Wall clock time and date at job start Tue Mar 31 2020 06:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47633 * 2 1 4 4 C 1.53007 * 109.47247 * 240.00050 * 2 1 3 5 5 C 1.50692 * 109.46920 * 64.99981 * 4 2 1 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99896 * 180.02562 * 5 4 2 8 8 N 1.31520 * 120.00120 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99995 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47674 * 270.00235 * 9 7 5 11 11 H 1.48504 * 109.47098 * 30.00116 * 9 7 5 12 12 H 1.48504 * 109.47338 * 149.99965 * 9 7 5 13 13 C 1.53000 * 109.47280 * 120.00124 * 2 1 3 14 14 N 1.46902 * 109.47130 * 295.00208 * 13 2 1 15 15 C 1.46896 * 111.00171 * 185.96921 * 14 13 2 16 16 H 1.08994 * 108.60903 * 181.11998 * 15 14 13 17 17 C 1.51871 * 108.65510 * 299.14257 * 15 14 13 18 18 C 1.53530 * 108.97962 * 181.32026 * 17 15 14 19 19 S 1.81616 * 107.27014 * 287.29875 * 18 17 15 20 20 C 1.76467 * 102.60578 * 46.45408 * 19 18 17 21 21 C 1.39628 * 117.71661 * 167.17396 * 20 19 18 22 22 C 1.37740 * 120.62758 * 179.54510 * 21 20 19 23 23 C 1.38341 * 119.50711 * 359.94533 * 22 21 20 24 24 C 1.37767 * 120.01236 * 0.23904 * 23 22 21 25 25 C 1.38182 * 122.29577 * 347.08462 * 20 19 18 26 26 H 1.09000 * 109.46749 * 59.99950 * 1 2 3 27 27 H 1.09001 * 109.47497 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47029 * 299.99920 * 1 2 3 29 29 H 1.09002 * 109.47045 * 305.00252 * 4 2 1 30 30 H 1.08996 * 109.46873 * 185.00179 * 4 2 1 31 31 H 0.96995 * 119.99955 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.47184 * 54.99822 * 13 2 1 33 33 H 1.09003 * 109.47681 * 174.99933 * 13 2 1 34 34 H 1.00897 * 111.00180 * 62.00594 * 14 13 2 35 35 H 1.09006 * 109.55107 * 301.17123 * 17 15 14 36 36 H 1.09007 * 109.54952 * 61.46998 * 17 15 14 37 37 H 1.08999 * 109.89644 * 46.74311 * 18 17 15 38 38 H 1.09004 * 109.89153 * 167.78044 * 18 17 15 39 39 H 1.07993 * 119.68999 * 359.56092 * 21 20 19 40 40 H 1.07999 * 120.24941 * 179.90723 * 22 21 20 41 41 H 1.08004 * 119.99779 * 180.26089 * 23 22 21 42 42 H 1.07995 * 119.46816 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4765 6 1 1.0806 0.9746 -2.3757 7 6 1.9924 -0.4022 -3.7283 8 7 1.6449 0.2773 -4.7994 9 14 2.9627 -1.9888 -3.9028 10 1 4.4162 -1.6854 -3.8792 11 1 2.6289 -2.8995 -2.7783 12 1 2.6145 -2.6431 -5.1897 13 6 2.0400 -0.7213 1.2492 14 7 1.6513 0.0374 2.4456 15 6 2.2437 -0.5480 3.6557 16 1 1.9152 0.0308 4.5188 17 6 1.7371 -1.9720 3.8046 18 6 2.3260 -2.5801 5.0854 19 16 4.0844 -2.9058 4.7687 20 6 4.6237 -1.4055 4.0121 21 6 5.9989 -1.2022 3.8808 22 6 6.4857 -0.0567 3.2909 23 6 5.6005 0.8986 2.8244 24 6 4.2431 0.7029 2.9559 25 6 3.7374 -0.4490 3.5550 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6053 -1.7198 -1.2952 30 1 3.1263 -0.7995 -1.2056 31 1 1.8921 -0.0456 -5.6800 32 1 1.6053 -1.7198 1.2951 33 1 3.1263 -0.7995 1.2056 34 1 0.6473 0.0958 2.5264 35 1 0.6490 -1.9671 3.8697 36 1 2.0499 -2.5623 2.9432 37 1 2.2218 -1.8770 5.9118 38 1 1.8121 -3.5114 5.3241 39 1 6.6874 -1.9504 4.2449 40 1 7.5506 0.0949 3.1938 41 1 5.9734 1.7978 2.3568 42 1 3.5600 1.4546 2.5890 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602506519.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:05 Heat of formation + Delta-G solvation = -3.879874 kcal Electronic energy + Delta-G solvation = -21253.849993 eV Core-core repulsion = 18323.278659 eV Total energy + Delta-G solvation = -2930.571334 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.83795 -38.56573 -36.75921 -34.56856 -33.00171 -31.68440 -31.60145 -29.44071 -27.58968 -25.82191 -24.21486 -23.83659 -23.54472 -21.25912 -20.58827 -19.04620 -18.47803 -17.30562 -16.90083 -16.62561 -16.38274 -15.91925 -15.56383 -15.25377 -14.85679 -14.77556 -14.35232 -14.27520 -14.09416 -13.86482 -13.71745 -13.52558 -13.44452 -13.05833 -12.82817 -12.49167 -12.41648 -12.19805 -12.09997 -11.76275 -11.64100 -11.43733 -11.18237 -11.09988 -11.06108 -10.74660 -10.59979 -9.66492 -9.36228 -8.37287 -8.27331 -6.28822 0.25370 0.43297 0.63089 1.33282 1.34193 1.42060 1.45800 2.35470 2.74740 3.07977 3.15082 3.58886 3.70148 3.87317 4.05562 4.15222 4.19714 4.23888 4.26168 4.41701 4.48014 4.52774 4.55115 4.68170 4.72848 4.77079 4.84637 4.89557 5.00528 5.05284 5.09134 5.12310 5.30428 5.33312 5.38195 5.49968 5.56751 5.64262 5.70854 5.73260 6.00705 6.04404 6.33835 6.50913 6.78535 7.34706 8.89362 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016914 B = 0.004471 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.021748 B = 6261.621184 C = 6653.730695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.067 4.067 3 H 0.053 0.947 4 C -0.006 4.006 5 C -0.515 4.515 6 H 0.038 0.962 7 C 0.005 3.995 8 N -0.952 5.952 9 Si 0.941 3.059 10 H -0.271 1.271 11 H -0.251 1.251 12 H -0.283 1.283 13 C 0.078 3.922 14 N -0.675 5.675 15 C 0.127 3.873 16 H 0.107 0.893 17 C -0.155 4.155 18 C -0.088 4.088 19 S -0.157 6.157 20 C -0.087 4.087 21 C -0.121 4.121 22 C -0.107 4.107 23 C -0.138 4.138 24 C -0.092 4.092 25 C -0.089 4.089 26 H 0.033 0.967 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.014 0.986 30 H 0.006 0.994 31 H 0.264 0.736 32 H 0.032 0.968 33 H 0.053 0.947 34 H 0.355 0.645 35 H 0.105 0.895 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.149 0.851 41 H 0.136 0.864 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.948 -4.875 24.360 25.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.086 4.086 3 H 0.071 0.929 4 C -0.044 4.044 5 C -0.553 4.553 6 H 0.056 0.944 7 C -0.191 4.191 8 N -0.593 5.593 9 Si 0.765 3.235 10 H -0.196 1.196 11 H -0.174 1.174 12 H -0.209 1.209 13 C -0.051 4.051 14 N -0.306 5.306 15 C 0.017 3.983 16 H 0.124 0.876 17 C -0.195 4.195 18 C -0.236 4.236 19 S 0.085 5.915 20 C -0.200 4.200 21 C -0.144 4.144 22 C -0.126 4.126 23 C -0.158 4.158 24 C -0.112 4.112 25 C -0.095 4.095 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.033 0.967 30 H 0.024 0.976 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.176 0.824 35 H 0.123 0.877 36 H 0.082 0.918 37 H 0.124 0.876 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.166 0.834 41 H 0.154 0.846 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.955 -5.477 24.421 25.514 hybrid contribution -0.692 -0.024 -1.183 1.371 sum 4.264 -5.501 23.238 24.258 Atomic orbital electron populations 1.21646 0.94969 1.00927 1.00912 1.20848 0.96176 0.98849 0.92722 0.92873 1.19544 0.95324 0.95779 0.93710 1.21422 1.34248 1.08566 0.91039 0.94400 1.25918 0.96967 1.00588 0.95641 1.70059 1.49117 1.41450 0.98676 0.85791 0.79279 0.80391 0.77993 1.19602 1.17447 1.20899 1.21828 0.99461 0.94474 0.89305 1.60566 1.16160 1.53134 1.00752 1.20150 0.89771 0.94144 0.94245 0.87556 1.22389 1.02843 0.97116 0.97144 1.23777 0.92204 1.06794 1.00857 1.85481 1.12601 1.18741 1.74666 1.21494 0.96629 0.97636 1.04249 1.21077 0.93067 0.98837 1.01383 1.21327 1.00920 0.93195 0.97191 1.21427 0.93510 1.00447 1.00407 1.21472 0.95802 0.97280 0.96609 1.19632 0.94847 0.94788 1.00266 0.94816 0.93378 0.91063 0.96736 0.97559 0.92672 0.94995 0.92867 0.82424 0.87674 0.91776 0.87585 0.85223 0.84839 0.83364 0.84584 0.85023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.40 8.77 71.98 0.63 -3.77 16 2 C -0.07 -2.55 2.55 -10.79 -0.03 -2.58 16 3 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 4 C -0.01 -0.27 3.52 29.85 0.10 -0.16 16 5 C -0.51 -29.77 8.96 25.60 0.23 -29.54 16 6 H 0.04 2.40 7.30 -2.91 -0.02 2.38 16 7 C 0.01 0.31 5.47 84.65 0.46 0.77 16 8 N -0.95 -60.41 13.96 21.45 0.30 -60.11 16 9 Si 0.94 45.52 27.47 68.60 1.88 47.40 16 10 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.25 -11.38 6.54 99.48 0.65 -10.73 16 12 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 13 C 0.08 2.39 4.19 86.30 0.36 2.75 16 14 N -0.67 -15.84 5.14 -498.49 -2.56 -18.41 16 15 C 0.13 2.57 2.65 43.59 0.12 2.68 16 16 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 17 C -0.15 -2.68 4.79 30.40 0.15 -2.54 16 18 C -0.09 -1.30 6.53 72.16 0.47 -0.83 16 19 S -0.16 -3.33 21.99 -56.49 -1.24 -4.58 16 20 C -0.09 -2.15 6.05 22.59 0.14 -2.01 16 21 C -0.12 -2.81 9.65 22.49 0.22 -2.60 16 22 C -0.11 -2.32 10.06 22.18 0.22 -2.10 16 23 C -0.14 -3.28 10.03 22.18 0.22 -3.06 16 24 C -0.09 -2.38 8.19 22.42 0.18 -2.20 16 25 C -0.09 -2.19 4.49 -19.82 -0.09 -2.28 16 26 H 0.03 1.38 6.95 -2.39 -0.02 1.36 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.07 1.93 6.82 -2.39 -0.02 1.91 16 29 H 0.01 0.68 7.20 -2.39 -0.02 0.66 16 30 H 0.01 0.29 7.57 -2.39 -0.02 0.28 16 31 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 32 H 0.03 0.95 6.62 -2.39 -0.02 0.93 16 33 H 0.05 1.83 6.40 -2.39 -0.02 1.81 16 34 H 0.35 7.11 7.26 -89.70 -0.65 6.46 16 35 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.06 1.43 6.42 -2.38 -0.02 1.42 16 37 H 0.11 1.30 8.08 -2.39 -0.02 1.28 16 38 H 0.13 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.13 2.70 8.05 -2.91 -0.02 2.67 16 40 H 0.15 2.40 8.06 -2.91 -0.02 2.37 16 41 H 0.14 2.78 8.06 -2.91 -0.02 2.75 16 42 H 0.13 3.56 7.27 -2.91 -0.02 3.54 16 Total: -1.00 -67.56 336.28 2.07 -65.49 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.30 Total: 17.66 kcal Atomic # 6 Polarization: -50.85 SS G_CDS: 3.39 Total: -47.46 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -2.26 Total: -78.52 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.40 kcal Atomic # 16 Polarization: -3.33 SS G_CDS: -1.24 Total: -4.58 kcal Total: -67.56 2.07 -65.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602506519.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.612 kcal (2) G-P(sol) polarization free energy of solvation -67.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds