Wall clock time and date at job start Tue Mar 31 2020 06:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47633 * 2 1 4 4 C 1.53007 * 109.47247 * 240.00050 * 2 1 3 5 5 C 1.50692 * 109.46920 * 64.99981 * 4 2 1 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99896 * 180.02562 * 5 4 2 8 8 N 1.31520 * 120.00120 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99995 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47674 * 270.00235 * 9 7 5 11 11 H 1.48504 * 109.47098 * 30.00116 * 9 7 5 12 12 H 1.48504 * 109.47338 * 149.99965 * 9 7 5 13 13 C 1.53000 * 109.47280 * 120.00124 * 2 1 3 14 14 N 1.46902 * 109.47130 * 295.00208 * 13 2 1 15 15 C 1.46896 * 111.00171 * 185.96921 * 14 13 2 16 16 H 1.08994 * 108.60903 * 181.11998 * 15 14 13 17 17 C 1.51871 * 108.65510 * 299.14257 * 15 14 13 18 18 C 1.53530 * 108.97962 * 181.32026 * 17 15 14 19 19 S 1.81616 * 107.27014 * 287.29875 * 18 17 15 20 20 C 1.76467 * 102.60578 * 46.45408 * 19 18 17 21 21 C 1.39628 * 117.71661 * 167.17396 * 20 19 18 22 22 C 1.37740 * 120.62758 * 179.54510 * 21 20 19 23 23 C 1.38341 * 119.50711 * 359.94533 * 22 21 20 24 24 C 1.37767 * 120.01236 * 0.23904 * 23 22 21 25 25 C 1.38182 * 122.29577 * 347.08462 * 20 19 18 26 26 H 1.09000 * 109.46749 * 59.99950 * 1 2 3 27 27 H 1.09001 * 109.47497 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47029 * 299.99920 * 1 2 3 29 29 H 1.09002 * 109.47045 * 305.00252 * 4 2 1 30 30 H 1.08996 * 109.46873 * 185.00179 * 4 2 1 31 31 H 0.96995 * 119.99955 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.47184 * 54.99822 * 13 2 1 33 33 H 1.09003 * 109.47681 * 174.99933 * 13 2 1 34 34 H 1.00897 * 111.00180 * 62.00594 * 14 13 2 35 35 H 1.09006 * 109.55107 * 301.17123 * 17 15 14 36 36 H 1.09007 * 109.54952 * 61.46998 * 17 15 14 37 37 H 1.08999 * 109.89644 * 46.74311 * 18 17 15 38 38 H 1.09004 * 109.89153 * 167.78044 * 18 17 15 39 39 H 1.07993 * 119.68999 * 359.56092 * 21 20 19 40 40 H 1.07999 * 120.24941 * 179.90723 * 22 21 20 41 41 H 1.08004 * 119.99779 * 180.26089 * 23 22 21 42 42 H 1.07995 * 119.46816 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4765 6 1 1.0806 0.9746 -2.3757 7 6 1.9924 -0.4022 -3.7283 8 7 1.6449 0.2773 -4.7994 9 14 2.9627 -1.9888 -3.9028 10 1 4.4162 -1.6854 -3.8792 11 1 2.6289 -2.8995 -2.7783 12 1 2.6145 -2.6431 -5.1897 13 6 2.0400 -0.7213 1.2492 14 7 1.6513 0.0374 2.4456 15 6 2.2437 -0.5480 3.6557 16 1 1.9152 0.0308 4.5188 17 6 1.7371 -1.9720 3.8046 18 6 2.3260 -2.5801 5.0854 19 16 4.0844 -2.9058 4.7687 20 6 4.6237 -1.4055 4.0121 21 6 5.9989 -1.2022 3.8808 22 6 6.4857 -0.0567 3.2909 23 6 5.6005 0.8986 2.8244 24 6 4.2431 0.7029 2.9559 25 6 3.7374 -0.4490 3.5550 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6053 -1.7198 -1.2952 30 1 3.1263 -0.7995 -1.2056 31 1 1.8921 -0.0456 -5.6800 32 1 1.6053 -1.7198 1.2951 33 1 3.1263 -0.7995 1.2056 34 1 0.6473 0.0958 2.5264 35 1 0.6490 -1.9671 3.8697 36 1 2.0499 -2.5623 2.9432 37 1 2.2218 -1.8770 5.9118 38 1 1.8121 -3.5114 5.3241 39 1 6.6874 -1.9504 4.2449 40 1 7.5506 0.0949 3.1938 41 1 5.9734 1.7978 2.3568 42 1 3.5600 1.4546 2.5890 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602506519.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:06 Heat of formation + Delta-G solvation = 13.048084 kcal Electronic energy + Delta-G solvation = -21253.115941 eV Core-core repulsion = 18323.278659 eV Total energy + Delta-G solvation = -2929.837282 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -39.89247 -37.45888 -35.35565 -32.74624 -31.66231 -30.78525 -30.58060 -27.62135 -26.36323 -24.58034 -23.29561 -22.63096 -22.19505 -20.17594 -19.08695 -17.68162 -16.89747 -16.14654 -15.93545 -15.71006 -14.99970 -14.58601 -14.12322 -14.07122 -13.75265 -13.40337 -13.35064 -13.13094 -12.81253 -12.65911 -12.61240 -12.21984 -11.90192 -11.73127 -11.53496 -11.27946 -11.00990 -10.77917 -10.65701 -10.40438 -10.25446 -9.90080 -9.71224 -9.66114 -9.45984 -9.05687 -8.72231 -8.50315 -8.32258 -7.49615 -6.01046 -3.97772 1.17053 1.36931 1.45857 2.23492 3.32794 3.40146 3.44271 3.67812 4.15010 4.44672 4.46945 4.48228 4.67585 4.93169 5.00555 5.05382 5.24743 5.30729 5.32805 5.36658 5.45741 5.56593 5.60902 5.70596 5.78102 5.91907 5.95131 6.01440 6.16864 6.25617 6.33586 6.45772 6.46468 6.58033 6.75884 6.93400 6.97258 7.05270 7.15374 7.31710 7.43777 7.54694 7.83986 8.58288 9.04579 9.62284 11.12375 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016914 B = 0.004471 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.021748 B = 6261.621184 C = 6653.730695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.072 4.072 3 H 0.070 0.930 4 C -0.008 4.008 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.066 3.934 8 N -0.905 5.905 9 Si 0.876 3.124 10 H -0.278 1.278 11 H -0.267 1.267 12 H -0.289 1.289 13 C 0.057 3.943 14 N -0.676 5.676 15 C 0.124 3.876 16 H 0.089 0.911 17 C -0.159 4.159 18 C -0.098 4.098 19 S -0.135 6.135 20 C -0.074 4.074 21 C -0.110 4.110 22 C -0.105 4.105 23 C -0.127 4.127 24 C -0.075 4.075 25 C -0.077 4.077 26 H 0.067 0.933 27 H 0.039 0.961 28 H 0.034 0.966 29 H 0.013 0.987 30 H 0.009 0.991 31 H 0.262 0.738 32 H 0.027 0.973 33 H 0.070 0.930 34 H 0.344 0.656 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.858 -3.332 22.149 22.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.091 4.091 3 H 0.088 0.912 4 C -0.046 4.046 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.135 4.135 8 N -0.545 5.545 9 Si 0.704 3.296 10 H -0.203 1.203 11 H -0.191 1.191 12 H -0.215 1.215 13 C -0.071 4.071 14 N -0.307 5.307 15 C 0.014 3.986 16 H 0.106 0.894 17 C -0.200 4.200 18 C -0.247 4.247 19 S 0.106 5.894 20 C -0.187 4.187 21 C -0.132 4.132 22 C -0.125 4.125 23 C -0.147 4.147 24 C -0.094 4.094 25 C -0.084 4.084 26 H 0.086 0.914 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.031 0.969 30 H 0.028 0.972 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.164 0.836 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.874 -3.936 22.183 23.050 hybrid contribution -0.640 -0.596 -0.528 1.021 sum 4.234 -4.532 21.655 22.526 Atomic orbital electron populations 1.21739 0.96236 1.00417 1.00821 1.20998 0.95162 1.00046 0.92900 0.91156 1.19594 0.95562 0.95997 0.93456 1.21118 1.35335 1.09437 0.89066 0.90833 1.25014 0.95663 0.96832 0.95974 1.69913 1.47273 1.39272 0.98003 0.86838 0.80752 0.84611 0.77433 1.20349 1.19130 1.21478 1.22250 1.00739 0.94563 0.89561 1.60717 1.15354 1.53403 1.01189 1.20080 0.90744 0.93018 0.94765 0.89352 1.22459 1.01558 0.98525 0.97426 1.23683 0.94506 1.05423 1.01057 1.85444 1.09992 1.19110 1.74809 1.21290 0.96188 0.97184 1.03991 1.20787 0.92828 0.98281 1.01353 1.21032 0.99723 0.93726 0.97984 1.21183 0.93552 0.99665 1.00286 1.21410 0.95339 0.96975 0.95722 1.19431 0.93850 0.94923 1.00174 0.91407 0.94180 0.94659 0.96913 0.97225 0.92845 0.95518 0.91172 0.83607 0.89910 0.89604 0.89110 0.87274 0.85942 0.85718 0.85739 0.84169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.77 37.15 0.33 -2.07 16 2 C -0.07 -1.39 2.55 -90.62 -0.23 -1.62 16 3 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 4 C -0.01 -0.20 3.52 -27.88 -0.10 -0.29 16 5 C -0.51 -14.44 8.96 -34.44 -0.31 -14.74 16 6 H 0.07 2.22 7.30 -52.49 -0.38 1.84 16 7 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 8 N -0.91 -28.03 13.96 55.43 0.77 -27.25 16 9 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 C 0.06 0.92 4.19 -3.82 -0.02 0.90 16 14 N -0.68 -8.66 5.14 -108.91 -0.56 -9.22 16 15 C 0.12 1.41 2.65 -69.76 -0.19 1.23 16 16 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 17 C -0.16 -1.63 4.79 -27.03 -0.13 -1.76 16 18 C -0.10 -0.88 6.53 37.43 0.24 -0.64 16 19 S -0.14 -1.57 21.99 -107.50 -2.36 -3.93 16 20 C -0.07 -0.96 6.05 -39.08 -0.24 -1.19 16 21 C -0.11 -1.34 9.65 -39.24 -0.38 -1.72 16 22 C -0.10 -1.21 10.06 -39.73 -0.40 -1.61 16 23 C -0.13 -1.55 10.03 -39.72 -0.40 -1.95 16 24 C -0.07 -0.99 8.19 -39.34 -0.32 -1.31 16 25 C -0.08 -1.01 4.49 -104.56 -0.47 -1.48 16 26 H 0.07 1.38 6.95 -51.93 -0.36 1.02 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.03 0.51 6.82 -51.93 -0.35 0.16 16 29 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 30 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.03 0.43 6.62 -51.93 -0.34 0.08 16 33 H 0.07 1.23 6.40 -51.93 -0.33 0.90 16 34 H 0.34 4.00 7.26 -39.29 -0.29 3.71 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 1.07 6.42 -51.93 -0.33 0.73 16 37 H 0.09 0.73 8.08 -51.93 -0.42 0.31 16 38 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.12 1.31 8.05 -52.49 -0.42 0.89 16 40 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 41 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 42 H 0.14 1.90 7.27 -52.49 -0.38 1.52 16 LS Contribution 336.28 15.07 5.07 5.07 Total: -1.00 -30.58 336.28 -10.96 -41.54 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -6.51 Total: 2.78 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -2.70 Total: -26.43 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.21 Total: -36.47 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.36 Total: -3.93 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.58 -10.96 -41.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602506519.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.591 kcal (2) G-P(sol) polarization free energy of solvation -30.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds