Wall clock time and date at job start Tue Mar 31 2020 07:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99455 * 2 1 4 4 H 1.48501 * 109.46891 * 239.99543 * 3 2 1 5 5 H 1.48496 * 109.47132 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46996 * 120.00028 * 3 2 1 7 7 C 1.37877 * 120.00499 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47141 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.46751 * 55.00458 * 10 9 7 12 12 N 1.46499 * 109.47481 * 295.00678 * 10 9 7 13 13 C 1.34777 * 120.00199 * 154.99940 * 12 10 9 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 10 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 10 16 16 C 1.52996 * 109.47159 * 179.72352 * 15 13 12 17 17 C 1.52994 * 109.47118 * 179.97438 * 16 15 13 18 18 C 1.53003 * 109.46834 * 179.97438 * 17 16 15 19 19 O 1.42907 * 109.47091 * 180.02562 * 18 17 16 20 20 C 1.50700 * 109.47071 * 175.00009 * 10 9 7 21 21 C 1.38235 * 119.99909 * 79.73572 * 20 10 9 22 22 C 1.38235 * 120.00203 * 179.78500 * 21 20 10 23 23 C 1.38243 * 119.99736 * 0.43880 * 22 21 20 24 24 C 1.38244 * 119.99802 * 359.81374 * 23 22 21 25 25 C 1.38234 * 120.00041 * 359.97438 * 24 23 22 26 26 H 0.96993 * 120.00753 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46966 * 59.99935 * 9 7 2 28 28 H 1.08995 * 109.47763 * 300.00102 * 9 7 2 29 29 H 0.97000 * 119.99484 * 334.99037 * 12 10 9 30 30 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 31 31 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 32 32 H 1.09004 * 109.47066 * 299.99797 * 16 15 13 33 33 H 1.09000 * 109.47234 * 59.99288 * 16 15 13 34 34 H 1.08998 * 109.46965 * 299.99512 * 17 16 15 35 35 H 1.09003 * 109.47184 * 60.00331 * 17 16 15 36 36 H 1.08990 * 109.47421 * 299.99996 * 18 17 16 37 37 H 1.09002 * 109.47073 * 60.00711 * 18 17 16 38 38 H 0.96694 * 114.00367 * 180.02562 * 19 18 17 39 39 H 1.08003 * 119.99755 * 359.97438 * 21 20 10 40 40 H 1.07999 * 120.00430 * 180.26737 * 22 21 20 41 41 H 1.07994 * 120.00105 * 179.82908 * 23 22 21 42 42 H 1.07997 * 119.99648 * 180.02562 * 24 23 22 43 43 H 1.07994 * 119.99956 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 1 2.9295 -3.5551 0.8424 12 7 3.0066 -3.6538 -1.2512 13 6 4.2313 -4.2144 -1.2988 14 8 4.7035 -4.7252 -0.3053 15 6 5.0169 -4.2004 -2.5849 16 6 6.3650 -4.8901 -2.3665 17 6 7.1622 -4.8765 -3.6723 18 6 8.5106 -5.5657 -3.4537 19 8 9.2555 -5.5525 -4.6732 20 6 1.4961 -4.9636 0.1244 21 6 0.8899 -5.5204 -0.9862 22 6 0.2062 -6.7166 -0.8736 23 6 0.1212 -7.3514 0.3515 24 6 0.7230 -6.7919 1.4632 25 6 1.4104 -5.5979 1.3496 26 1 -0.4851 0.8399 -0.0004 27 1 0.6249 -2.5570 -0.8897 28 1 0.6242 -2.5568 0.8902 29 1 2.6291 -3.2450 -2.0457 30 1 4.4588 -4.7298 -3.3572 31 1 5.1825 -3.1697 -2.8982 32 1 6.9231 -4.3608 -1.5942 33 1 6.1993 -5.9209 -2.0531 34 1 6.6040 -5.4062 -4.4443 35 1 7.3280 -3.8459 -3.9861 36 1 9.0686 -5.0358 -2.6819 37 1 8.3452 -6.5964 -3.1398 38 1 10.1233 -5.9741 -4.6086 39 1 0.9529 -5.0224 -1.9425 40 1 -0.2637 -7.1539 -1.7421 41 1 -0.4152 -8.2845 0.4401 42 1 0.6569 -7.2880 2.4202 43 1 1.8809 -5.1610 2.2180 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601357405.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:29 Heat of formation + Delta-G solvation = -113.935692 kcal Electronic energy + Delta-G solvation = -22765.239200 eV Core-core repulsion = 19387.142617 eV Total energy + Delta-G solvation = -3378.096583 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.06386 -39.76376 -38.09319 -36.83965 -35.30251 -34.71494 -32.65016 -31.70480 -30.66188 -30.08152 -26.81511 -24.95717 -23.78725 -23.35045 -22.23445 -21.46645 -21.04495 -18.70207 -18.23009 -17.84761 -17.62693 -17.11159 -16.89387 -16.43059 -16.22794 -15.77121 -15.47358 -14.94576 -14.68321 -14.57182 -14.29434 -14.19248 -13.99770 -13.70189 -13.50027 -12.93782 -12.91242 -12.74953 -12.66941 -12.57498 -12.44627 -12.14014 -11.87603 -11.85798 -11.66866 -11.58708 -11.34421 -10.86267 -10.79786 -10.55916 -9.93965 -9.75527 -9.51664 -8.20668 -6.31294 0.51314 0.55778 1.40196 1.41772 1.49736 1.79560 2.39078 2.39804 2.97529 3.13398 3.35632 3.84932 3.97676 4.01131 4.03771 4.15377 4.21314 4.32176 4.36561 4.43086 4.44749 4.52054 4.66047 4.74632 4.78596 4.80131 4.85391 4.87684 5.01397 5.12913 5.20152 5.29491 5.29972 5.40631 5.43337 5.61141 5.62595 5.64335 5.77454 5.92326 6.15780 6.20363 6.76072 6.81416 6.90081 7.37532 7.42429 8.89921 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.008697 B = 0.004997 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3218.667946 B = 5602.039244 C = 8305.215318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.011 3.989 3 Si 0.956 3.044 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.276 1.276 7 C -0.531 4.531 8 H 0.054 0.946 9 C 0.039 3.961 10 C 0.199 3.801 11 H 0.055 0.945 12 N -0.699 5.699 13 C 0.504 3.496 14 O -0.592 6.592 15 C -0.132 4.132 16 C -0.092 4.092 17 C -0.115 4.115 18 C 0.073 3.927 19 O -0.595 6.595 20 C -0.097 4.097 21 C -0.121 4.121 22 C -0.124 4.124 23 C -0.130 4.130 24 C -0.124 4.124 25 C -0.135 4.135 26 H 0.264 0.736 27 H 0.012 0.988 28 H 0.001 0.999 29 H 0.409 0.591 30 H 0.117 0.883 31 H 0.108 0.892 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.397 0.603 39 H 0.122 0.878 40 H 0.147 0.853 41 H 0.151 0.849 42 H 0.143 0.857 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.778 -13.787 -7.308 17.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.188 4.188 3 Si 0.782 3.218 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.201 1.201 7 C -0.569 4.569 8 H 0.072 0.928 9 C 0.001 3.999 10 C 0.093 3.907 11 H 0.073 0.927 12 N -0.349 5.349 13 C 0.293 3.707 14 O -0.473 6.473 15 C -0.171 4.171 16 C -0.131 4.131 17 C -0.153 4.153 18 C -0.005 4.005 19 O -0.404 6.404 20 C -0.098 4.098 21 C -0.139 4.139 22 C -0.142 4.142 23 C -0.148 4.148 24 C -0.142 4.142 25 C -0.154 4.154 26 H 0.073 0.927 27 H 0.030 0.970 28 H 0.019 0.981 29 H 0.245 0.755 30 H 0.135 0.865 31 H 0.126 0.874 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.247 0.753 39 H 0.140 0.860 40 H 0.165 0.835 41 H 0.169 0.831 42 H 0.161 0.839 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.426 -13.702 -6.822 17.473 hybrid contribution 0.444 1.185 0.383 1.322 sum 8.870 -12.517 -6.439 16.638 Atomic orbital electron populations 1.70061 1.07520 1.27845 1.51229 1.25788 0.95563 1.02697 0.94711 0.85633 0.78363 0.78834 0.79008 1.18894 1.20878 1.20136 1.21378 0.93017 0.91605 1.50909 0.92780 1.19116 0.93281 0.91206 0.96263 1.19691 0.92174 0.91890 0.86916 0.92717 1.45938 1.17414 1.58061 1.13448 1.21397 0.81279 0.76653 0.91387 1.90628 1.70286 1.47578 1.38830 1.21682 0.96389 1.04784 0.94263 1.21112 0.93951 1.00938 0.97057 1.21463 0.94712 1.01788 0.97287 1.22203 0.92457 0.99815 0.85983 1.86412 1.35138 1.83520 1.35310 1.20457 0.98322 0.96295 0.94741 1.21082 0.98071 0.96681 0.98113 1.21453 0.98861 0.94938 0.98942 1.21476 0.99931 1.00965 0.92399 1.21385 0.97534 0.95116 1.00159 1.21178 1.00561 0.96691 0.96970 0.92694 0.96958 0.98120 0.75544 0.86458 0.87352 0.92505 0.91948 0.90687 0.91207 0.93179 0.92805 0.75331 0.85968 0.83496 0.83096 0.83922 0.87142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.19 13.29 21.45 0.28 -53.91 16 2 C 0.01 0.61 5.46 84.65 0.46 1.08 16 3 Si 0.96 43.25 29.54 68.60 2.03 45.27 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 7 C -0.53 -28.85 8.84 25.60 0.23 -28.62 16 8 H 0.05 2.92 7.74 -2.91 -0.02 2.89 16 9 C 0.04 1.95 4.49 29.85 0.13 2.09 16 10 C 0.20 8.51 2.11 44.25 0.09 8.60 16 11 H 0.05 2.64 7.44 -2.39 -0.02 2.62 16 12 N -0.70 -25.35 4.04 -446.09 -1.80 -27.15 16 13 C 0.50 17.44 7.79 87.66 0.68 18.12 16 14 O -0.59 -25.11 15.64 -3.04 -0.05 -25.15 16 15 C -0.13 -3.12 5.70 29.85 0.17 -2.95 16 16 C -0.09 -2.11 4.50 30.59 0.14 -1.97 16 17 C -0.11 -2.16 5.58 30.59 0.17 -1.99 16 18 C 0.07 1.25 7.05 71.98 0.51 1.76 16 19 O -0.60 -10.48 13.66 -148.98 -2.04 -12.51 16 20 C -0.10 -3.73 4.91 -19.87 -0.10 -3.82 16 21 C -0.12 -4.02 9.32 22.27 0.21 -3.81 16 22 C -0.12 -3.38 10.05 22.27 0.22 -3.16 16 23 C -0.13 -3.33 10.05 22.27 0.22 -3.10 16 24 C -0.12 -3.60 10.05 22.27 0.22 -3.37 16 25 C -0.14 -4.90 9.67 22.27 0.22 -4.68 16 26 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 27 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 29 H 0.41 13.31 8.60 -92.71 -0.80 12.51 16 30 H 0.12 2.16 8.14 -2.38 -0.02 2.14 16 31 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.06 1.46 8.10 -2.38 -0.02 1.44 16 33 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.40 3.21 9.12 -74.06 -0.68 2.54 16 39 H 0.12 3.76 7.73 -2.91 -0.02 3.74 16 40 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 41 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 42 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 43 H 0.11 4.02 8.04 -2.91 -0.02 3.99 16 Total: -1.00 -71.67 365.54 1.53 -70.14 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: -0.47 Total: 29.13 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: 3.58 Total: -25.83 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -1.52 Total: -81.06 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -2.08 Total: -37.66 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -71.67 1.53 -70.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601357405.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.796 kcal (2) G-P(sol) polarization free energy of solvation -71.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds