Wall clock time and date at job start Tue Mar 31 2020 06:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 N 1.29941 * 126.28256 * 59.68866 * 4 2 1 6 6 O 1.21299 * 110.24830 * 179.84400 * 5 4 2 7 7 C 1.33643 * 109.81269 * 0.42271 * 6 5 4 8 8 C 1.50695 * 126.55384 * 179.75625 * 7 6 5 9 9 H 1.09003 * 109.47349 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.47496 * 299.98077 * 8 7 6 11 11 N 1.46503 * 109.47237 * 59.97959 * 8 7 6 12 12 C 1.35308 * 125.87094 * 274.71718 * 11 8 7 13 13 C 1.35349 * 106.17727 * 179.90027 * 12 11 8 14 14 C 1.50698 * 126.74918 * 180.12073 * 13 12 11 15 15 C 1.50704 * 109.46873 * 125.29710 * 14 13 12 16 16 H 1.08005 * 119.99722 * 0.02562 * 15 14 13 17 17 C 1.37882 * 120.00301 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99818 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00244 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47174 * 59.99972 * 19 17 15 21 21 H 1.48498 * 109.47350 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47142 * 300.00281 * 19 17 15 23 23 N 1.33766 * 106.49560 * 0.35427 * 13 12 11 24 24 N 1.28628 * 108.88692 * 359.77173 * 23 13 12 25 25 N 1.31133 * 106.89627 * 359.74205 * 7 6 5 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.09003 * 109.46839 * 59.99667 * 10 8 7 34 34 H 1.09001 * 109.47323 * 180.02562 * 10 8 7 35 35 H 1.09002 * 109.47087 * 300.00026 * 10 8 7 36 36 H 1.08009 * 126.90768 * 0.02562 * 12 11 8 37 37 H 1.08994 * 109.47538 * 245.29331 * 14 13 12 38 38 H 1.08997 * 109.47531 * 5.30456 * 14 13 12 39 39 H 0.96991 * 119.99759 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 7 1.7902 -0.3780 -2.4631 6 8 2.3408 -1.1480 -3.2215 7 6 2.9990 -2.0784 -2.5235 8 6 3.8061 -3.2194 -3.0871 9 1 4.2231 -3.8080 -2.2699 10 6 2.9035 -4.1072 -3.9462 11 7 4.8947 -2.6877 -3.9108 12 6 4.8055 -2.3428 -5.2162 13 6 6.0339 -1.9019 -5.5745 14 6 6.4509 -1.3995 -6.9327 15 6 7.0530 -0.0247 -6.7966 16 1 7.1268 0.4387 -5.8238 17 6 7.5107 0.6413 -7.9139 18 7 7.4213 0.0768 -9.0984 19 14 8.2576 2.3450 -7.7451 20 1 9.4448 2.2791 -6.8554 21 1 8.6684 2.8403 -9.0835 22 1 7.2530 3.2705 -7.1623 23 7 6.8064 -2.0047 -4.4873 24 7 6.1018 -2.4733 -3.5186 25 7 2.8087 -1.8084 -1.2545 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 2.4865 -3.5186 -4.7634 34 1 3.4872 -4.9328 -4.3534 35 1 2.0935 -4.5029 -3.3333 36 1 3.9296 -2.4049 -5.8450 37 1 7.1884 -2.0783 -7.3606 38 1 5.5794 -1.3513 -7.5856 39 1 7.7429 0.5454 -9.8843 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600971902.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:50 Heat of formation + Delta-G solvation = 132.184459 kcal Electronic energy + Delta-G solvation = -22833.260267 eV Core-core repulsion = 19394.588662 eV Total energy + Delta-G solvation = -3438.671605 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -46.91314 -44.21716 -38.07159 -37.73596 -35.68553 -35.29384 -33.30508 -32.74452 -31.28260 -29.54493 -28.24010 -26.50171 -25.82360 -25.43660 -24.64380 -22.77004 -22.22734 -20.89358 -19.45258 -19.05686 -18.42670 -17.91395 -17.75499 -16.58434 -16.25611 -16.14198 -15.67499 -15.29462 -14.68032 -14.54045 -14.45318 -14.09371 -13.83605 -13.79784 -13.41767 -13.29256 -13.02832 -12.87516 -12.75213 -12.70845 -12.64763 -12.54237 -12.47453 -12.27897 -11.98759 -11.93681 -11.72960 -11.48601 -11.23799 -11.12497 -10.59626 -9.94773 -8.19892 -6.27985 -0.30548 0.49465 0.86100 1.37737 1.39159 1.41509 1.49346 1.50247 1.69425 2.29749 2.43066 2.78671 3.13132 3.27693 3.44920 3.64671 3.72367 3.88224 3.95173 4.08153 4.19887 4.36420 4.47311 4.53635 4.55205 4.60675 4.62119 4.70224 4.76239 4.80112 4.94640 5.07695 5.14619 5.21299 5.24875 5.39824 5.53508 5.61540 5.75776 6.20983 6.79500 6.85202 7.38316 7.58285 8.90786 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016384 B = 0.004020 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.605195 B = 6963.597091 C = 8041.329537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.007 4.007 3 C -0.145 4.145 4 C 0.173 3.827 5 N -0.391 5.391 6 O 0.080 5.920 7 C 0.162 3.838 8 C 0.247 3.753 9 H 0.173 0.827 10 C -0.162 4.162 11 N -0.296 5.296 12 C -0.036 4.036 13 C -0.002 4.002 14 C 0.102 3.898 15 C -0.527 4.527 16 H 0.041 0.959 17 C 0.013 3.987 18 N -0.923 5.923 19 Si 0.956 3.044 20 H -0.275 1.275 21 H -0.273 1.273 22 H -0.273 1.273 23 N -0.295 5.295 24 N -0.112 5.112 25 N -0.471 5.471 26 H 0.051 0.949 27 H 0.098 0.902 28 H 0.060 0.940 29 H 0.117 0.883 30 H 0.043 0.957 31 H 0.050 0.950 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.121 0.879 36 H 0.227 0.773 37 H 0.014 0.986 38 H 0.037 0.963 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.238 -6.953 16.821 25.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.027 4.027 3 C -0.203 4.203 4 C -0.100 4.100 5 N -0.098 5.098 6 O 0.022 5.978 7 C -0.061 4.061 8 C 0.144 3.856 9 H 0.190 0.810 10 C -0.220 4.220 11 N -0.093 5.093 12 C -0.185 4.185 13 C -0.139 4.139 14 C 0.064 3.936 15 C -0.566 4.566 16 H 0.059 0.941 17 C -0.186 4.186 18 N -0.563 5.563 19 Si 0.781 3.219 20 H -0.201 1.201 21 H -0.198 1.198 22 H -0.198 1.198 23 N -0.162 5.162 24 N -0.090 5.090 25 N -0.205 5.205 26 H 0.070 0.930 27 H 0.117 0.883 28 H 0.079 0.921 29 H 0.135 0.865 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.121 0.879 33 H 0.105 0.895 34 H 0.126 0.874 35 H 0.139 0.861 36 H 0.243 0.757 37 H 0.032 0.968 38 H 0.056 0.944 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.680 -6.373 18.049 26.057 hybrid contribution 0.164 0.967 -1.184 1.537 sum -17.516 -5.406 16.865 24.909 Atomic orbital electron populations 1.21829 0.91074 1.02896 1.03810 1.19873 0.97774 0.95329 0.89726 1.21868 1.00692 0.93849 1.03884 1.26602 0.95693 0.92322 0.95396 1.74614 1.17912 1.13765 1.03531 1.85318 1.47245 1.29745 1.35454 1.29043 0.96086 0.94465 0.86464 1.20379 0.82716 0.86338 0.96177 0.81002 1.22411 0.99741 0.99344 1.00469 1.47480 1.09164 1.43702 1.08938 1.23722 1.01931 1.06391 0.86447 1.22703 0.91602 1.01912 0.97683 1.17409 0.96432 0.94406 0.85378 1.21237 1.40350 1.01902 0.93071 0.94108 1.25716 0.96189 1.01849 0.94864 1.70010 1.47884 1.39612 0.98814 0.85639 0.78890 0.79798 0.77539 1.20091 1.19802 1.19785 1.75014 1.27318 1.15390 0.98514 1.78185 0.89944 1.18425 1.22403 1.71899 1.16494 1.14461 1.17668 0.92979 0.88332 0.92085 0.86495 0.93760 0.93120 0.87940 0.89501 0.87360 0.86088 0.75685 0.96797 0.94447 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.18 71.98 0.66 -1.13 16 2 C -0.01 -0.12 3.39 -11.54 -0.04 -0.16 16 3 C -0.14 -2.47 9.17 71.98 0.66 -1.81 16 4 C 0.17 4.30 6.72 138.47 0.93 5.23 16 5 N -0.39 -11.10 12.16 -60.35 -0.73 -11.83 16 6 O 0.08 2.22 11.31 74.83 0.85 3.07 16 7 C 0.16 3.94 7.35 88.38 0.65 4.59 16 8 C 0.25 4.82 3.79 44.24 0.17 4.99 16 9 H 0.17 2.70 8.14 -2.39 -0.02 2.68 16 10 C -0.16 -1.69 8.81 71.98 0.63 -1.05 16 11 N -0.30 -9.04 3.24 -330.74 -1.07 -10.11 16 12 C -0.04 -1.21 10.60 83.49 0.89 -0.32 16 13 C 0.00 -0.10 6.44 41.60 0.27 0.16 16 14 C 0.10 5.45 5.55 29.10 0.16 5.61 16 15 C -0.53 -31.26 9.09 25.60 0.23 -31.03 16 16 H 0.04 2.50 7.74 -2.91 -0.02 2.48 16 17 C 0.01 0.73 5.46 84.66 0.46 1.19 16 18 N -0.92 -55.13 13.29 21.45 0.28 -54.84 16 19 Si 0.96 45.99 29.54 68.60 2.03 48.02 16 20 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 21 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 23 N -0.29 -14.13 12.40 -48.60 -0.60 -14.73 16 24 N -0.11 -4.45 13.16 37.02 0.49 -3.96 16 25 N -0.47 -12.00 11.55 -303.23 -3.50 -15.50 16 26 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.09 0.91 7.17 -2.39 -0.02 0.89 16 34 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.23 5.48 7.30 -2.91 -0.02 5.46 16 37 H 0.01 0.79 8.14 -2.39 -0.02 0.78 16 38 H 0.04 1.94 8.12 -2.39 -0.02 1.92 16 39 H 0.27 14.96 8.31 -92.72 -0.77 14.19 16 Total: -1.00 -77.55 341.71 4.46 -73.09 By element: Atomic # 1 Polarization: -0.51 SS G_CDS: 1.06 Total: 0.55 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: 5.67 Total: -13.74 kcal Atomic # 7 Polarization: -105.85 SS G_CDS: -5.14 Total: -110.98 kcal Atomic # 8 Polarization: 2.22 SS G_CDS: 0.85 Total: 3.07 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -77.55 4.46 -73.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600971902.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.275 kcal (2) G-P(sol) polarization free energy of solvation -77.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds