Wall clock time and date at job start Tue Mar 31 2020 06:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47272 * 2 1 4 4 C 1.53002 * 109.47049 * 119.99480 * 2 1 3 5 5 C 1.50697 * 109.47395 * 295.00561 * 4 2 1 6 6 H 1.08001 * 120.00018 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00132 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99944 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99892 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.47077 * 90.00053 * 9 7 5 11 11 H 1.48495 * 109.46780 * 209.99786 * 9 7 5 12 12 H 1.48501 * 109.47373 * 330.00118 * 9 7 5 13 13 C 1.52997 * 109.47422 * 239.99465 * 2 1 3 14 14 N 1.46907 * 109.46776 * 65.00323 * 13 2 1 15 15 C 1.46903 * 110.99510 * 185.56949 * 14 13 2 16 16 H 1.09009 * 108.60177 * 185.18622 * 15 14 13 17 17 C 1.51863 * 108.65780 * 303.21127 * 15 14 13 18 18 C 1.53529 * 108.97943 * 181.32630 * 17 15 14 19 19 S 1.81629 * 107.26744 * 287.29968 * 18 17 15 20 20 C 1.76456 * 102.60417 * 46.45309 * 19 18 17 21 21 C 1.39628 * 117.71928 * 167.17003 * 20 19 18 22 22 C 1.37741 * 120.63303 * 179.54073 * 21 20 19 23 23 C 1.38342 * 119.50424 * 359.95367 * 22 21 20 24 24 C 1.37756 * 120.01157 * 0.23855 * 23 22 21 25 25 C 1.38184 * 122.30119 * 347.08721 * 20 19 18 26 26 H 1.09004 * 109.46973 * 60.00475 * 1 2 3 27 27 H 1.08995 * 109.47178 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47411 * 300.00554 * 1 2 3 29 29 H 1.09003 * 109.46983 * 54.99990 * 4 2 1 30 30 H 1.09001 * 109.47400 * 174.99570 * 4 2 1 31 31 H 0.97004 * 120.00133 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47495 * 305.00576 * 13 2 1 33 33 H 1.09005 * 109.47502 * 184.99937 * 13 2 1 34 34 H 1.00899 * 110.99796 * 61.61304 * 14 13 2 35 35 H 1.09001 * 109.55131 * 301.17841 * 17 15 14 36 36 H 1.08997 * 109.55023 * 61.47126 * 17 15 14 37 37 H 1.08998 * 109.89679 * 46.73652 * 18 17 15 38 38 H 1.09000 * 109.89745 * 167.78751 * 18 17 15 39 39 H 1.08002 * 119.68255 * 359.56521 * 21 20 19 40 40 H 1.07996 * 120.24695 * 179.91055 * 22 21 20 41 41 H 1.08003 * 119.99450 * 180.25311 * 23 22 21 42 42 H 1.08005 * 119.46638 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0804 0.9746 2.3757 7 6 1.9922 -0.4021 3.7284 8 7 1.6446 0.2774 4.7994 9 14 2.9614 -1.9894 3.9031 10 1 4.4151 -1.6869 3.8790 11 1 2.6130 -2.6429 5.1902 12 1 2.6267 -2.9001 2.7789 13 6 2.0400 -0.7213 -1.2491 14 7 1.6514 0.0374 -2.4456 15 6 2.0088 -0.6914 -3.6700 16 1 1.7893 -0.0570 -4.5289 17 6 3.4998 -0.9787 -3.6468 18 6 3.8874 -1.7113 -4.9391 19 16 3.2411 -3.4041 -4.8139 20 6 1.5908 -3.1451 -4.2455 21 6 0.7087 -4.2262 -4.2978 22 6 -0.5908 -4.0935 -3.8607 23 6 -1.0220 -2.8761 -3.3651 24 6 -0.1554 -1.8063 -3.3158 25 6 1.1602 -1.9255 -3.7590 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6053 -1.7197 1.2953 30 1 3.1263 -0.7995 1.2057 31 1 1.8912 -0.0459 5.6801 32 1 1.6054 -1.7199 -1.2951 33 1 3.1264 -0.7996 -1.2055 34 1 2.0637 0.9583 -2.4395 35 1 4.0510 -0.0407 -3.5797 36 1 3.7372 -1.6052 -2.7870 37 1 3.4441 -1.2077 -5.7982 38 1 4.9723 -1.7339 -5.0417 39 1 1.0487 -5.1757 -4.6842 40 1 -1.2682 -4.9335 -3.9053 41 1 -2.0381 -2.7643 -3.0164 42 1 -0.5012 -0.8600 -2.9267 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602506517.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:50 Heat of formation + Delta-G solvation = -3.740791 kcal Electronic energy + Delta-G solvation = -21288.257151 eV Core-core repulsion = 18357.691849 eV Total energy + Delta-G solvation = -2930.565302 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 4.33 seconds Orbital eigenvalues (eV) -40.79997 -38.51963 -36.75774 -34.54817 -32.98794 -31.67785 -31.60607 -29.46279 -27.48863 -25.75198 -24.22286 -23.84228 -23.52695 -21.14441 -20.82506 -18.97493 -18.45585 -17.09423 -16.87701 -16.65754 -16.31461 -15.94361 -15.51428 -15.46983 -14.96343 -14.69968 -14.30753 -14.20541 -14.12522 -13.78955 -13.65882 -13.50633 -13.38435 -12.98698 -12.84745 -12.45046 -12.33648 -12.17051 -12.13478 -11.82699 -11.59869 -11.43850 -11.21083 -11.07994 -11.03035 -10.74327 -10.58290 -9.64901 -9.34221 -8.36847 -8.27102 -6.28619 0.27361 0.45945 0.63771 1.32559 1.35173 1.42599 1.46514 2.35735 2.77022 3.08171 3.15766 3.60740 3.70355 3.87964 4.07310 4.11876 4.21468 4.22973 4.32308 4.46393 4.49912 4.51856 4.57069 4.69417 4.77679 4.84278 4.88212 4.91441 4.98277 5.09984 5.10517 5.13625 5.35320 5.39469 5.42842 5.53263 5.55616 5.66240 5.72357 5.73384 6.01483 6.05753 6.34092 6.51162 6.78862 7.34936 8.89570 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.017761 B = 0.004318 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.075881 B = 6483.620636 C = 6703.743534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.066 4.066 3 H 0.055 0.945 4 C -0.006 4.006 5 C -0.515 4.515 6 H 0.038 0.962 7 C 0.005 3.995 8 N -0.952 5.952 9 Si 0.942 3.058 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.253 1.253 13 C 0.079 3.921 14 N -0.671 5.671 15 C 0.127 3.873 16 H 0.107 0.893 17 C -0.156 4.156 18 C -0.087 4.087 19 S -0.159 6.159 20 C -0.088 4.088 21 C -0.122 4.122 22 C -0.107 4.107 23 C -0.137 4.137 24 C -0.088 4.088 25 C -0.089 4.089 26 H 0.070 0.930 27 H 0.036 0.964 28 H 0.026 0.974 29 H 0.010 0.990 30 H 0.011 0.989 31 H 0.264 0.736 32 H 0.055 0.945 33 H 0.029 0.971 34 H 0.354 0.646 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.106 0.894 38 H 0.128 0.872 39 H 0.132 0.868 40 H 0.148 0.852 41 H 0.138 0.862 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.251 -6.171 -24.583 25.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.085 4.085 3 H 0.074 0.926 4 C -0.044 4.044 5 C -0.553 4.553 6 H 0.056 0.944 7 C -0.192 4.192 8 N -0.593 5.593 9 Si 0.766 3.234 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.177 1.177 13 C -0.050 4.050 14 N -0.301 5.301 15 C 0.018 3.982 16 H 0.125 0.875 17 C -0.196 4.196 18 C -0.236 4.236 19 S 0.082 5.918 20 C -0.200 4.200 21 C -0.145 4.145 22 C -0.127 4.127 23 C -0.157 4.157 24 C -0.108 4.108 25 C -0.095 4.095 26 H 0.089 0.911 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.028 0.972 30 H 0.029 0.971 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.174 0.826 35 H 0.121 0.879 36 H 0.082 0.918 37 H 0.124 0.876 38 H 0.146 0.854 39 H 0.150 0.850 40 H 0.166 0.834 41 H 0.156 0.844 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.306 -7.365 -24.690 25.798 hybrid contribution 0.571 0.676 1.225 1.511 sum 1.877 -6.689 -23.465 24.472 Atomic orbital electron populations 1.21479 0.95023 1.00261 1.00239 1.20847 0.96497 0.98513 0.92672 0.92643 1.19557 0.95476 0.95662 0.93738 1.21429 1.34213 1.08597 0.91059 0.94385 1.25923 0.97027 1.00559 0.95643 1.70061 1.49135 1.41447 0.98673 0.85783 0.79409 0.80325 0.77889 1.19204 1.21047 1.17709 1.21836 0.97011 0.97007 0.89196 1.60519 1.63641 1.05842 1.00126 1.20124 0.91036 0.92747 0.94326 0.87546 1.22386 0.97362 1.02737 0.97096 1.23768 1.05491 0.93109 1.01225 1.85494 1.08142 1.14889 1.83243 1.21492 0.97316 0.96573 1.04661 1.21064 0.93669 0.97788 1.01978 1.21324 0.95403 0.98322 0.97612 1.21428 1.00807 0.93330 1.00144 1.21489 0.92542 1.00069 0.96723 1.19634 0.95931 0.93475 1.00466 0.91080 0.94474 0.95525 0.97204 0.97053 0.92681 0.92663 0.95241 0.82592 0.87931 0.91780 0.87587 0.85412 0.85033 0.83423 0.84412 0.84648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.18 8.89 71.98 0.64 -3.54 16 2 C -0.07 -2.50 2.52 -10.80 -0.03 -2.53 16 3 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 4 C -0.01 -0.30 3.52 29.85 0.10 -0.20 16 5 C -0.51 -29.68 8.96 25.60 0.23 -29.45 16 6 H 0.04 2.40 7.30 -2.91 -0.02 2.38 16 7 C 0.00 0.28 5.47 84.66 0.46 0.75 16 8 N -0.95 -60.31 13.96 21.45 0.30 -60.01 16 9 Si 0.94 45.37 27.47 68.60 1.88 47.25 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 12 H -0.25 -11.58 6.54 99.48 0.65 -10.93 16 13 C 0.08 2.36 4.08 86.30 0.35 2.71 16 14 N -0.67 -15.28 4.57 -498.46 -2.28 -17.56 16 15 C 0.13 2.53 2.65 43.59 0.12 2.64 16 16 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 17 C -0.16 -2.76 4.68 30.40 0.14 -2.62 16 18 C -0.09 -1.33 6.53 72.16 0.47 -0.86 16 19 S -0.16 -3.41 21.99 -56.49 -1.24 -4.65 16 20 C -0.09 -2.12 6.05 22.59 0.14 -1.98 16 21 C -0.12 -2.77 9.65 22.49 0.22 -2.55 16 22 C -0.11 -2.21 10.06 22.18 0.22 -1.99 16 23 C -0.14 -3.03 10.03 22.18 0.22 -2.81 16 24 C -0.09 -2.15 8.50 22.42 0.19 -1.96 16 25 C -0.09 -2.11 4.55 -19.82 -0.09 -2.20 16 26 H 0.07 2.22 7.75 -2.38 -0.02 2.20 16 27 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.03 1.12 6.95 -2.39 -0.02 1.11 16 29 H 0.01 0.47 7.20 -2.39 -0.02 0.45 16 30 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 31 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 32 H 0.05 1.84 6.77 -2.39 -0.02 1.83 16 33 H 0.03 0.88 6.55 -2.38 -0.02 0.87 16 34 H 0.35 7.02 8.87 -89.69 -0.80 6.23 16 35 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.06 1.47 6.35 -2.39 -0.02 1.45 16 37 H 0.11 1.33 8.08 -2.39 -0.02 1.31 16 38 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.13 2.61 8.05 -2.91 -0.02 2.59 16 40 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 41 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 42 H 0.14 3.35 7.27 -2.91 -0.02 3.33 16 Total: -1.00 -67.07 338.73 2.21 -64.86 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.15 Total: 16.68 kcal Atomic # 6 Polarization: -49.96 SS G_CDS: 3.39 Total: -46.57 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -1.98 Total: -77.57 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.88 Total: 47.25 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -1.24 Total: -4.65 kcal Total: -67.07 2.21 -64.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602506517.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.120 kcal (2) G-P(sol) polarization free energy of solvation -67.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.33 seconds