Wall clock time and date at job start Tue Mar 31 2020 06:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47382 * 2 1 4 4 C 1.52996 * 109.46790 * 239.99491 * 2 1 3 5 5 C 1.50701 * 109.46982 * 65.00677 * 4 2 1 6 6 H 1.08002 * 120.00306 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00102 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99768 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00192 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46659 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47345 * 119.99477 * 9 7 5 12 12 H 1.48504 * 109.46495 * 239.99843 * 9 7 5 13 13 C 1.53001 * 109.46773 * 120.00320 * 2 1 3 14 14 N 1.46904 * 109.46821 * 294.99580 * 13 2 1 15 15 C 1.46899 * 111.00035 * 174.52738 * 14 13 2 16 16 H 1.08993 * 108.61353 * 176.39364 * 15 14 13 17 17 C 1.51870 * 108.66102 * 58.35222 * 15 14 13 18 18 C 1.53542 * 108.96793 * 178.49752 * 17 15 14 19 19 S 1.81614 * 107.16927 * 72.86485 * 18 17 15 20 20 C 1.76470 * 102.60922 * 313.52244 * 19 18 17 21 21 C 1.39621 * 117.71709 * 192.76319 * 20 19 18 22 22 C 1.37742 * 120.62763 * 180.72188 * 21 20 19 23 23 C 1.38349 * 119.50508 * 359.97438 * 22 21 20 24 24 C 1.37757 * 120.01032 * 359.73561 * 23 22 21 25 25 C 1.38177 * 122.29716 * 12.98504 * 20 19 18 26 26 H 1.09005 * 109.47113 * 59.99721 * 1 2 3 27 27 H 1.08995 * 109.47382 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47386 * 300.00112 * 1 2 3 29 29 H 1.09000 * 109.46858 * 185.00043 * 4 2 1 30 30 H 1.08993 * 109.47992 * 305.00213 * 4 2 1 31 31 H 0.97008 * 119.99937 * 180.02562 * 8 7 5 32 32 H 1.08991 * 109.47554 * 54.99494 * 13 2 1 33 33 H 1.09000 * 109.46768 * 175.00204 * 13 2 1 34 34 H 1.00898 * 111.00293 * 298.47826 * 14 13 2 35 35 H 1.09003 * 109.55256 * 298.46922 * 17 15 14 36 36 H 1.08998 * 109.55006 * 58.77157 * 17 15 14 37 37 H 1.08995 * 109.97565 * 313.43446 * 18 17 15 38 38 H 1.09003 * 109.97831 * 192.29138 * 18 17 15 39 39 H 1.08000 * 119.69335 * 0.70054 * 21 20 19 40 40 H 1.07994 * 120.24881 * 179.97438 * 22 21 20 41 41 H 1.08006 * 119.99111 * 179.73471 * 23 22 21 42 42 H 1.08008 * 119.46591 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.6413 0.0570 -2.4765 6 1 1.0800 0.9742 -2.3757 7 6 1.9932 -0.4019 -3.7282 8 7 2.6771 -1.5185 -3.8510 9 14 1.4997 0.5633 -5.2496 10 1 0.7423 1.7743 -4.8434 11 1 2.7181 0.9681 -5.9959 12 1 0.6459 -0.2857 -6.1189 13 6 2.0399 -0.7213 1.2492 14 7 1.6513 0.0374 2.4456 15 6 2.0105 -0.6902 3.6702 16 1 1.7647 -0.0670 4.5299 17 6 3.5083 -0.9415 3.6645 18 6 3.8972 -1.6688 4.9596 19 16 3.2966 -3.3767 4.8165 20 6 1.6480 -3.1571 4.2264 21 6 0.7940 -4.2612 4.2594 22 6 -0.5007 -4.1610 3.7999 23 6 -0.9554 -2.9529 3.3021 24 6 -0.1171 -1.8601 3.2737 25 6 1.1934 -1.9468 3.7389 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 3.1262 -0.7996 -1.2055 30 1 1.6053 -1.7198 -1.2951 31 1 2.9250 -1.8411 -4.7316 32 1 1.6053 -1.7198 1.2952 33 1 3.1262 -0.7995 1.2056 34 1 2.0624 0.9588 2.4389 35 1 3.7715 -1.5576 2.8047 36 1 4.0375 0.0098 3.6092 37 1 3.4296 -1.1815 5.8151 38 1 4.9808 -1.6653 5.0776 39 1 1.1519 -5.2029 4.6487 40 1 -1.1559 -5.0190 3.8279 41 1 -1.9677 -2.8666 2.9358 42 1 -0.4814 -0.9211 2.8836 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602506520.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:12 Heat of formation + Delta-G solvation = -6.523530 kcal Electronic energy + Delta-G solvation = -21225.411448 eV Core-core repulsion = 18294.725477 eV Total energy + Delta-G solvation = -2930.685971 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 3.98 seconds Orbital eigenvalues (eV) -40.81068 -38.48973 -36.72705 -34.55867 -32.88899 -31.67228 -31.58502 -28.94865 -27.48335 -25.87193 -24.39183 -23.98725 -23.53399 -21.20046 -20.82550 -18.61171 -18.37234 -17.10570 -16.88885 -16.64293 -16.46049 -15.91080 -15.55253 -15.44498 -14.83596 -14.46139 -14.33925 -14.20475 -14.09717 -13.69588 -13.61616 -13.48185 -13.25341 -12.94850 -12.77527 -12.55334 -12.37238 -12.21474 -12.14732 -11.98932 -11.60755 -11.46179 -11.12354 -11.05496 -10.90611 -10.58369 -10.54564 -9.64832 -9.35722 -8.37329 -8.17521 -6.26945 0.27166 0.45593 0.63039 1.39639 1.40177 1.42168 1.53212 2.41805 2.76732 3.15938 3.16679 3.60694 3.69645 3.87729 4.06829 4.13775 4.20756 4.22653 4.36451 4.48730 4.51618 4.52023 4.57435 4.68688 4.76462 4.87046 4.91303 4.92980 5.05159 5.10397 5.12673 5.29351 5.36104 5.47862 5.50844 5.54239 5.56808 5.65423 5.81922 5.89321 5.99225 6.05117 6.30469 6.51423 6.89859 7.41757 8.94914 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020249 B = 0.003926 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.418516 B = 7130.732160 C = 7502.487947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.071 4.071 3 H 0.058 0.942 4 C 0.033 3.967 5 C -0.525 4.525 6 H 0.063 0.937 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.961 3.039 10 H -0.259 1.259 11 H -0.280 1.280 12 H -0.281 1.281 13 C 0.082 3.918 14 N -0.667 5.667 15 C 0.127 3.873 16 H 0.110 0.890 17 C -0.156 4.156 18 C -0.086 4.086 19 S -0.162 6.162 20 C -0.088 4.088 21 C -0.123 4.123 22 C -0.107 4.107 23 C -0.138 4.138 24 C -0.088 4.088 25 C -0.090 4.090 26 H 0.036 0.964 27 H 0.029 0.971 28 H 0.072 0.928 29 H -0.017 1.017 30 H -0.018 1.018 31 H 0.261 0.739 32 H 0.049 0.951 33 H 0.019 0.981 34 H 0.354 0.646 35 H 0.058 0.942 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.128 0.872 39 H 0.132 0.868 40 H 0.149 0.851 41 H 0.140 0.860 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.487 0.240 21.116 21.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.090 4.090 3 H 0.076 0.924 4 C -0.004 4.004 5 C -0.563 4.563 6 H 0.081 0.919 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.786 3.214 10 H -0.183 1.183 11 H -0.206 1.206 12 H -0.207 1.207 13 C -0.047 4.047 14 N -0.297 5.297 15 C 0.018 3.982 16 H 0.128 0.872 17 C -0.196 4.196 18 C -0.235 4.235 19 S 0.080 5.920 20 C -0.201 4.201 21 C -0.146 4.146 22 C -0.127 4.127 23 C -0.158 4.158 24 C -0.108 4.108 25 C -0.097 4.097 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.091 0.909 29 H 0.001 0.999 30 H 0.001 0.999 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.037 0.963 34 H 0.174 0.826 35 H 0.077 0.923 36 H 0.121 0.879 37 H 0.127 0.873 38 H 0.146 0.854 39 H 0.150 0.850 40 H 0.167 0.833 41 H 0.157 0.843 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.350 -1.040 21.289 21.443 hybrid contribution 0.370 1.038 -1.571 1.919 sum -1.980 -0.002 19.718 19.817 Atomic orbital electron populations 1.21476 0.94654 1.00027 1.00630 1.20975 0.96734 0.98430 0.92827 0.92377 1.18997 0.93854 0.94445 0.93127 1.21668 1.34199 1.08527 0.91953 0.91884 1.25971 0.95271 0.96064 1.02730 1.70126 1.40440 1.23112 1.24175 0.85458 0.78068 0.78944 0.78960 1.18328 1.20554 1.20671 1.21772 0.96423 0.96938 0.89573 1.60560 1.63407 1.05775 1.00004 1.20144 0.91078 0.92577 0.94441 0.87220 1.22386 0.97512 1.02771 0.96970 1.23770 1.05792 0.92795 1.01104 1.85482 1.09354 1.14745 1.82415 1.21495 0.97324 0.96597 1.04671 1.21070 0.93992 0.97520 1.02001 1.21336 0.95278 0.98549 0.97524 1.21442 1.00947 0.93217 1.00151 1.21497 0.92693 0.99995 0.96632 1.19652 0.96020 0.93572 1.00439 0.94516 0.95174 0.90946 0.99909 0.99926 0.93012 0.93254 0.96316 0.82595 0.92323 0.87898 0.87313 0.85421 0.85013 0.83327 0.84265 0.84518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.12 8.89 71.98 0.64 -3.48 16 2 C -0.07 -2.84 2.52 -10.79 -0.03 -2.87 16 3 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 4 C 0.03 1.78 4.45 29.85 0.13 1.91 16 5 C -0.53 -29.82 8.41 25.60 0.22 -29.61 16 6 H 0.06 3.43 7.06 -2.91 -0.02 3.40 16 7 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 8 N -0.94 -58.18 13.29 21.45 0.28 -57.90 16 9 Si 0.96 44.70 29.54 68.60 2.03 46.72 16 10 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 C 0.08 2.77 4.10 86.30 0.35 3.13 16 14 N -0.67 -16.50 4.59 -498.48 -2.29 -18.79 16 15 C 0.13 2.78 2.66 43.59 0.12 2.90 16 16 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 17 C -0.16 -3.16 4.72 30.40 0.14 -3.02 16 18 C -0.09 -1.48 6.53 72.16 0.47 -1.01 16 19 S -0.16 -3.82 21.98 -56.49 -1.24 -5.06 16 20 C -0.09 -2.33 6.05 22.59 0.14 -2.19 16 21 C -0.12 -3.05 9.65 22.49 0.22 -2.83 16 22 C -0.11 -2.42 10.06 22.18 0.22 -2.20 16 23 C -0.14 -3.28 10.03 22.18 0.22 -3.06 16 24 C -0.09 -2.31 8.36 22.42 0.19 -2.12 16 25 C -0.09 -2.35 4.53 -19.82 -0.09 -2.44 16 26 H 0.04 1.47 6.95 -2.38 -0.02 1.45 16 27 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.07 2.24 7.75 -2.38 -0.02 2.23 16 29 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 30 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 31 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 32 H 0.05 1.88 6.61 -2.39 -0.02 1.86 16 33 H 0.02 0.66 6.56 -2.39 -0.02 0.65 16 34 H 0.35 7.54 8.86 -89.70 -0.79 6.74 16 35 H 0.06 1.57 6.37 -2.39 -0.02 1.55 16 36 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.11 1.51 8.07 -2.39 -0.02 1.49 16 38 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.13 2.88 8.05 -2.91 -0.02 2.86 16 40 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16 41 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 42 H 0.14 3.58 7.26 -2.91 -0.02 3.55 16 Total: -1.00 -66.81 342.10 2.39 -64.42 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.21 Total: 17.23 kcal Atomic # 6 Polarization: -50.03 SS G_CDS: 3.40 Total: -46.62 kcal Atomic # 7 Polarization: -74.68 SS G_CDS: -2.00 Total: -76.68 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: -3.82 SS G_CDS: -1.24 Total: -5.06 kcal Total: -66.81 2.39 -64.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602506520.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.895 kcal (2) G-P(sol) polarization free energy of solvation -66.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.98 seconds