Wall clock time and date at job start Tue Mar 31 2020 06:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 N 1.29948 * 126.28505 * 59.69164 * 4 2 1 6 6 O 1.21306 * 110.25080 * 179.84573 * 5 4 2 7 7 C 1.33647 * 109.80804 * 0.42128 * 6 5 4 8 8 C 1.50694 * 126.54805 * 179.75926 * 7 6 5 9 9 H 1.08995 * 109.47320 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.47213 * 59.97634 * 8 7 6 11 11 N 1.46497 * 109.47473 * 299.97907 * 8 7 6 12 12 C 1.35309 * 125.87333 * 84.99529 * 11 8 7 13 13 C 1.35351 * 106.17722 * 180.02562 * 12 11 8 14 14 C 1.50698 * 126.75139 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47320 * 125.00167 * 14 13 12 16 16 H 1.08004 * 119.99863 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00355 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00008 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00046 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47125 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47027 * 119.99654 * 19 17 15 22 22 H 1.48499 * 109.47131 * 239.99743 * 19 17 15 23 23 N 1.33770 * 106.49704 * 0.02562 * 13 12 11 24 24 N 1.28632 * 108.88450 * 359.73507 * 23 13 12 25 25 N 1.31129 * 106.89837 * 359.73688 * 7 6 5 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 32 32 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 33 33 H 1.09008 * 109.46783 * 300.00189 * 10 8 7 34 34 H 1.09003 * 109.46961 * 59.99659 * 10 8 7 35 35 H 1.08998 * 109.47293 * 180.02562 * 10 8 7 36 36 H 1.07999 * 126.91233 * 359.97438 * 12 11 8 37 37 H 1.09003 * 109.47587 * 244.99962 * 14 13 12 38 38 H 1.09002 * 109.47279 * 5.00163 * 14 13 12 39 39 H 0.97001 * 119.99962 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.7904 -0.3780 -2.4631 6 8 2.3410 -1.1482 -3.2215 7 6 2.9992 -2.0785 -2.5233 8 6 3.8063 -3.2195 -3.0868 9 1 4.2232 -3.8080 -2.2696 10 6 4.9432 -2.6641 -3.9471 11 7 2.9421 -4.0696 -3.9094 12 6 2.6412 -3.8686 -5.2132 13 6 1.8196 -4.8828 -5.5714 14 6 1.2049 -5.1088 -6.9286 15 6 1.5534 -6.4924 -7.4137 16 1 2.1597 -7.1429 -6.8007 17 6 1.0990 -6.9276 -8.6406 18 7 0.3611 -6.1355 -9.3873 19 14 1.5316 -8.6423 -9.2422 20 1 2.3667 -9.3283 -8.2237 21 1 0.2849 -9.4180 -9.4648 22 1 2.2875 -8.5438 -10.5166 23 7 1.6596 -5.6443 -4.4833 24 7 2.3417 -5.1385 -3.5171 25 7 2.8088 -1.8084 -1.2543 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 4.5262 -2.0756 -4.7643 34 1 5.5862 -2.0316 -3.3350 35 1 5.5267 -3.4895 -4.3550 36 1 2.9865 -3.0608 -5.8414 37 1 0.1216 -5.0108 -6.8578 38 1 1.5915 -4.3697 -7.6302 39 1 0.0412 -6.4418 -10.2503 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600971910.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:57 Heat of formation + Delta-G solvation = 156.667683 kcal Electronic energy + Delta-G solvation = -22690.245054 eV Core-core repulsion = 19252.635121 eV Total energy + Delta-G solvation = -3437.609932 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.92060 -42.71631 -37.22476 -36.64952 -34.59987 -33.45997 -31.88214 -31.23027 -30.20365 -27.67858 -27.62900 -25.54514 -24.90424 -23.60805 -23.38904 -21.65678 -20.63857 -19.83255 -18.42180 -17.97896 -16.83893 -16.69258 -16.11049 -15.44645 -14.94607 -14.65500 -14.51426 -14.21652 -13.85716 -13.54281 -13.01197 -12.94889 -12.66874 -12.64764 -12.26669 -12.12262 -12.03072 -11.96866 -11.73940 -11.59320 -11.52561 -11.22343 -11.08402 -10.75790 -10.71154 -10.34800 -10.12728 -9.78113 -9.64099 -9.35869 -8.47902 -8.21545 -6.00535 -4.01400 0.70254 1.77961 1.90099 2.49932 2.52786 3.20392 3.34614 3.35825 3.42912 3.50122 3.65758 4.12683 4.29085 4.50178 4.53369 4.58426 4.60531 4.84375 4.96156 5.13785 5.18920 5.19686 5.28959 5.35078 5.36559 5.38322 5.52355 5.58311 5.61533 5.72008 5.76801 5.85997 5.96908 6.13807 6.93769 7.03133 7.49759 7.58428 7.82821 7.97251 8.33979 9.02035 9.15128 9.61715 11.10591 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.030402 B = 0.003171 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.770211 B = 8828.358366 C = 9111.728028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.004 4.004 3 C -0.145 4.145 4 C 0.174 3.826 5 N -0.370 5.370 6 O 0.094 5.906 7 C 0.164 3.836 8 C 0.253 3.747 9 H 0.152 0.848 10 C -0.166 4.166 11 N -0.314 5.314 12 C -0.073 4.073 13 C 0.040 3.960 14 C 0.091 3.909 15 C -0.504 4.504 16 H 0.060 0.940 17 C 0.057 3.943 18 N -0.897 5.897 19 Si 0.896 3.104 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.285 1.285 23 N -0.249 5.249 24 N -0.100 5.100 25 N -0.460 5.460 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.186 0.814 37 H 0.040 0.960 38 H 0.039 0.961 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.221 15.659 16.723 24.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.024 4.024 3 C -0.203 4.203 4 C -0.099 4.099 5 N -0.075 5.075 6 O 0.033 5.967 7 C -0.059 4.059 8 C 0.147 3.853 9 H 0.170 0.830 10 C -0.225 4.225 11 N -0.111 5.111 12 C -0.220 4.220 13 C -0.096 4.096 14 C 0.052 3.948 15 C -0.542 4.542 16 H 0.078 0.922 17 C -0.144 4.144 18 N -0.537 5.537 19 Si 0.724 3.276 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.211 1.211 23 N -0.117 5.117 24 N -0.078 5.078 25 N -0.194 5.194 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.121 0.879 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.203 0.797 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.407 15.355 17.959 24.762 hybrid contribution 0.495 -0.243 -1.324 1.434 sum 7.902 15.112 16.635 23.823 Atomic orbital electron populations 1.21871 0.92645 1.02904 1.03119 1.19598 0.96626 0.95384 0.90756 1.21856 1.01421 0.93874 1.03136 1.25906 0.96488 0.92729 0.94750 1.74613 1.16236 1.13758 1.02862 1.85348 1.46823 1.29381 1.35100 1.28714 0.96237 0.94518 0.86417 1.19665 0.86186 0.84081 0.95337 0.83007 1.22289 0.96133 1.03558 1.00491 1.47137 1.35347 1.19500 1.09087 1.23377 1.07054 1.05702 0.85830 1.23083 0.97618 0.90756 0.98102 1.17775 0.96006 0.98230 0.82784 1.21067 1.32288 0.98660 1.02227 0.92158 1.24973 0.95130 0.97609 0.96693 1.69955 1.35722 1.36142 1.11872 0.86457 0.78235 0.84402 0.78494 1.19672 1.20952 1.21086 1.75106 1.15609 1.23182 0.97796 1.78320 1.08873 0.97445 1.23179 1.71882 1.16590 1.13484 1.17414 0.92096 0.91737 0.90859 0.87869 0.92252 0.91771 0.90906 0.89838 0.89027 0.88644 0.79700 0.94179 0.94310 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.18 37.16 0.34 -0.89 16 2 C 0.00 -0.03 3.39 -91.77 -0.31 -0.34 16 3 C -0.14 -1.02 9.18 37.16 0.34 -0.68 16 4 C 0.17 2.15 6.72 -156.37 -1.05 1.10 16 5 N -0.37 -5.08 12.16 30.90 0.38 -4.70 16 6 O 0.09 1.28 11.31 18.09 0.20 1.49 16 7 C 0.16 2.06 7.35 -13.06 -0.10 1.96 16 8 C 0.25 2.79 3.79 -69.08 -0.26 2.53 16 9 H 0.15 1.43 8.14 -51.93 -0.42 1.01 16 10 C -0.17 -1.23 8.81 37.16 0.33 -0.90 16 11 N -0.31 -5.03 3.24 -55.89 -0.18 -5.21 16 12 C -0.07 -1.26 10.61 -17.05 -0.18 -1.44 16 13 C 0.04 0.90 6.44 -82.78 -0.53 0.37 16 14 C 0.09 2.33 5.55 -29.03 -0.16 2.17 16 15 C -0.50 -14.30 9.09 -34.44 -0.31 -14.61 16 16 H 0.06 1.75 7.74 -52.48 -0.41 1.34 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -26.39 13.29 55.43 0.74 -25.66 16 19 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 N -0.25 -5.83 12.40 33.29 0.41 -5.41 16 24 N -0.10 -2.01 13.16 60.35 0.79 -1.21 16 25 N -0.46 -5.99 11.55 -9.86 -0.11 -6.10 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.61 7.17 -51.92 -0.37 0.24 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.19 2.53 7.30 -52.49 -0.38 2.14 16 37 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.04 0.98 8.12 -51.93 -0.42 0.56 16 39 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 341.73 15.07 5.15 5.15 Total: -1.00 -34.17 341.73 -5.01 -39.17 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: -5.37 Total: -5.15 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -2.00 Total: -9.22 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: 2.02 Total: -48.29 kcal Atomic # 8 Polarization: 1.28 SS G_CDS: 0.20 Total: 1.49 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.17 -5.01 -39.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600971910.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.841 kcal (2) G-P(sol) polarization free energy of solvation -34.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds