Wall clock time and date at job start Tue Mar 31 2020 06:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47058 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99864 * 2 1 3 5 5 C 1.50704 * 109.46824 * 65.00284 * 4 2 1 6 6 H 1.08003 * 120.00118 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99959 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00258 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00047 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47088 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47122 * 119.99920 * 9 7 5 12 12 H 1.48500 * 109.46949 * 239.99601 * 9 7 5 13 13 C 1.52993 * 109.46953 * 120.00166 * 2 1 3 14 14 N 1.46905 * 109.47198 * 295.00215 * 13 2 1 15 15 C 1.46900 * 110.99805 * 180.02562 * 14 13 2 16 16 H 1.09008 * 108.50536 * 181.12127 * 15 14 13 17 17 C 1.52142 * 108.66803 * 299.10789 * 15 14 13 18 18 S 1.82055 * 107.77506 * 174.21746 * 17 15 14 19 19 C 1.81330 * 100.87558 * 296.16576 * 18 17 15 20 20 C 1.50864 * 110.42626 * 46.07229 * 19 18 17 21 21 C 1.39627 * 114.82360 * 160.97881 * 20 19 18 22 22 C 1.37577 * 121.32018 * 178.10471 * 21 20 19 23 23 C 1.38284 * 119.26996 * 359.96198 * 22 21 20 24 24 C 1.37460 * 119.52080 * 0.46191 * 23 22 21 25 25 C 1.36932 * 125.60412 * 339.92037 * 20 19 18 26 26 H 1.08995 * 109.47217 * 300.00129 * 1 2 3 27 27 H 1.08999 * 109.46833 * 60.00154 * 1 2 3 28 28 H 1.09003 * 109.47200 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47003 * 184.99715 * 4 2 1 30 30 H 1.08998 * 109.47530 * 305.00493 * 4 2 1 31 31 H 0.97000 * 120.00410 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47555 * 175.00004 * 13 2 1 33 33 H 1.09003 * 109.47278 * 55.00090 * 13 2 1 34 34 H 1.00900 * 110.99905 * 56.04339 * 14 13 2 35 35 H 1.09006 * 109.79463 * 54.64529 * 17 15 14 36 36 H 1.09003 * 109.84710 * 293.81590 * 17 15 14 37 37 H 1.08995 * 109.30682 * 285.78334 * 19 18 17 38 38 H 1.08993 * 109.15348 * 166.26666 * 19 18 17 39 39 H 1.07999 * 119.33315 * 358.08453 * 21 20 19 40 40 H 1.08001 * 120.36366 * 179.97438 * 22 21 20 41 41 H 1.08005 * 120.23559 * 180.44609 * 23 22 21 42 42 H 1.08000 * 119.24710 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0571 -2.4766 6 1 1.0801 0.9743 -2.3757 7 6 1.9924 -0.4021 -3.7283 8 7 2.6756 -1.5192 -3.8512 9 14 1.4977 0.5623 -5.2497 10 1 0.7404 1.7734 -4.8435 11 1 2.7155 0.9669 -5.9970 12 1 0.6435 -0.2871 -6.1180 13 6 2.0400 -0.7213 1.2492 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6267 3.6671 16 1 1.7991 -0.0425 4.5276 17 6 1.4928 -2.0078 3.7478 18 16 2.2267 -2.8732 5.1714 19 6 3.9583 -2.9888 4.6460 20 6 4.4330 -1.6642 4.1019 21 6 5.8202 -1.5111 4.0593 22 6 6.3986 -0.3708 3.5514 23 6 5.5886 0.6427 3.0731 24 6 4.2225 0.4981 3.1219 25 6 3.6276 -0.6545 3.6470 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1264 -0.7994 -1.2055 30 1 1.6055 -1.7198 -1.2952 31 1 2.9229 -1.8422 -4.7318 32 1 3.1263 -0.7995 1.2056 33 1 1.6054 -1.7198 1.2951 34 1 0.6528 0.1793 2.4752 35 1 1.6988 -2.5623 2.8322 36 1 0.4159 -1.9138 3.8878 37 1 4.0499 -3.7502 3.8715 38 1 4.5736 -3.2685 5.5011 39 1 6.4516 -2.3036 4.4329 40 1 7.4735 -0.2686 3.5263 41 1 6.0262 1.5416 2.6643 42 1 3.5941 1.2923 2.7468 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602530513.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:24 Heat of formation + Delta-G solvation = 14.005393 kcal Electronic energy + Delta-G solvation = -21167.555742 eV Core-core repulsion = 18237.759972 eV Total energy + Delta-G solvation = -2929.795770 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.98435 -37.36626 -34.85469 -33.07578 -32.24871 -30.45102 -29.17663 -27.28769 -26.81527 -25.65335 -23.51054 -22.55231 -21.81594 -20.06251 -19.14425 -16.77526 -16.61597 -16.25134 -15.77727 -15.38076 -14.99776 -14.69930 -14.44177 -14.26348 -13.92839 -13.43378 -13.27744 -13.20536 -12.66756 -12.46007 -12.29837 -12.00953 -11.90122 -11.66046 -11.40946 -11.20674 -10.93299 -10.86942 -10.74704 -10.36802 -10.23095 -10.15659 -9.73190 -9.19895 -8.98261 -8.70469 -8.63947 -8.48778 -8.34825 -7.71198 -5.99200 -4.00547 1.27557 1.41704 1.63037 2.27571 3.30756 3.38554 3.42273 3.74442 4.26468 4.40118 4.47819 4.58164 4.80025 4.90289 4.98814 5.10124 5.18022 5.25575 5.36746 5.40286 5.47787 5.57386 5.68027 5.75838 5.84500 6.00664 6.01782 6.08261 6.22424 6.38511 6.42621 6.52398 6.54436 6.62755 6.87087 7.02475 7.07282 7.12705 7.23844 7.51730 7.67993 7.82930 8.00726 8.44189 9.06057 9.63159 11.12331 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018772 B = 0.004017 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.192452 B = 6968.790780 C = 7587.545778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.083 4.083 3 H 0.065 0.935 4 C 0.029 3.971 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.058 3.942 14 N -0.676 5.676 15 C 0.131 3.869 16 H 0.098 0.902 17 C -0.117 4.117 18 S -0.255 6.255 19 C -0.042 4.042 20 C -0.082 4.082 21 C -0.124 4.124 22 C -0.115 4.115 23 C -0.126 4.126 24 C -0.085 4.085 25 C -0.067 4.067 26 H 0.032 0.968 27 H 0.063 0.937 28 H 0.040 0.960 29 H 0.014 0.986 30 H 0.013 0.987 31 H 0.259 0.741 32 H 0.070 0.930 33 H 0.027 0.973 34 H 0.345 0.655 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.779 -0.014 18.671 18.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.101 4.101 3 H 0.083 0.917 4 C -0.009 4.009 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.070 4.070 14 N -0.308 5.308 15 C 0.020 3.980 16 H 0.116 0.884 17 C -0.267 4.267 18 S -0.028 6.028 19 C -0.190 4.190 20 C -0.084 4.084 21 C -0.144 4.144 22 C -0.134 4.134 23 C -0.144 4.144 24 C -0.103 4.103 25 C -0.068 4.068 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.032 0.968 30 H 0.031 0.969 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.165 0.835 35 H 0.114 0.886 36 H 0.126 0.874 37 H 0.114 0.886 38 H 0.130 0.870 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.852 -0.084 19.468 19.676 hybrid contribution -0.179 -0.061 -2.079 2.087 sum 2.673 -0.145 17.390 17.594 Atomic orbital electron populations 1.21752 0.96659 1.00439 1.00342 1.21211 0.94815 1.00034 0.94090 0.91657 1.19098 0.96089 0.95318 0.90386 1.21262 1.34580 1.08256 0.90946 0.92514 1.25018 0.95318 0.95068 0.99106 1.69977 1.39120 1.21260 1.23275 0.86588 0.78277 0.80136 0.83320 1.19728 1.21074 1.21117 1.22255 1.00804 0.94649 0.89331 1.60854 1.19755 1.49209 1.00966 1.20301 0.91063 0.91698 0.94930 0.88385 1.24243 1.03453 0.99857 0.99154 1.86850 1.07462 1.77926 1.30552 1.22306 0.95065 0.97437 1.04190 1.19296 0.93784 0.94306 1.00964 1.21136 0.93565 0.98324 1.01365 1.21028 0.99709 0.93972 0.98653 1.21115 0.94017 0.99265 0.99977 1.21550 0.94746 0.97737 0.96312 1.19225 0.94057 0.94268 0.99208 0.94914 0.91818 0.94045 0.96756 0.96861 0.93150 0.91125 0.95502 0.83550 0.88623 0.87367 0.88572 0.86999 0.86373 0.86078 0.85922 0.84239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 8.77 37.16 0.33 -2.07 16 2 C -0.08 -1.62 2.55 -90.62 -0.23 -1.85 16 3 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.18 8.41 -34.44 -0.29 -14.47 16 6 H 0.06 1.53 7.06 -52.48 -0.37 1.16 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 9 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.06 0.96 4.34 -3.82 -0.02 0.94 16 14 N -0.68 -8.96 5.07 -108.66 -0.55 -9.52 16 15 C 0.13 1.59 2.71 -69.53 -0.19 1.41 16 16 H 0.10 1.13 8.14 -51.92 -0.42 0.70 16 17 C -0.12 -1.37 5.72 36.72 0.21 -1.16 16 18 S -0.26 -2.99 22.34 -107.50 -2.40 -5.40 16 19 C -0.04 -0.45 6.14 36.09 0.22 -0.23 16 20 C -0.08 -1.01 5.77 -104.50 -0.60 -1.61 16 21 C -0.12 -1.41 9.43 -39.30 -0.37 -1.78 16 22 C -0.12 -1.31 10.06 -39.81 -0.40 -1.71 16 23 C -0.13 -1.55 10.04 -39.85 -0.40 -1.95 16 24 C -0.09 -1.15 8.08 -39.23 -0.32 -1.46 16 25 C -0.07 -0.88 4.54 -104.69 -0.48 -1.35 16 26 H 0.03 0.47 6.68 -51.93 -0.35 0.13 16 27 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.07 1.29 6.52 -51.93 -0.34 0.95 16 33 H 0.03 0.45 6.15 -51.93 -0.32 0.13 16 34 H 0.34 4.18 7.04 -39.29 -0.28 3.91 16 35 H 0.10 1.26 6.07 -51.93 -0.32 0.94 16 36 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.10 1.02 8.14 -51.92 -0.42 0.59 16 38 H 0.11 1.00 8.06 -51.92 -0.42 0.58 16 39 H 0.12 1.06 7.99 -52.49 -0.42 0.64 16 40 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 42 H 0.14 1.93 7.12 -52.49 -0.37 1.56 16 LS Contribution 339.08 15.07 5.11 5.11 Total: -1.00 -29.71 339.08 -11.36 -41.07 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -6.48 Total: 3.58 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: -2.76 Total: -25.23 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.19 Total: -35.69 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -2.99 SS G_CDS: -2.40 Total: -5.40 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.71 -11.36 -41.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602530513.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.075 kcal (2) G-P(sol) polarization free energy of solvation -29.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds