Wall clock time and date at job start Tue Mar 31 2020 06:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47382 * 2 1 4 4 C 1.52996 * 109.46790 * 239.99491 * 2 1 3 5 5 C 1.50701 * 109.46982 * 65.00677 * 4 2 1 6 6 H 1.08002 * 120.00306 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00102 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99768 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00192 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46659 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47345 * 119.99477 * 9 7 5 12 12 H 1.48504 * 109.46495 * 239.99843 * 9 7 5 13 13 C 1.53001 * 109.46773 * 120.00320 * 2 1 3 14 14 N 1.46904 * 109.46821 * 294.99580 * 13 2 1 15 15 C 1.46899 * 111.00035 * 174.52738 * 14 13 2 16 16 H 1.08993 * 108.61353 * 176.39364 * 15 14 13 17 17 C 1.51870 * 108.66102 * 58.35222 * 15 14 13 18 18 C 1.53542 * 108.96793 * 178.49752 * 17 15 14 19 19 S 1.81614 * 107.16927 * 72.86485 * 18 17 15 20 20 C 1.76470 * 102.60922 * 313.52244 * 19 18 17 21 21 C 1.39621 * 117.71709 * 192.76319 * 20 19 18 22 22 C 1.37742 * 120.62763 * 180.72188 * 21 20 19 23 23 C 1.38349 * 119.50508 * 359.97438 * 22 21 20 24 24 C 1.37757 * 120.01032 * 359.73561 * 23 22 21 25 25 C 1.38177 * 122.29716 * 12.98504 * 20 19 18 26 26 H 1.09005 * 109.47113 * 59.99721 * 1 2 3 27 27 H 1.08995 * 109.47382 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47386 * 300.00112 * 1 2 3 29 29 H 1.09000 * 109.46858 * 185.00043 * 4 2 1 30 30 H 1.08993 * 109.47992 * 305.00213 * 4 2 1 31 31 H 0.97008 * 119.99937 * 180.02562 * 8 7 5 32 32 H 1.08991 * 109.47554 * 54.99494 * 13 2 1 33 33 H 1.09000 * 109.46768 * 175.00204 * 13 2 1 34 34 H 1.00898 * 111.00293 * 298.47826 * 14 13 2 35 35 H 1.09003 * 109.55256 * 298.46922 * 17 15 14 36 36 H 1.08998 * 109.55006 * 58.77157 * 17 15 14 37 37 H 1.08995 * 109.97565 * 313.43446 * 18 17 15 38 38 H 1.09003 * 109.97831 * 192.29138 * 18 17 15 39 39 H 1.08000 * 119.69335 * 0.70054 * 21 20 19 40 40 H 1.07994 * 120.24881 * 179.97438 * 22 21 20 41 41 H 1.08006 * 119.99111 * 179.73471 * 23 22 21 42 42 H 1.08008 * 119.46591 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.6413 0.0570 -2.4765 6 1 1.0800 0.9742 -2.3757 7 6 1.9932 -0.4019 -3.7282 8 7 2.6771 -1.5185 -3.8510 9 14 1.4997 0.5633 -5.2496 10 1 0.7423 1.7743 -4.8434 11 1 2.7181 0.9681 -5.9959 12 1 0.6459 -0.2857 -6.1189 13 6 2.0399 -0.7213 1.2492 14 7 1.6513 0.0374 2.4456 15 6 2.0105 -0.6902 3.6702 16 1 1.7647 -0.0670 4.5299 17 6 3.5083 -0.9415 3.6645 18 6 3.8972 -1.6688 4.9596 19 16 3.2966 -3.3767 4.8165 20 6 1.6480 -3.1571 4.2264 21 6 0.7940 -4.2612 4.2594 22 6 -0.5007 -4.1610 3.7999 23 6 -0.9554 -2.9529 3.3021 24 6 -0.1171 -1.8601 3.2737 25 6 1.1934 -1.9468 3.7389 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 3.1262 -0.7996 -1.2055 30 1 1.6053 -1.7198 -1.2951 31 1 2.9250 -1.8411 -4.7316 32 1 1.6053 -1.7198 1.2952 33 1 3.1262 -0.7995 1.2056 34 1 2.0624 0.9588 2.4389 35 1 3.7715 -1.5576 2.8047 36 1 4.0375 0.0098 3.6092 37 1 3.4296 -1.1815 5.8151 38 1 4.9808 -1.6653 5.0776 39 1 1.1519 -5.2029 4.6487 40 1 -1.1559 -5.0190 3.8279 41 1 -1.9677 -2.8666 2.9358 42 1 -0.4814 -0.9211 2.8836 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602506520.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:17 Heat of formation + Delta-G solvation = 9.367474 kcal Electronic energy + Delta-G solvation = -21224.722363 eV Core-core repulsion = 18294.725477 eV Total energy + Delta-G solvation = -2929.996885 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.81764 -37.34122 -35.20833 -32.74757 -31.52594 -30.73372 -30.54578 -27.04481 -26.15156 -24.48643 -23.21797 -22.57557 -22.51517 -20.11674 -19.24684 -17.55120 -16.39056 -15.97975 -15.87995 -15.62634 -14.75499 -14.58436 -14.32572 -14.19578 -13.72379 -13.37716 -13.20566 -12.94777 -12.64183 -12.56249 -12.42219 -12.18043 -11.54676 -11.44132 -11.34975 -11.18521 -10.87822 -10.80855 -10.60780 -10.29188 -10.25417 -10.18089 -9.71649 -9.64241 -9.14296 -8.94314 -8.66723 -8.32259 -8.22107 -7.43272 -5.96576 -3.97798 1.22567 1.42498 1.52016 2.30050 3.32281 3.39917 3.43742 3.73007 4.22329 4.49026 4.51841 4.54014 4.75565 4.98443 5.06200 5.11114 5.30180 5.36946 5.39239 5.42043 5.52544 5.63878 5.68058 5.83709 5.87447 6.02320 6.06602 6.16441 6.30667 6.40493 6.49841 6.56006 6.61146 6.68360 6.98007 6.99258 7.16357 7.18660 7.30103 7.56138 7.70989 7.86729 8.03812 8.47436 9.08957 9.65647 11.14964 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020249 B = 0.003926 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.418516 B = 7130.732160 C = 7502.487947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.080 4.080 3 H 0.052 0.948 4 C 0.028 3.972 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.060 3.940 14 N -0.676 5.676 15 C 0.125 3.875 16 H 0.087 0.913 17 C -0.160 4.160 18 C -0.097 4.097 19 S -0.135 6.135 20 C -0.073 4.073 21 C -0.110 4.110 22 C -0.105 4.105 23 C -0.129 4.129 24 C -0.073 4.073 25 C -0.076 4.076 26 H 0.053 0.947 27 H 0.039 0.961 28 H 0.041 0.959 29 H 0.011 0.989 30 H 0.015 0.985 31 H 0.259 0.741 32 H 0.069 0.931 33 H 0.027 0.973 34 H 0.342 0.658 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.878 -1.317 20.113 20.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.099 4.099 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.069 4.069 14 N -0.305 5.305 15 C 0.014 3.986 16 H 0.105 0.895 17 C -0.200 4.200 18 C -0.246 4.246 19 S 0.107 5.893 20 C -0.185 4.185 21 C -0.133 4.133 22 C -0.125 4.125 23 C -0.149 4.149 24 C -0.093 4.093 25 C -0.083 4.083 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.161 0.839 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.127 0.873 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.737 -2.613 20.264 20.506 hybrid contribution 0.167 1.568 -1.300 2.044 sum -1.570 -1.045 18.964 19.057 Atomic orbital electron populations 1.21592 0.95820 1.00471 1.00041 1.21165 0.95924 0.98809 0.93953 0.92904 1.19110 0.95845 0.95570 0.90471 1.21267 1.34486 1.08252 0.90968 0.92543 1.25024 0.95355 0.95079 0.99088 1.69984 1.39113 1.21282 1.23243 0.86592 0.78245 0.80151 0.83360 1.19746 1.21125 1.21082 1.22232 0.97409 0.98000 0.89210 1.60711 1.63354 1.05548 1.00873 1.20065 0.90707 0.92936 0.94845 0.89498 1.22465 0.97984 1.02193 0.97387 1.23689 1.04628 0.95042 1.01288 1.85445 1.09493 1.11918 1.82483 1.21295 0.96752 0.96250 1.04249 1.20782 0.93500 0.97160 1.01829 1.21017 0.95199 0.97872 0.98415 1.21158 1.00178 0.93208 1.00336 1.21404 0.92270 0.99676 0.95973 1.19436 0.95715 0.92918 1.00191 0.92828 0.94206 0.94017 0.97041 0.96640 0.93166 0.91234 0.95433 0.83948 0.89388 0.89953 0.89183 0.87283 0.85959 0.85785 0.85893 0.84195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.31 8.89 37.16 0.33 -1.98 16 2 C -0.08 -1.59 2.52 -90.62 -0.23 -1.82 16 3 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.33 8.41 -34.44 -0.29 -14.62 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 9 Si 0.89 21.76 29.54 -169.99 -5.02 16.73 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.06 1.01 4.10 -3.82 -0.02 0.99 16 14 N -0.68 -8.91 4.59 -108.91 -0.50 -9.41 16 15 C 0.12 1.47 2.66 -69.76 -0.19 1.29 16 16 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 17 C -0.16 -1.75 4.72 -27.02 -0.13 -1.88 16 18 C -0.10 -0.94 6.53 37.44 0.24 -0.70 16 19 S -0.14 -1.64 21.98 -107.50 -2.36 -4.01 16 20 C -0.07 -0.98 6.05 -39.09 -0.24 -1.21 16 21 C -0.11 -1.38 9.65 -39.25 -0.38 -1.76 16 22 C -0.11 -1.24 10.06 -39.72 -0.40 -1.63 16 23 C -0.13 -1.59 10.03 -39.72 -0.40 -1.99 16 24 C -0.07 -0.99 8.36 -39.35 -0.33 -1.32 16 25 C -0.08 -1.02 4.53 -104.55 -0.47 -1.50 16 26 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.04 0.68 7.75 -51.93 -0.40 0.28 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.07 1.30 6.61 -51.93 -0.34 0.95 16 33 H 0.03 0.48 6.56 -51.93 -0.34 0.14 16 34 H 0.34 4.09 8.86 -39.29 -0.35 3.74 16 35 H 0.09 1.19 6.37 -51.93 -0.33 0.86 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.77 8.07 -51.93 -0.42 0.35 16 38 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.12 1.36 8.05 -52.49 -0.42 0.93 16 40 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 42 H 0.14 1.91 7.26 -52.48 -0.38 1.53 16 LS Contribution 342.10 15.07 5.16 5.16 Total: -1.00 -30.30 342.10 -11.36 -41.66 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.66 Total: 2.37 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: -2.71 Total: -26.06 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.24 Total: -35.86 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.36 Total: -4.01 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.30 -11.36 -41.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602506520.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.025 kcal (2) G-P(sol) polarization free energy of solvation -30.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds