Wall clock time and date at job start Tue Mar 31 2020 06:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47272 * 2 1 4 4 C 1.53002 * 109.47049 * 119.99480 * 2 1 3 5 5 C 1.50697 * 109.47395 * 295.00561 * 4 2 1 6 6 H 1.08001 * 120.00018 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00132 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99944 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99892 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.47077 * 90.00053 * 9 7 5 11 11 H 1.48495 * 109.46780 * 209.99786 * 9 7 5 12 12 H 1.48501 * 109.47373 * 330.00118 * 9 7 5 13 13 C 1.52997 * 109.47422 * 239.99465 * 2 1 3 14 14 N 1.46907 * 109.46776 * 65.00323 * 13 2 1 15 15 C 1.46903 * 110.99510 * 185.56949 * 14 13 2 16 16 H 1.09009 * 108.60177 * 185.18622 * 15 14 13 17 17 C 1.51863 * 108.65780 * 303.21127 * 15 14 13 18 18 C 1.53529 * 108.97943 * 181.32630 * 17 15 14 19 19 S 1.81629 * 107.26744 * 287.29968 * 18 17 15 20 20 C 1.76456 * 102.60417 * 46.45309 * 19 18 17 21 21 C 1.39628 * 117.71928 * 167.17003 * 20 19 18 22 22 C 1.37741 * 120.63303 * 179.54073 * 21 20 19 23 23 C 1.38342 * 119.50424 * 359.95367 * 22 21 20 24 24 C 1.37756 * 120.01157 * 0.23855 * 23 22 21 25 25 C 1.38184 * 122.30119 * 347.08721 * 20 19 18 26 26 H 1.09004 * 109.46973 * 60.00475 * 1 2 3 27 27 H 1.08995 * 109.47178 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47411 * 300.00554 * 1 2 3 29 29 H 1.09003 * 109.46983 * 54.99990 * 4 2 1 30 30 H 1.09001 * 109.47400 * 174.99570 * 4 2 1 31 31 H 0.97004 * 120.00133 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47495 * 305.00576 * 13 2 1 33 33 H 1.09005 * 109.47502 * 184.99937 * 13 2 1 34 34 H 1.00899 * 110.99796 * 61.61304 * 14 13 2 35 35 H 1.09001 * 109.55131 * 301.17841 * 17 15 14 36 36 H 1.08997 * 109.55023 * 61.47126 * 17 15 14 37 37 H 1.08998 * 109.89679 * 46.73652 * 18 17 15 38 38 H 1.09000 * 109.89745 * 167.78751 * 18 17 15 39 39 H 1.08002 * 119.68255 * 359.56521 * 21 20 19 40 40 H 1.07996 * 120.24695 * 179.91055 * 22 21 20 41 41 H 1.08003 * 119.99450 * 180.25311 * 23 22 21 42 42 H 1.08005 * 119.46638 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0804 0.9746 2.3757 7 6 1.9922 -0.4021 3.7284 8 7 1.6446 0.2774 4.7994 9 14 2.9614 -1.9894 3.9031 10 1 4.4151 -1.6869 3.8790 11 1 2.6130 -2.6429 5.1902 12 1 2.6267 -2.9001 2.7789 13 6 2.0400 -0.7213 -1.2491 14 7 1.6514 0.0374 -2.4456 15 6 2.0088 -0.6914 -3.6700 16 1 1.7893 -0.0570 -4.5289 17 6 3.4998 -0.9787 -3.6468 18 6 3.8874 -1.7113 -4.9391 19 16 3.2411 -3.4041 -4.8139 20 6 1.5908 -3.1451 -4.2455 21 6 0.7087 -4.2262 -4.2978 22 6 -0.5908 -4.0935 -3.8607 23 6 -1.0220 -2.8761 -3.3651 24 6 -0.1554 -1.8063 -3.3158 25 6 1.1602 -1.9255 -3.7590 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6053 -1.7197 1.2953 30 1 3.1263 -0.7995 1.2057 31 1 1.8912 -0.0459 5.6801 32 1 1.6054 -1.7199 -1.2951 33 1 3.1264 -0.7996 -1.2055 34 1 2.0637 0.9583 -2.4395 35 1 4.0510 -0.0407 -3.5797 36 1 3.7372 -1.6052 -2.7870 37 1 3.4441 -1.2077 -5.7982 38 1 4.9723 -1.7339 -5.0417 39 1 1.0487 -5.1757 -4.6842 40 1 -1.2682 -4.9335 -3.9053 41 1 -2.0381 -2.7643 -3.0164 42 1 -0.5012 -0.8600 -2.9267 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602506517.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:58 Heat of formation + Delta-G solvation = 12.959213 kcal Electronic energy + Delta-G solvation = -21287.532985 eV Core-core repulsion = 18357.691849 eV Total energy + Delta-G solvation = -2929.841136 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 3.66 seconds Orbital eigenvalues (eV) -39.88049 -37.44244 -35.33048 -32.73503 -31.64059 -30.79915 -30.65138 -27.61367 -26.25654 -24.52603 -23.26168 -22.63806 -22.24899 -20.14180 -19.27321 -17.63154 -16.81049 -16.07002 -15.93948 -15.72333 -14.85383 -14.56758 -14.46047 -14.02293 -13.79517 -13.44528 -13.28494 -13.11175 -12.70094 -12.65309 -12.63435 -12.24225 -11.78850 -11.61985 -11.48320 -11.27793 -10.94329 -10.87129 -10.61848 -10.38320 -10.25611 -9.92255 -9.72802 -9.65624 -9.41584 -9.05729 -8.74011 -8.50532 -8.30869 -7.50221 -6.01231 -3.97962 1.15845 1.36011 1.45494 2.23235 3.31881 3.39803 3.44458 3.66528 4.14519 4.44507 4.47165 4.47953 4.68194 4.92055 4.99778 5.04394 5.23958 5.30156 5.32543 5.35356 5.45674 5.53535 5.60692 5.74741 5.76571 5.93076 6.00236 6.03639 6.23577 6.30251 6.39841 6.46273 6.53894 6.59830 6.84261 6.91709 7.01916 7.11396 7.18592 7.29801 7.45166 7.53271 7.83864 8.58208 9.04487 9.62050 11.12187 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.017761 B = 0.004318 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.075881 B = 6483.620636 C = 6703.743534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.071 4.071 3 H 0.059 0.941 4 C -0.009 4.009 5 C -0.511 4.511 6 H 0.074 0.926 7 C 0.066 3.934 8 N -0.905 5.905 9 Si 0.876 3.124 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.057 3.943 14 N -0.675 5.675 15 C 0.124 3.876 16 H 0.088 0.912 17 C -0.160 4.160 18 C -0.098 4.098 19 S -0.136 6.136 20 C -0.073 4.073 21 C -0.110 4.110 22 C -0.105 4.105 23 C -0.128 4.128 24 C -0.073 4.073 25 C -0.076 4.076 26 H 0.043 0.957 27 H 0.038 0.962 28 H 0.058 0.942 29 H 0.015 0.985 30 H 0.007 0.993 31 H 0.262 0.738 32 H 0.069 0.931 33 H 0.027 0.973 34 H 0.344 0.656 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.307 -5.282 -22.535 23.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.090 4.090 3 H 0.077 0.923 4 C -0.047 4.047 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.135 4.135 8 N -0.545 5.545 9 Si 0.704 3.296 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.191 1.191 13 C -0.071 4.071 14 N -0.304 5.304 15 C 0.014 3.986 16 H 0.106 0.894 17 C -0.200 4.200 18 C -0.247 4.247 19 S 0.106 5.894 20 C -0.186 4.186 21 C -0.133 4.133 22 C -0.125 4.125 23 C -0.148 4.148 24 C -0.093 4.093 25 C -0.083 4.083 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.033 0.967 30 H 0.025 0.975 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.162 0.838 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.360 -6.485 -22.615 23.529 hybrid contribution 0.929 0.333 0.621 1.166 sum 1.289 -6.152 -21.994 22.874 Atomic orbital electron populations 1.21596 0.95332 1.00549 1.00591 1.20972 0.96312 0.98911 0.92792 0.92272 1.19605 0.95294 0.96246 0.93527 1.21121 1.35298 1.09455 0.89074 0.90835 1.25016 0.95695 0.96818 0.95974 1.69914 1.47276 1.39270 0.97999 0.86839 0.80604 0.84670 0.77537 1.20444 1.21436 1.19053 1.22258 0.97333 0.98039 0.89477 1.60667 1.63393 1.05576 1.00740 1.20065 0.90562 0.93143 0.94819 0.89393 1.22457 0.97980 1.02169 0.97396 1.23688 1.04429 0.95191 1.01350 1.85452 1.08361 1.12256 1.83299 1.21302 0.96699 0.96298 1.04326 1.20787 0.93237 0.97400 1.01872 1.21023 0.95251 0.97762 0.98471 1.21167 1.00129 0.93267 1.00280 1.21412 0.92049 0.99866 0.95982 1.19441 0.95696 0.92876 1.00271 0.93757 0.94267 0.92288 0.96692 0.97511 0.92847 0.91271 0.95437 0.83765 0.89866 0.89504 0.89130 0.87264 0.85967 0.85770 0.85841 0.84141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.30 8.89 37.16 0.33 -1.97 16 2 C -0.07 -1.36 2.52 -90.62 -0.23 -1.59 16 3 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 4 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 5 C -0.51 -14.45 8.96 -34.44 -0.31 -14.75 16 6 H 0.07 2.22 7.30 -52.49 -0.38 1.84 16 7 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 8 N -0.91 -28.04 13.96 55.43 0.77 -27.26 16 9 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 12 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 13 C 0.06 0.91 4.08 -3.82 -0.02 0.89 16 14 N -0.67 -8.42 4.57 -108.90 -0.50 -8.92 16 15 C 0.12 1.39 2.65 -69.76 -0.18 1.20 16 16 H 0.09 0.88 8.14 -51.92 -0.42 0.45 16 17 C -0.16 -1.64 4.68 -27.03 -0.13 -1.76 16 18 C -0.10 -0.88 6.53 37.43 0.24 -0.64 16 19 S -0.14 -1.56 21.99 -107.50 -2.36 -3.92 16 20 C -0.07 -0.94 6.05 -39.08 -0.24 -1.17 16 21 C -0.11 -1.32 9.65 -39.24 -0.38 -1.70 16 22 C -0.11 -1.17 10.06 -39.72 -0.40 -1.57 16 23 C -0.13 -1.51 10.03 -39.72 -0.40 -1.91 16 24 C -0.07 -0.94 8.50 -39.35 -0.33 -1.27 16 25 C -0.08 -0.97 4.55 -104.55 -0.48 -1.45 16 26 H 0.04 0.71 7.75 -51.93 -0.40 0.31 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 1.23 6.95 -51.93 -0.36 0.87 16 29 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 30 H 0.01 0.16 7.57 -51.93 -0.39 -0.23 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.07 1.20 6.77 -51.93 -0.35 0.85 16 33 H 0.03 0.44 6.55 -51.93 -0.34 0.10 16 34 H 0.34 3.88 8.87 -39.29 -0.35 3.53 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.09 1.09 6.35 -51.93 -0.33 0.76 16 37 H 0.09 0.73 8.08 -51.93 -0.42 0.31 16 38 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.12 1.29 8.05 -52.49 -0.42 0.87 16 40 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 41 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 42 H 0.14 1.83 7.27 -52.48 -0.38 1.45 16 LS Contribution 338.73 15.07 5.10 5.10 Total: -1.00 -30.64 338.73 -10.99 -41.63 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.63 Total: 2.14 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: -2.71 Total: -26.18 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.28 Total: -36.18 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.36 Total: -3.92 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.64 -10.99 -41.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602506517.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.591 kcal (2) G-P(sol) polarization free energy of solvation -30.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.66 seconds