Wall clock time and date at job start Tue Mar 31 2020 06:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 N 1.29948 * 126.28505 * 59.69164 * 4 2 1 6 6 O 1.21306 * 110.25080 * 179.84573 * 5 4 2 7 7 C 1.33647 * 109.80804 * 0.42128 * 6 5 4 8 8 C 1.50694 * 126.54805 * 179.75926 * 7 6 5 9 9 H 1.08995 * 109.47320 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.47213 * 59.97634 * 8 7 6 11 11 N 1.46497 * 109.47473 * 299.97907 * 8 7 6 12 12 C 1.35309 * 125.87333 * 84.99529 * 11 8 7 13 13 C 1.35351 * 106.17722 * 180.02562 * 12 11 8 14 14 C 1.50698 * 126.75139 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47320 * 125.00167 * 14 13 12 16 16 H 1.08004 * 119.99863 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00355 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00008 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00046 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47125 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47027 * 119.99654 * 19 17 15 22 22 H 1.48499 * 109.47131 * 239.99743 * 19 17 15 23 23 N 1.33770 * 106.49704 * 0.02562 * 13 12 11 24 24 N 1.28632 * 108.88450 * 359.73507 * 23 13 12 25 25 N 1.31129 * 106.89837 * 359.73688 * 7 6 5 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 32 32 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 33 33 H 1.09008 * 109.46783 * 300.00189 * 10 8 7 34 34 H 1.09003 * 109.46961 * 59.99659 * 10 8 7 35 35 H 1.08998 * 109.47293 * 180.02562 * 10 8 7 36 36 H 1.07999 * 126.91233 * 359.97438 * 12 11 8 37 37 H 1.09003 * 109.47587 * 244.99962 * 14 13 12 38 38 H 1.09002 * 109.47279 * 5.00163 * 14 13 12 39 39 H 0.97001 * 119.99962 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.7904 -0.3780 -2.4631 6 8 2.3410 -1.1482 -3.2215 7 6 2.9992 -2.0785 -2.5233 8 6 3.8063 -3.2195 -3.0868 9 1 4.2232 -3.8080 -2.2696 10 6 4.9432 -2.6641 -3.9471 11 7 2.9421 -4.0696 -3.9094 12 6 2.6412 -3.8686 -5.2132 13 6 1.8196 -4.8828 -5.5714 14 6 1.2049 -5.1088 -6.9286 15 6 1.5534 -6.4924 -7.4137 16 1 2.1597 -7.1429 -6.8007 17 6 1.0990 -6.9276 -8.6406 18 7 0.3611 -6.1355 -9.3873 19 14 1.5316 -8.6423 -9.2422 20 1 2.3667 -9.3283 -8.2237 21 1 0.2849 -9.4180 -9.4648 22 1 2.2875 -8.5438 -10.5166 23 7 1.6596 -5.6443 -4.4833 24 7 2.3417 -5.1385 -3.5171 25 7 2.8088 -1.8084 -1.2543 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 4.5262 -2.0756 -4.7643 34 1 5.5862 -2.0316 -3.3350 35 1 5.5267 -3.4895 -4.3550 36 1 2.9865 -3.0608 -5.8414 37 1 0.1216 -5.0108 -6.8578 38 1 1.5915 -4.3697 -7.6302 39 1 0.0412 -6.4418 -10.2503 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600971910.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:55 Heat of formation + Delta-G solvation = 132.395629 kcal Electronic energy + Delta-G solvation = -22691.297569 eV Core-core repulsion = 19252.635121 eV Total energy + Delta-G solvation = -3438.662448 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -46.90854 -44.21962 -38.06678 -37.73906 -35.67808 -35.28574 -33.29975 -32.73965 -31.28507 -29.53975 -28.22944 -26.50801 -25.81724 -25.42559 -24.64303 -22.76882 -22.23024 -20.88973 -19.45166 -19.02325 -18.47144 -17.94753 -17.68488 -16.54140 -16.25710 -16.12203 -15.70757 -15.28317 -14.68308 -14.53163 -14.35464 -14.26979 -13.83644 -13.69961 -13.42478 -13.28252 -12.99716 -12.87137 -12.74405 -12.72255 -12.61600 -12.55710 -12.45469 -12.27138 -11.98130 -11.94316 -11.71212 -11.42705 -11.24705 -11.12197 -10.57959 -9.95066 -8.17634 -6.26169 -0.30731 0.49307 0.85871 1.37953 1.41768 1.43313 1.48986 1.56081 1.69434 2.30229 2.45808 2.78564 3.15567 3.27083 3.45096 3.64255 3.72164 3.89057 3.96130 4.08576 4.19602 4.36023 4.47563 4.53829 4.54643 4.60415 4.63269 4.69566 4.77297 4.80858 4.95714 5.07161 5.15733 5.22066 5.24916 5.40247 5.52209 5.61098 5.78125 6.22041 6.82539 6.85239 7.40668 7.57912 8.93601 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.030402 B = 0.003171 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.770211 B = 8828.358366 C = 9111.728028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.007 4.007 3 C -0.138 4.138 4 C 0.173 3.827 5 N -0.390 5.390 6 O 0.081 5.919 7 C 0.164 3.836 8 C 0.247 3.753 9 H 0.171 0.829 10 C -0.162 4.162 11 N -0.296 5.296 12 C -0.036 4.036 13 C -0.002 4.002 14 C 0.101 3.899 15 C -0.521 4.521 16 H 0.047 0.953 17 C 0.008 3.992 18 N -0.927 5.927 19 Si 0.962 3.038 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.271 1.271 23 N -0.295 5.295 24 N -0.111 5.111 25 N -0.471 5.471 26 H 0.044 0.956 27 H 0.051 0.949 28 H 0.101 0.899 29 H 0.116 0.884 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.104 0.896 36 H 0.227 0.773 37 H 0.006 0.994 38 H 0.038 0.962 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.081 16.661 17.749 26.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 C -0.196 4.196 4 C -0.100 4.100 5 N -0.097 5.097 6 O 0.023 5.977 7 C -0.059 4.059 8 C 0.144 3.856 9 H 0.189 0.811 10 C -0.221 4.221 11 N -0.093 5.093 12 C -0.185 4.185 13 C -0.139 4.139 14 C 0.062 3.938 15 C -0.559 4.559 16 H 0.066 0.934 17 C -0.190 4.190 18 N -0.568 5.568 19 Si 0.787 3.213 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.196 1.196 23 N -0.162 5.162 24 N -0.089 5.089 25 N -0.205 5.205 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.120 0.880 29 H 0.134 0.866 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.116 0.884 33 H 0.106 0.894 34 H 0.140 0.860 35 H 0.122 0.878 36 H 0.243 0.757 37 H 0.025 0.975 38 H 0.056 0.944 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.289 16.360 19.008 26.743 hybrid contribution -0.053 -0.442 -1.524 1.587 sum 9.236 15.918 17.484 25.385 Atomic orbital electron populations 1.21866 0.92363 1.02092 1.03911 1.19870 0.96809 0.96337 0.89710 1.21831 1.01424 0.92564 1.03828 1.26596 0.95589 0.92372 0.95416 1.74613 1.17110 1.14465 1.03484 1.85319 1.47210 1.29731 1.35422 1.28950 0.95924 0.94544 0.86440 1.20333 0.85811 0.83326 0.96133 0.81136 1.22413 0.94906 1.04237 1.00498 1.47471 1.34150 1.18583 1.09065 1.23715 1.04034 1.04359 0.86370 1.22693 1.00665 0.93414 0.97114 1.17425 0.94219 0.97141 0.84997 1.21298 1.32332 0.99859 1.02458 0.93423 1.25790 0.94908 1.01527 0.96790 1.70050 1.36448 1.37958 1.12324 0.85442 0.78102 0.79537 0.78218 1.19646 1.20507 1.19617 1.75016 1.17496 1.25034 0.98679 1.78188 1.09345 0.98918 1.22476 1.71907 1.17074 1.13904 1.17655 0.93669 0.92988 0.88025 0.86608 0.92178 0.92893 0.88375 0.89396 0.86012 0.87757 0.75697 0.97543 0.94405 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.18 71.98 0.66 -1.57 16 2 C -0.01 -0.12 3.39 -11.54 -0.04 -0.16 16 3 C -0.14 -1.67 9.18 71.98 0.66 -1.00 16 4 C 0.17 4.08 6.72 138.46 0.93 5.01 16 5 N -0.39 -10.38 12.16 -60.29 -0.73 -11.12 16 6 O 0.08 2.11 11.31 74.79 0.85 2.96 16 7 C 0.16 3.83 7.35 88.38 0.65 4.48 16 8 C 0.25 4.84 3.79 44.25 0.17 5.01 16 9 H 0.17 2.75 8.14 -2.39 -0.02 2.73 16 10 C -0.16 -1.81 8.81 71.98 0.63 -1.17 16 11 N -0.30 -9.05 3.24 -330.75 -1.07 -10.12 16 12 C -0.04 -1.21 10.61 83.49 0.89 -0.32 16 13 C 0.00 -0.10 6.44 41.60 0.27 0.17 16 14 C 0.10 5.38 5.55 29.10 0.16 5.54 16 15 C -0.52 -30.34 9.09 25.60 0.23 -30.10 16 16 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 17 C 0.01 0.46 5.46 84.65 0.46 0.92 16 18 N -0.93 -55.33 13.29 21.45 0.28 -55.05 16 19 Si 0.96 45.18 29.54 68.60 2.03 47.20 16 20 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 N -0.29 -14.13 12.40 -48.60 -0.60 -14.73 16 24 N -0.11 -4.44 13.16 37.02 0.49 -3.95 16 25 N -0.47 -11.55 11.55 -303.17 -3.50 -15.05 16 26 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 32 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.09 0.95 7.17 -2.38 -0.02 0.94 16 34 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.23 5.50 7.30 -2.91 -0.02 5.48 16 37 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.04 1.97 8.12 -2.39 -0.02 1.95 16 39 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -76.58 341.73 4.47 -72.12 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: 1.06 Total: 0.94 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: 5.67 Total: -13.20 kcal Atomic # 7 Polarization: -104.88 SS G_CDS: -5.14 Total: -110.02 kcal Atomic # 8 Polarization: 2.11 SS G_CDS: 0.85 Total: 2.96 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -76.58 4.47 -72.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600971910.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.511 kcal (2) G-P(sol) polarization free energy of solvation -76.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds