3428 -5.2162 13 6 6.0339 -1.9019 -5.5745 14 6 6.4509 -1.3995 -6.9327 15 6 7.0530 -0.0247 -6.7966 16 1 7.1268 0.4387 -5.8238 17 6 7.5107 0.6413 -7.9139 18 7 7.4213 0.0768 -9.0984 19 14 8.2576 2.3450 -7.7451 20 1 9.4448 2.2791 -6.8554 21 1 8.6684 2.8403 -9.0835 22 1 7.2530 3.2705 -7.1623 23 7 6.8064 -2.0047 -4.4873 24 7 6.1018 -2.4733 -3.5186 25 7 2.8087 -1.8084 -1.2545 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 2.4865 -3.5186 -4.7634 34 1 3.4872 -4.9328 -4.3534 35 1 2.0935 -4.5029 -3.3333 36 1 3.9296 -2.4049 -5.8450 37 1 7.1884 -2.0783 -7.3606 38 1 5.5794 -1.3513 -7.5856 39 1 7.7429 0.5454 -9.8843 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600971902.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:51 Heat of formation + Delta-G solvation = 156.868432 kcal Electronic energy + Delta-G solvation = -22832.189890 eV Core-core repulsion = 19394.588662 eV Total energy + Delta-G solvation = -3437.601227 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -45.88008 -42.71597 -37.18326 -36.64005 -34.56703 -33.45439 -31.85760 -31.22507 -30.19964 -27.67734 -27.58847 -25.52993 -24.86655 -23.58661 -23.38182 -21.63932 -20.63540 -19.81077 -18.38049 -17.95383 -16.85201 -16.60067 -16.16202 -15.40530 -14.93405 -14.62187 -14.52072 -14.22841 -13.81624 -13.50824 -13.02401 -12.91951 -12.66342 -12.62626 -12.19944 -12.08586 -12.03919 -11.96317 -11.75931 -11.55452 -11.48479 -11.18632 -11.07600 -10.74601 -10.70128 -10.30009 -10.14414 -9.77848 -9.64004 -9.37493 -8.47389 -8.20961 -6.00089 -4.00759 0.74303 1.79885 1.93136 2.50830 2.55975 3.22505 3.35948 3.38793 3.41568 3.48669 3.69293 4.13122 4.30972 4.50804 4.54355 4.62139 4.64490 4.87237 4.96105 5.13186 5.18481 5.22826 5.32508 5.36790 5.38664 5.42733 5.54150 5.57984 5.64994 5.72335 5.81015 5.90519 5.96999 6.13944 6.93879 7.03215 7.49321 7.58652 7.87226 7.97547 8.34584 9.01815 9.15274 9.62190 11.10994 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016384 B = 0.004020 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.605195 B = 6963.597091 C = 8041.329537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.003 4.003 3 C -0.148 4.148 4 C 0.174 3.826 5 N -0.369 5.369 6 O 0.096 5.904 7 C 0.162 3.838 8 C 0.253 3.747 9 H 0.152 0.848 10 C -0.166 4.166 11 N -0.314 5.314 12 C -0.073 4.073 13 C 0.040 3.960 14 C 0.092 3.908 15 C -0.506 4.506 16 H 0.058 0.942 17 C 0.059 3.941 18 N -0.898 5.898 19 Si 0.896 3.104 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.278 1.278 23 N -0.249 5.249 24 N -0.100 5.100 25 N -0.460 5.460 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.186 0.814 37 H 0.041 0.959 38 H 0.038 0.962 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.351 -6.664 15.485 23.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 C -0.206 4.206 4 C -0.099 4.099 5 N -0.073 5.073 6 O 0.035 5.965 7 C -0.061 4.061 8 C 0.148 3.852 9 H 0.170 0.830 10 C -0.224 4.224 11 N -0.111 5.111 12 C -0.220 4.220 13 C -0.096 4.096 14 C 0.053 3.947 15 C -0.544 4.544 16 H 0.076 0.924 17 C -0.142 4.142 18 N -0.537 5.537 19 Si 0.724 3.276 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.204 1.204 23 N -0.117 5.117 24 N -0.078 5.078 25 N -0.194 5.194 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.121 0.879 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.203 0.797 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.789 -6.058 16.695 23.764 hybrid contribution -0.328 0.939 -0.869 1.321 sum -16.116 -5.119 15.826 23.160 Atomic orbital electron populations 1.21856 0.92730 1.02549 1.03143 1.19595 0.96455 0.95550 0.90736 1.21872 1.01820 0.93768 1.03122 1.25899 0.96607 0.92670 0.94755 1.74615 1.16769 1.13073 1.02848 1.85353 1.46748 1.29317 1.35065 1.28697 0.96379 0.94566 0.86448 1.19663 0.83587 0.86718 0.95267 0.83033 1.22280 0.99675 0.99903 1.00567 1.47146 1.09192 1.45788 1.08955 1.23381 1.02722 1.09995 0.85885 1.23088 0.89321 0.98478 0.98683 1.17759 0.97481 0.96182 0.83245 1.20986 1.39560 1.00234 0.93669 0.92415 1.24949 0.95921 0.98173 0.95197 1.69927 1.47359 1.38159 0.98249 0.86586 0.79798 0.84193 0.77061 1.20065 1.21242 1.20354 1.75103 1.25361 1.13605 0.97628 1.78317 0.88457 1.17936 1.23115 1.71872 1.16091 1.14012 1.17411 0.91761 0.90916 0.92275 0.87887 0.92067 0.91710 0.90876 0.89818 0.88744 0.89016 0.79700 0.94077 0.94336 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.18 37.16 0.34 -0.76 16 2 C 0.00 -0.03 3.39 -91.77 -0.31 -0.34 16 3 C -0.15 -1.35 9.17 37.15 0.34 -1.01 16 4 C 0.17 2.26 6.72 -156.37 -1.05 1.21 16 5 N -0.37 -5.37 12.16 30.90 0.38 -5.00 16 6 O 0.10 1.39 11.31 18.10 0.20 1.59 16 7 C 0.16 2.11 7.35 -13.06 -0.10 2.02 16 8 C 0.25 2.80 3.79 -69.08 -0.26 2.54 16 9 H 0.15 1.41 8.14 -51.93 -0.42 0.99 16 10 C -0.17 -1.18 8.81 37.16 0.33 -0.85 16 11 N -0.31 -5.03 3.24 -55.89 -0.18 -5.21 16 12 C -0.07 -1.27 10.60 -17.05 -0.18 -1.45 16 13 C 0.04 0.90 6.44 -82.78 -0.53 0.36 16 14 C 0.09 2.37 5.55 -29.03 -0.16 2.20 16 15 C -0.51 -14.59 9.09 -34.44 -0.31 -14.90 16 16 H 0.06 1.71 7.74 -52.48 -0.41 1.30 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.90 -26.48 13.29 55.43 0.74 -25.75 16 19 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 N -0.25 -5.83 12.40 33.29 0.41 -5.42 16 24 N -0.10 -2.01 13.16 60.35 0.79 -1.22 16 25 N -0.46 -6.21 11.55 -9.87 -0.11 -6.33 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.60 7.17 -51.93 -0.37 0.23 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.19 2.52 7.30 -52.48 -0.38 2.14 16 37 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.04 0.98 8.12 -51.93 -0.42 0.56 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 341.71 15.07 5.15 5.15 Total: -1.00 -34.55 341.71 -5.01 -39.56 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: -5.37 Total: -5.21 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -2.00 Total: -9.39 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: 2.02 Total: -48.92 kcal Atomic # 8 Polarization: 1.39 SS G_CDS: 0.20 Total: 1.59 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.55 -5.01 -39.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600971902.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.428 kcal (2) G-P(sol) polarization free energy of solvation -34.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds