Wall clock time and date at job start Tue Mar 31 2020 06:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46640 * 2 1 4 4 C 1.53000 * 109.46853 * 119.99425 * 2 1 3 5 5 C 1.50701 * 109.47473 * 295.00224 * 4 2 1 6 6 H 1.07999 * 119.99932 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00030 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99772 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00021 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46841 * 60.00334 * 9 7 5 11 11 H 1.48494 * 109.47188 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47117 * 300.00636 * 9 7 5 13 13 C 1.52990 * 109.47464 * 239.99899 * 2 1 3 14 14 N 1.46898 * 109.47345 * 64.99550 * 13 2 1 15 15 C 1.46898 * 111.00250 * 185.24102 * 14 13 2 16 16 H 1.08998 * 108.61201 * 35.77537 * 15 14 13 17 17 C 1.51869 * 108.55621 * 277.79575 * 15 14 13 18 18 C 1.53535 * 108.97555 * 178.69270 * 17 15 14 19 19 S 1.81616 * 107.27893 * 72.68592 * 18 17 15 20 20 C 1.76461 * 102.61083 * 313.56353 * 19 18 17 21 21 C 1.39635 * 117.72034 * 192.75662 * 20 19 18 22 22 C 1.37740 * 120.62876 * 180.72295 * 21 20 19 23 23 C 1.38345 * 119.50550 * 359.97438 * 22 21 20 24 24 C 1.37763 * 120.01628 * 359.73110 * 23 22 21 25 25 C 1.38181 * 122.30131 * 12.98144 * 20 19 18 26 26 H 1.09000 * 109.46640 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47508 * 300.00530 * 1 2 3 28 28 H 1.08999 * 109.46861 * 60.00747 * 1 2 3 29 29 H 1.09006 * 109.47029 * 55.00642 * 4 2 1 30 30 H 1.08997 * 109.46915 * 175.00502 * 4 2 1 31 31 H 0.96996 * 119.99500 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47188 * 305.00179 * 13 2 1 33 33 H 1.09000 * 109.47232 * 185.00022 * 13 2 1 34 34 H 1.00910 * 110.99881 * 61.29444 * 14 13 2 35 35 H 1.08999 * 109.55652 * 298.54645 * 17 15 14 36 36 H 1.09001 * 109.55132 * 58.85126 * 17 15 14 37 37 H 1.09005 * 109.88558 * 313.24303 * 18 17 15 38 38 H 1.08999 * 109.96255 * 192.16721 * 18 17 15 39 39 H 1.07996 * 119.68351 * 0.70798 * 21 20 19 40 40 H 1.07994 * 120.24909 * 180.02562 * 22 21 20 41 41 H 1.08004 * 119.99357 * 179.73976 * 23 22 21 42 42 H 1.07998 * 119.46723 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0799 0.9743 2.3757 7 6 1.9922 -0.4020 3.7284 8 7 2.6754 -1.5191 3.8513 9 14 1.4986 0.5631 5.2496 10 1 0.0187 0.6707 5.3089 11 1 1.9935 -0.1369 6.4622 12 1 2.0917 1.9232 5.1870 13 6 2.0401 -0.7212 -1.2491 14 7 1.6515 0.0373 -2.4456 15 6 2.0158 -0.6878 -3.6701 16 1 1.8809 -1.7552 -3.4954 17 6 3.4816 -0.4257 -3.9689 18 6 3.8813 -1.2059 -5.2294 19 16 3.1182 -0.3667 -6.6478 20 6 1.4633 -0.1032 -6.0948 21 6 0.5149 0.2826 -7.0443 22 6 -0.7911 0.5188 -6.6758 23 6 -1.1628 0.3707 -5.3515 24 6 -0.2311 -0.0158 -4.4132 25 6 1.0924 -0.2614 -4.7732 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.6054 -1.7198 1.2953 30 1 3.1263 -0.7993 1.2057 31 1 2.9226 -1.8420 4.7319 32 1 1.6055 -1.7198 -1.2951 33 1 3.1264 -0.7994 -1.2054 34 1 2.0595 0.9602 -2.4370 35 1 3.6350 0.6404 -4.1357 36 1 4.0902 -0.7561 -3.1271 37 1 3.5148 -2.2303 -5.1632 38 1 4.9659 -1.2065 -5.3384 39 1 0.8083 0.3972 -8.0773 40 1 -1.5197 0.8165 -7.4153 41 1 -2.1838 0.5579 -5.0531 42 1 -0.5310 -0.1291 -3.3820 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602506516.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:31 Heat of formation + Delta-G solvation = -8.516177 kcal Electronic energy + Delta-G solvation = -20687.688331 eV Core-core repulsion = 17756.915952 eV Total energy + Delta-G solvation = -2930.772379 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -40.61946 -38.55807 -36.75744 -34.60787 -32.91663 -31.68949 -31.63096 -28.89765 -27.41553 -25.84206 -24.22922 -23.89271 -23.46976 -21.66815 -20.70664 -18.64945 -18.40557 -16.93827 -16.74843 -16.69841 -16.41458 -16.04291 -15.55629 -15.42384 -14.79443 -14.46564 -14.29475 -14.23565 -14.08366 -13.82716 -13.48635 -13.40653 -13.16226 -13.02897 -12.74636 -12.60796 -12.37594 -12.22740 -12.17949 -12.02235 -11.68619 -11.49540 -11.12410 -11.04178 -10.88931 -10.57175 -10.52370 -9.67848 -9.35433 -8.36732 -8.17281 -6.26049 0.27469 0.47404 0.63786 1.39968 1.40406 1.42674 1.50349 2.42116 2.76512 3.12893 3.16402 3.56543 3.67085 3.91584 4.08920 4.12910 4.19106 4.22328 4.33770 4.43643 4.50242 4.53985 4.59646 4.69351 4.76616 4.84792 4.89269 4.97426 5.00574 5.04229 5.15432 5.29153 5.39816 5.47818 5.52225 5.55915 5.57777 5.67573 5.82428 5.90004 6.00522 6.09177 6.31796 6.40863 6.90081 7.42241 8.94488 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.026480 B = 0.003220 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.154782 B = 8692.385266 C = 9534.583356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.072 4.072 3 H 0.053 0.947 4 C 0.033 3.967 5 C -0.529 4.529 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.959 3.041 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.079 3.921 14 N -0.671 5.671 15 C 0.127 3.873 16 H 0.081 0.919 17 C -0.147 4.147 18 C -0.092 4.092 19 S -0.145 6.145 20 C -0.087 4.087 21 C -0.119 4.119 22 C -0.104 4.104 23 C -0.134 4.134 24 C -0.088 4.088 25 C -0.088 4.088 26 H 0.034 0.966 27 H 0.035 0.965 28 H 0.068 0.932 29 H -0.011 1.011 30 H -0.013 1.013 31 H 0.262 0.738 32 H 0.062 0.938 33 H 0.025 0.975 34 H 0.345 0.655 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.152 0.848 41 H 0.141 0.859 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.663 2.825 -23.055 23.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 H 0.071 0.929 4 C -0.004 4.004 5 C -0.567 4.567 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.193 1.193 13 C -0.050 4.050 14 N -0.300 5.300 15 C 0.017 3.983 16 H 0.099 0.901 17 C -0.187 4.187 18 C -0.241 4.241 19 S 0.097 5.903 20 C -0.200 4.200 21 C -0.142 4.142 22 C -0.124 4.124 23 C -0.154 4.154 24 C -0.108 4.108 25 C -0.094 4.094 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.008 0.992 30 H 0.005 0.995 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.044 0.956 34 H 0.164 0.836 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.147 0.853 39 H 0.153 0.847 40 H 0.169 0.831 41 H 0.159 0.841 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.595 2.723 -23.945 24.239 hybrid contribution 0.423 -0.118 2.380 2.420 sum -2.173 2.605 -21.565 21.830 Atomic orbital electron populations 1.21488 0.94787 1.00282 1.00479 1.20975 0.96632 0.98420 0.93041 0.92863 1.19003 0.94121 0.94626 0.92688 1.21623 1.34389 1.08584 0.92139 0.92173 1.25927 0.95299 0.96075 1.02583 1.70090 1.40309 1.22921 1.24298 0.85597 0.78937 0.78816 0.78299 1.19272 1.21089 1.19280 1.21892 0.97052 0.97004 0.89035 1.60514 1.63703 1.05774 1.00027 1.20039 0.91148 0.98502 0.88627 0.90070 1.22304 0.96882 1.01399 0.98160 1.23750 1.04812 1.01565 0.93992 1.85391 1.04606 1.74333 1.25937 1.21509 0.97344 1.05580 0.95592 1.21075 0.92946 1.01326 0.98819 1.21351 0.95651 0.98565 0.96784 1.21432 1.00448 1.00069 0.93406 1.21453 0.92082 0.96791 1.00506 1.19581 0.95864 1.02239 0.91756 0.94679 0.94609 0.91335 0.99231 0.99490 0.92973 0.91934 0.95647 0.83601 0.90355 0.89481 0.88588 0.85283 0.84727 0.83052 0.84111 0.85114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.16 8.89 71.98 0.64 -3.52 16 2 C -0.07 -2.81 2.52 -10.80 -0.03 -2.84 16 3 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 4 C 0.03 1.71 4.45 29.85 0.13 1.84 16 5 C -0.53 -29.64 8.41 25.60 0.22 -29.43 16 6 H 0.06 3.24 7.06 -2.91 -0.02 3.22 16 7 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 8 N -0.94 -56.89 13.29 21.45 0.28 -56.61 16 9 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 12 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 13 C 0.08 2.51 4.84 86.30 0.42 2.92 16 14 N -0.67 -17.28 4.31 -498.49 -2.15 -19.42 16 15 C 0.13 2.92 2.23 43.59 0.10 3.01 16 16 H 0.08 1.98 7.67 -2.39 -0.02 1.96 16 17 C -0.15 -2.91 5.01 30.40 0.15 -2.76 16 18 C -0.09 -1.59 6.53 72.16 0.47 -1.12 16 19 S -0.14 -2.93 21.99 -56.49 -1.24 -4.18 16 20 C -0.09 -1.98 6.05 22.59 0.14 -1.84 16 21 C -0.12 -2.36 9.65 22.49 0.22 -2.15 16 22 C -0.10 -1.82 10.06 22.18 0.22 -1.60 16 23 C -0.13 -2.59 10.03 22.18 0.22 -2.37 16 24 C -0.09 -2.06 9.11 22.42 0.20 -1.85 16 25 C -0.09 -2.08 5.64 -19.82 -0.11 -2.19 16 26 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.03 1.42 6.95 -2.39 -0.02 1.41 16 28 H 0.07 2.15 7.75 -2.39 -0.02 2.14 16 29 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 30 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 31 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 32 H 0.06 2.05 7.90 -2.39 -0.02 2.03 16 33 H 0.03 0.81 7.29 -2.39 -0.02 0.79 16 34 H 0.35 8.66 8.53 -89.69 -0.76 7.90 16 35 H 0.08 1.61 8.01 -2.39 -0.02 1.59 16 36 H 0.09 1.73 7.25 -2.39 -0.02 1.72 16 37 H 0.10 1.60 8.08 -2.38 -0.02 1.58 16 38 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.13 2.26 8.05 -2.91 -0.02 2.24 16 40 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 41 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 42 H 0.13 3.25 7.26 -2.91 -0.02 3.23 16 Total: -1.00 -63.06 346.27 2.61 -60.45 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.23 Total: 16.97 kcal Atomic # 6 Polarization: -46.97 SS G_CDS: 3.45 Total: -43.52 kcal Atomic # 7 Polarization: -74.17 SS G_CDS: -1.86 Total: -76.03 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: -2.93 SS G_CDS: -1.24 Total: -4.18 kcal Total: -63.06 2.61 -60.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602506516.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.937 kcal (2) G-P(sol) polarization free energy of solvation -63.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds