Wall clock time and date at job start Tue Mar 31 2020 07:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99455 * 2 1 4 4 H 1.48501 * 109.46891 * 239.99543 * 3 2 1 5 5 H 1.48496 * 109.47132 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46996 * 120.00028 * 3 2 1 7 7 C 1.37877 * 120.00499 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47141 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.46751 * 55.00458 * 10 9 7 12 12 N 1.46499 * 109.47481 * 295.00678 * 10 9 7 13 13 C 1.34777 * 120.00199 * 154.99940 * 12 10 9 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 10 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 10 16 16 C 1.52996 * 109.47159 * 179.72352 * 15 13 12 17 17 C 1.52994 * 109.47118 * 179.97438 * 16 15 13 18 18 C 1.53003 * 109.46834 * 179.97438 * 17 16 15 19 19 O 1.42907 * 109.47091 * 180.02562 * 18 17 16 20 20 C 1.50700 * 109.47071 * 175.00009 * 10 9 7 21 21 C 1.38235 * 119.99909 * 79.73572 * 20 10 9 22 22 C 1.38235 * 120.00203 * 179.78500 * 21 20 10 23 23 C 1.38243 * 119.99736 * 0.43880 * 22 21 20 24 24 C 1.38244 * 119.99802 * 359.81374 * 23 22 21 25 25 C 1.38234 * 120.00041 * 359.97438 * 24 23 22 26 26 H 0.96993 * 120.00753 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46966 * 59.99935 * 9 7 2 28 28 H 1.08995 * 109.47763 * 300.00102 * 9 7 2 29 29 H 0.97000 * 119.99484 * 334.99037 * 12 10 9 30 30 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 31 31 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 32 32 H 1.09004 * 109.47066 * 299.99797 * 16 15 13 33 33 H 1.09000 * 109.47234 * 59.99288 * 16 15 13 34 34 H 1.08998 * 109.46965 * 299.99512 * 17 16 15 35 35 H 1.09003 * 109.47184 * 60.00331 * 17 16 15 36 36 H 1.08990 * 109.47421 * 299.99996 * 18 17 16 37 37 H 1.09002 * 109.47073 * 60.00711 * 18 17 16 38 38 H 0.96694 * 114.00367 * 180.02562 * 19 18 17 39 39 H 1.08003 * 119.99755 * 359.97438 * 21 20 10 40 40 H 1.07999 * 120.00430 * 180.26737 * 22 21 20 41 41 H 1.07994 * 120.00105 * 179.82908 * 23 22 21 42 42 H 1.07997 * 119.99648 * 180.02562 * 24 23 22 43 43 H 1.07994 * 119.99956 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 1 2.9295 -3.5551 0.8424 12 7 3.0066 -3.6538 -1.2512 13 6 4.2313 -4.2144 -1.2988 14 8 4.7035 -4.7252 -0.3053 15 6 5.0169 -4.2004 -2.5849 16 6 6.3650 -4.8901 -2.3665 17 6 7.1622 -4.8765 -3.6723 18 6 8.5106 -5.5657 -3.4537 19 8 9.2555 -5.5525 -4.6732 20 6 1.4961 -4.9636 0.1244 21 6 0.8899 -5.5204 -0.9862 22 6 0.2062 -6.7166 -0.8736 23 6 0.1212 -7.3514 0.3515 24 6 0.7230 -6.7919 1.4632 25 6 1.4104 -5.5979 1.3496 26 1 -0.4851 0.8399 -0.0004 27 1 0.6249 -2.5570 -0.8897 28 1 0.6242 -2.5568 0.8902 29 1 2.6291 -3.2450 -2.0457 30 1 4.4588 -4.7298 -3.3572 31 1 5.1825 -3.1697 -2.8982 32 1 6.9231 -4.3608 -1.5942 33 1 6.1993 -5.9209 -2.0531 34 1 6.6040 -5.4062 -4.4443 35 1 7.3280 -3.8459 -3.9861 36 1 9.0686 -5.0358 -2.6819 37 1 8.3452 -6.5964 -3.1398 38 1 10.1233 -5.9741 -4.6086 39 1 0.9529 -5.0224 -1.9425 40 1 -0.2637 -7.1539 -1.7421 41 1 -0.4152 -8.2845 0.4401 42 1 0.6569 -7.2880 2.4202 43 1 1.8809 -5.1610 2.2180 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601357405.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:30 Heat of formation + Delta-G solvation = -92.690124 kcal Electronic energy + Delta-G solvation = -22764.317923 eV Core-core repulsion = 19387.142617 eV Total energy + Delta-G solvation = -3377.175306 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.65817 -38.48454 -37.33059 -35.31627 -34.28313 -32.73653 -31.24969 -30.47147 -29.40721 -28.60847 -25.15018 -23.83547 -22.29479 -21.95146 -21.31074 -20.10390 -19.62993 -17.48808 -16.98345 -16.36105 -16.16257 -16.14162 -15.47438 -15.01431 -14.65463 -14.53634 -14.37033 -13.84292 -13.48916 -13.20112 -13.00949 -12.70871 -12.51471 -12.12735 -12.07858 -11.79863 -11.72232 -11.47518 -11.13995 -11.04676 -10.91123 -10.73411 -10.72483 -10.63044 -10.45268 -10.16639 -9.78210 -9.38555 -9.25714 -8.54603 -8.46330 -8.39385 -8.17806 -6.09866 -4.13593 1.78242 1.80338 3.16214 3.27847 3.33168 3.35852 3.68083 4.09020 4.26803 4.39084 4.81231 4.86349 5.08899 5.22018 5.25532 5.26770 5.27394 5.30666 5.32913 5.38561 5.54260 5.69498 5.71533 5.78526 5.85485 5.91054 5.94380 6.18498 6.20048 6.31895 6.36303 6.44547 6.58782 6.84740 6.85408 6.94220 7.11963 7.38229 7.40692 7.48689 7.62568 7.86638 8.16083 8.25608 8.80629 8.92130 9.51488 11.00649 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.008697 B = 0.004997 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3218.667946 B = 5602.039244 C = 8305.215318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.024 3.976 10 C 0.183 3.817 11 H 0.086 0.914 12 N -0.702 5.702 13 C 0.509 3.491 14 O -0.553 6.553 15 C -0.140 4.140 16 C -0.099 4.099 17 C -0.121 4.121 18 C 0.074 3.926 19 O -0.578 6.578 20 C -0.070 4.070 21 C -0.108 4.108 22 C -0.125 4.125 23 C -0.136 4.136 24 C -0.123 4.123 25 C -0.109 4.109 26 H 0.262 0.738 27 H 0.024 0.976 28 H 0.033 0.967 29 H 0.401 0.599 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.378 0.622 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.369 -12.622 -5.797 16.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.079 3.921 11 H 0.104 0.896 12 N -0.350 5.350 13 C 0.295 3.705 14 O -0.432 6.432 15 C -0.181 4.181 16 C -0.138 4.138 17 C -0.158 4.158 18 C -0.003 4.003 19 O -0.383 6.383 20 C -0.071 4.071 21 C -0.127 4.127 22 C -0.143 4.143 23 C -0.154 4.154 24 C -0.141 4.141 25 C -0.127 4.127 26 H 0.072 0.928 27 H 0.042 0.958 28 H 0.052 0.948 29 H 0.235 0.765 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.224 0.776 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.994 -12.530 -5.287 15.775 hybrid contribution 0.592 0.905 -0.122 1.088 sum 8.586 -11.625 -5.410 15.431 Atomic orbital electron populations 1.69944 1.06028 1.26946 1.50182 1.24987 0.94794 0.99218 0.95103 0.86652 0.79565 0.83060 0.78706 1.20244 1.21291 1.20211 1.21098 0.93042 0.90413 1.51398 0.92450 1.19379 0.93222 0.90156 0.98536 1.20231 0.93403 0.91850 0.86636 0.89622 1.46006 1.17051 1.57787 1.14205 1.20564 0.81791 0.77945 0.90199 1.90649 1.69628 1.45991 1.36939 1.21638 0.96611 1.03301 0.96508 1.21201 0.94282 1.01794 0.96474 1.21550 0.94305 1.01569 0.98413 1.22221 0.92806 0.99380 0.85915 1.86472 1.33660 1.83012 1.35171 1.20561 0.96701 0.96537 0.93315 1.20910 0.97639 0.95578 0.98530 1.21045 0.99948 0.95986 0.97355 1.20996 1.01091 1.00056 0.93231 1.21043 0.98570 0.96197 0.98285 1.21023 0.99153 0.95110 0.97450 0.92789 0.95770 0.94842 0.76471 0.89245 0.88847 0.91020 0.91178 0.91257 0.91141 0.93532 0.93599 0.77588 0.86562 0.86744 0.86854 0.86625 0.86218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.56 13.29 55.43 0.74 -24.83 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.52 -13.76 8.84 -34.44 -0.30 -14.06 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.58 4.49 -27.88 -0.13 0.46 16 10 C 0.18 3.73 2.11 -69.08 -0.15 3.58 16 11 H 0.09 1.92 7.44 -51.93 -0.39 1.53 16 12 N -0.70 -12.45 4.04 -54.93 -0.22 -12.67 16 13 C 0.51 8.73 7.79 -10.98 -0.09 8.65 16 14 O -0.55 -11.39 15.64 5.55 0.09 -11.30 16 15 C -0.14 -1.76 5.70 -27.88 -0.16 -1.92 16 16 C -0.10 -1.18 4.50 -26.74 -0.12 -1.30 16 17 C -0.12 -1.24 5.58 -26.73 -0.15 -1.39 16 18 C 0.07 0.70 7.05 37.16 0.26 0.96 16 19 O -0.58 -5.63 13.66 -35.23 -0.48 -6.11 16 20 C -0.07 -1.30 4.91 -104.62 -0.51 -1.82 16 21 C -0.11 -1.82 9.32 -39.58 -0.37 -2.19 16 22 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 23 C -0.14 -1.94 10.05 -39.58 -0.40 -2.33 16 24 C -0.12 -1.86 10.05 -39.58 -0.40 -2.26 16 25 C -0.11 -1.91 9.67 -39.58 -0.38 -2.29 16 26 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.40 6.48 8.60 -40.82 -0.35 6.13 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.93 8.10 -51.93 -0.42 0.50 16 33 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.38 1.88 9.12 45.56 0.42 2.30 16 39 H 0.12 1.82 7.73 -52.48 -0.41 1.41 16 40 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 42 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 43 H 0.12 2.02 8.04 -52.49 -0.42 1.60 16 LS Contribution 365.54 15.07 5.51 5.51 Total: -1.00 -32.41 365.54 -8.96 -41.37 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -6.18 Total: 8.70 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -3.38 Total: -16.62 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.51 Total: -37.50 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.39 Total: -17.42 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.41 -8.96 -41.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601357405.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.319 kcal (2) G-P(sol) polarization free energy of solvation -32.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds