Wall clock time and date at job start Tue Mar 31 2020 06:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46640 * 2 1 4 4 C 1.53000 * 109.46853 * 119.99425 * 2 1 3 5 5 C 1.50701 * 109.47473 * 295.00224 * 4 2 1 6 6 H 1.07999 * 119.99932 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00030 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99772 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00021 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46841 * 60.00334 * 9 7 5 11 11 H 1.48494 * 109.47188 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47117 * 300.00636 * 9 7 5 13 13 C 1.52990 * 109.47464 * 239.99899 * 2 1 3 14 14 N 1.46898 * 109.47345 * 64.99550 * 13 2 1 15 15 C 1.46898 * 111.00250 * 185.24102 * 14 13 2 16 16 H 1.08998 * 108.61201 * 35.77537 * 15 14 13 17 17 C 1.51869 * 108.55621 * 277.79575 * 15 14 13 18 18 C 1.53535 * 108.97555 * 178.69270 * 17 15 14 19 19 S 1.81616 * 107.27893 * 72.68592 * 18 17 15 20 20 C 1.76461 * 102.61083 * 313.56353 * 19 18 17 21 21 C 1.39635 * 117.72034 * 192.75662 * 20 19 18 22 22 C 1.37740 * 120.62876 * 180.72295 * 21 20 19 23 23 C 1.38345 * 119.50550 * 359.97438 * 22 21 20 24 24 C 1.37763 * 120.01628 * 359.73110 * 23 22 21 25 25 C 1.38181 * 122.30131 * 12.98144 * 20 19 18 26 26 H 1.09000 * 109.46640 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47508 * 300.00530 * 1 2 3 28 28 H 1.08999 * 109.46861 * 60.00747 * 1 2 3 29 29 H 1.09006 * 109.47029 * 55.00642 * 4 2 1 30 30 H 1.08997 * 109.46915 * 175.00502 * 4 2 1 31 31 H 0.96996 * 119.99500 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47188 * 305.00179 * 13 2 1 33 33 H 1.09000 * 109.47232 * 185.00022 * 13 2 1 34 34 H 1.00910 * 110.99881 * 61.29444 * 14 13 2 35 35 H 1.08999 * 109.55652 * 298.54645 * 17 15 14 36 36 H 1.09001 * 109.55132 * 58.85126 * 17 15 14 37 37 H 1.09005 * 109.88558 * 313.24303 * 18 17 15 38 38 H 1.08999 * 109.96255 * 192.16721 * 18 17 15 39 39 H 1.07996 * 119.68351 * 0.70798 * 21 20 19 40 40 H 1.07994 * 120.24909 * 180.02562 * 22 21 20 41 41 H 1.08004 * 119.99357 * 179.73976 * 23 22 21 42 42 H 1.07998 * 119.46723 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0799 0.9743 2.3757 7 6 1.9922 -0.4020 3.7284 8 7 2.6754 -1.5191 3.8513 9 14 1.4986 0.5631 5.2496 10 1 0.0187 0.6707 5.3089 11 1 1.9935 -0.1369 6.4622 12 1 2.0917 1.9232 5.1870 13 6 2.0401 -0.7212 -1.2491 14 7 1.6515 0.0373 -2.4456 15 6 2.0158 -0.6878 -3.6701 16 1 1.8809 -1.7552 -3.4954 17 6 3.4816 -0.4257 -3.9689 18 6 3.8813 -1.2059 -5.2294 19 16 3.1182 -0.3667 -6.6478 20 6 1.4633 -0.1032 -6.0948 21 6 0.5149 0.2826 -7.0443 22 6 -0.7911 0.5188 -6.6758 23 6 -1.1628 0.3707 -5.3515 24 6 -0.2311 -0.0158 -4.4132 25 6 1.0924 -0.2614 -4.7732 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.6054 -1.7198 1.2953 30 1 3.1263 -0.7993 1.2057 31 1 2.9226 -1.8420 4.7319 32 1 1.6055 -1.7198 -1.2951 33 1 3.1264 -0.7994 -1.2054 34 1 2.0595 0.9602 -2.4370 35 1 3.6350 0.6404 -4.1357 36 1 4.0902 -0.7561 -3.1271 37 1 3.5148 -2.2303 -5.1632 38 1 4.9659 -1.2065 -5.3384 39 1 0.8083 0.3972 -8.0773 40 1 -1.5197 0.8165 -7.4153 41 1 -2.1838 0.5579 -5.0531 42 1 -0.5310 -0.1291 -3.3820 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602506516.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:41 Heat of formation + Delta-G solvation = 5.741260 kcal Electronic energy + Delta-G solvation = -20687.070082 eV Core-core repulsion = 17756.915952 eV Total energy + Delta-G solvation = -2930.154130 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 4.94 seconds Orbital eigenvalues (eV) -39.71868 -37.43753 -35.32137 -32.82770 -31.58692 -30.82279 -30.68747 -27.03446 -26.16851 -24.40381 -23.26487 -22.68035 -22.28261 -20.71048 -19.15329 -17.71474 -16.40304 -15.98161 -15.86080 -15.64081 -14.92542 -14.64409 -14.38504 -14.17162 -13.74628 -13.40978 -13.30329 -12.96260 -12.84131 -12.64045 -12.41609 -12.07062 -11.60199 -11.53071 -11.38723 -11.33379 -10.90445 -10.85321 -10.79099 -10.32724 -10.31319 -10.21981 -9.75921 -9.72352 -9.17345 -9.01106 -8.80185 -8.34618 -8.24248 -7.53296 -5.99647 -4.00901 1.11862 1.32391 1.44549 2.21452 3.33146 3.37650 3.40090 3.62393 4.17461 4.42788 4.47120 4.49863 4.76943 4.89107 4.99593 5.04154 5.25666 5.30353 5.35616 5.36276 5.45884 5.57008 5.67971 5.69200 5.82974 5.88893 5.98554 6.10749 6.21904 6.31525 6.43734 6.48006 6.54233 6.64635 6.88584 6.95710 7.13350 7.15430 7.26936 7.51870 7.66296 7.81931 8.00228 8.44112 9.05268 9.62665 11.11853 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.026480 B = 0.003220 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.154782 B = 8692.385266 C = 9534.583356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.081 4.081 3 H 0.054 0.946 4 C 0.028 3.972 5 C -0.514 4.514 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.063 3.937 14 N -0.676 5.676 15 C 0.122 3.878 16 H 0.088 0.912 17 C -0.153 4.153 18 C -0.098 4.098 19 S -0.137 6.137 20 C -0.073 4.073 21 C -0.110 4.110 22 C -0.107 4.107 23 C -0.130 4.130 24 C -0.073 4.073 25 C -0.075 4.075 26 H 0.039 0.961 27 H 0.053 0.947 28 H 0.042 0.958 29 H 0.016 0.984 30 H 0.012 0.988 31 H 0.260 0.740 32 H 0.067 0.933 33 H 0.027 0.973 34 H 0.342 0.658 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.930 1.743 -21.859 22.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.100 4.100 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.066 4.066 14 N -0.306 5.306 15 C 0.012 3.988 16 H 0.106 0.894 17 C -0.193 4.193 18 C -0.247 4.247 19 S 0.105 5.895 20 C -0.186 4.186 21 C -0.134 4.134 22 C -0.127 4.127 23 C -0.151 4.151 24 C -0.093 4.093 25 C -0.081 4.081 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.034 0.966 30 H 0.030 0.970 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.045 0.955 34 H 0.160 0.840 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.129 0.871 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.856 1.629 -22.730 22.863 hybrid contribution 0.210 0.231 2.078 2.101 sum -1.646 1.860 -20.652 20.800 Atomic orbital electron populations 1.21592 0.95735 1.00498 1.00191 1.21177 0.95989 0.98983 0.93814 0.92762 1.19112 0.95861 0.95547 0.90436 1.21195 1.34705 1.08307 0.90986 0.92616 1.25018 0.95314 0.95084 0.99101 1.69955 1.39026 1.21224 1.23505 0.86689 0.78928 0.80109 0.82472 1.20243 1.21370 1.20302 1.22239 0.97416 0.97537 0.89373 1.60635 1.63640 1.05846 1.00446 1.20082 0.90153 0.99171 0.89437 0.89407 1.22395 0.97983 1.01372 0.97560 1.23709 1.03785 1.01824 0.95339 1.85407 1.04890 1.74086 1.25166 1.21327 0.96581 1.05231 0.95493 1.20785 0.92613 1.01654 0.98299 1.21012 0.95432 0.99796 0.96486 1.21170 0.99825 1.00795 0.93266 1.21424 0.91624 0.95690 1.00516 1.19571 0.95740 1.01299 0.91496 0.94215 0.92753 0.93941 0.96610 0.96986 0.93033 0.91481 0.95491 0.83970 0.90104 0.89501 0.88997 0.87149 0.86004 0.85853 0.85938 0.84109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.29 8.89 37.16 0.33 -1.96 16 2 C -0.08 -1.57 2.52 -90.62 -0.23 -1.80 16 3 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.20 8.41 -34.44 -0.29 -14.49 16 6 H 0.06 1.50 7.06 -52.49 -0.37 1.13 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 13 C 0.06 0.99 4.84 -3.83 -0.02 0.98 16 14 N -0.68 -8.96 4.31 -108.91 -0.47 -9.42 16 15 C 0.12 1.45 2.23 -69.76 -0.16 1.29 16 16 H 0.09 1.09 7.67 -51.93 -0.40 0.69 16 17 C -0.15 -1.59 5.01 -27.03 -0.14 -1.73 16 18 C -0.10 -0.91 6.53 37.43 0.24 -0.67 16 19 S -0.14 -1.49 21.99 -107.50 -2.36 -3.85 16 20 C -0.07 -0.88 6.05 -39.08 -0.24 -1.12 16 21 C -0.11 -1.21 9.65 -39.24 -0.38 -1.58 16 22 C -0.11 -1.07 10.06 -39.72 -0.40 -1.47 16 23 C -0.13 -1.39 10.03 -39.72 -0.40 -1.79 16 24 C -0.07 -0.89 9.11 -39.35 -0.36 -1.24 16 25 C -0.07 -0.92 5.64 -104.55 -0.59 -1.51 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 28 H 0.04 0.69 7.75 -51.93 -0.40 0.29 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 32 H 0.07 1.09 7.90 -51.93 -0.41 0.68 16 33 H 0.03 0.43 7.29 -51.93 -0.38 0.05 16 34 H 0.34 4.46 8.53 -39.29 -0.34 4.13 16 35 H 0.08 0.88 8.01 -51.93 -0.42 0.46 16 36 H 0.09 0.91 7.25 -51.93 -0.38 0.53 16 37 H 0.09 0.83 8.08 -51.93 -0.42 0.41 16 38 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.12 1.15 8.05 -52.49 -0.42 0.73 16 40 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 42 H 0.14 1.81 7.26 -52.49 -0.38 1.43 16 LS Contribution 346.27 15.07 5.22 5.22 Total: -1.00 -29.27 346.27 -11.50 -40.77 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -6.77 Total: 1.82 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: -2.84 Total: -25.03 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.27 Total: -35.46 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.36 Total: -3.85 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.27 -11.50 -40.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602506516.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.515 kcal (2) G-P(sol) polarization free energy of solvation -29.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.94 seconds