Wall clock time and date at job start Tue Mar 31 2020 06:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47058 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99864 * 2 1 3 5 5 C 1.50704 * 109.46824 * 65.00284 * 4 2 1 6 6 H 1.08003 * 120.00118 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99959 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00258 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00047 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47088 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47122 * 119.99920 * 9 7 5 12 12 H 1.48500 * 109.46949 * 239.99601 * 9 7 5 13 13 C 1.52993 * 109.46953 * 120.00166 * 2 1 3 14 14 N 1.46905 * 109.47198 * 295.00215 * 13 2 1 15 15 C 1.46900 * 110.99805 * 180.02562 * 14 13 2 16 16 H 1.09008 * 108.50536 * 181.12127 * 15 14 13 17 17 C 1.52142 * 108.66803 * 299.10789 * 15 14 13 18 18 S 1.82055 * 107.77506 * 174.21746 * 17 15 14 19 19 C 1.81330 * 100.87558 * 296.16576 * 18 17 15 20 20 C 1.50864 * 110.42626 * 46.07229 * 19 18 17 21 21 C 1.39627 * 114.82360 * 160.97881 * 20 19 18 22 22 C 1.37577 * 121.32018 * 178.10471 * 21 20 19 23 23 C 1.38284 * 119.26996 * 359.96198 * 22 21 20 24 24 C 1.37460 * 119.52080 * 0.46191 * 23 22 21 25 25 C 1.36932 * 125.60412 * 339.92037 * 20 19 18 26 26 H 1.08995 * 109.47217 * 300.00129 * 1 2 3 27 27 H 1.08999 * 109.46833 * 60.00154 * 1 2 3 28 28 H 1.09003 * 109.47200 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47003 * 184.99715 * 4 2 1 30 30 H 1.08998 * 109.47530 * 305.00493 * 4 2 1 31 31 H 0.97000 * 120.00410 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47555 * 175.00004 * 13 2 1 33 33 H 1.09003 * 109.47278 * 55.00090 * 13 2 1 34 34 H 1.00900 * 110.99905 * 56.04339 * 14 13 2 35 35 H 1.09006 * 109.79463 * 54.64529 * 17 15 14 36 36 H 1.09003 * 109.84710 * 293.81590 * 17 15 14 37 37 H 1.08995 * 109.30682 * 285.78334 * 19 18 17 38 38 H 1.08993 * 109.15348 * 166.26666 * 19 18 17 39 39 H 1.07999 * 119.33315 * 358.08453 * 21 20 19 40 40 H 1.08001 * 120.36366 * 179.97438 * 22 21 20 41 41 H 1.08005 * 120.23559 * 180.44609 * 23 22 21 42 42 H 1.08000 * 119.24710 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0571 -2.4766 6 1 1.0801 0.9743 -2.3757 7 6 1.9924 -0.4021 -3.7283 8 7 2.6756 -1.5192 -3.8512 9 14 1.4977 0.5623 -5.2497 10 1 0.7404 1.7734 -4.8435 11 1 2.7155 0.9669 -5.9970 12 1 0.6435 -0.2871 -6.1180 13 6 2.0400 -0.7213 1.2492 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6267 3.6671 16 1 1.7991 -0.0425 4.5276 17 6 1.4928 -2.0078 3.7478 18 16 2.2267 -2.8732 5.1714 19 6 3.9583 -2.9888 4.6460 20 6 4.4330 -1.6642 4.1019 21 6 5.8202 -1.5111 4.0593 22 6 6.3986 -0.3708 3.5514 23 6 5.5886 0.6427 3.0731 24 6 4.2225 0.4981 3.1219 25 6 3.6276 -0.6545 3.6470 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1264 -0.7994 -1.2055 30 1 1.6055 -1.7198 -1.2952 31 1 2.9229 -1.8422 -4.7318 32 1 3.1263 -0.7995 1.2056 33 1 1.6054 -1.7198 1.2951 34 1 0.6528 0.1793 2.4752 35 1 1.6988 -2.5623 2.8322 36 1 0.4159 -1.9138 3.8878 37 1 4.0499 -3.7502 3.8715 38 1 4.5736 -3.2685 5.5011 39 1 6.4516 -2.3036 4.4329 40 1 7.4735 -0.2686 3.5263 41 1 6.0262 1.5416 2.6643 42 1 3.5941 1.2923 2.7468 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602530513.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:24 Heat of formation + Delta-G solvation = -1.330722 kcal Electronic energy + Delta-G solvation = -21168.220766 eV Core-core repulsion = 18237.759972 eV Total energy + Delta-G solvation = -2930.460794 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 3.07 seconds Orbital eigenvalues (eV) -40.95424 -38.59112 -36.38923 -34.41903 -33.81337 -31.57940 -30.31046 -28.70348 -28.14018 -27.06742 -24.97946 -23.88955 -22.83077 -21.18993 -20.65740 -18.58672 -17.62193 -17.44938 -16.94235 -16.57493 -16.37703 -15.95542 -15.71786 -15.35071 -15.11247 -14.66524 -14.44383 -14.22474 -14.20883 -13.93183 -13.53547 -13.31972 -13.25047 -12.90835 -12.77309 -12.70524 -12.54121 -12.24629 -12.12152 -11.94918 -11.76990 -11.53133 -11.13042 -10.99709 -10.92955 -10.54903 -9.67498 -9.59103 -9.54193 -8.66838 -8.18158 -6.27331 0.34842 0.48484 0.73040 1.37730 1.39238 1.39948 1.52741 2.41365 2.81058 3.15631 3.19224 3.46933 3.66937 3.80315 4.01363 4.08514 4.18804 4.24045 4.28966 4.30828 4.41642 4.45912 4.53648 4.61120 4.67760 4.76052 4.86102 4.89335 5.04482 5.11318 5.15475 5.22963 5.38133 5.49202 5.50669 5.54248 5.59999 5.67437 5.79275 5.88487 5.98513 6.11132 6.29706 6.46456 6.89182 7.41352 8.94189 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018772 B = 0.004017 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.192452 B = 6968.790780 C = 7587.545778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 H 0.057 0.943 4 C 0.035 3.965 5 C -0.526 4.526 6 H 0.062 0.938 7 C -0.002 4.002 8 N -0.937 5.937 9 Si 0.960 3.040 10 H -0.260 1.260 11 H -0.281 1.281 12 H -0.280 1.280 13 C 0.079 3.921 14 N -0.669 5.669 15 C 0.137 3.863 16 H 0.110 0.890 17 C -0.113 4.113 18 S -0.262 6.262 19 C -0.039 4.039 20 C -0.094 4.094 21 C -0.128 4.128 22 C -0.120 4.120 23 C -0.139 4.139 24 C -0.104 4.104 25 C -0.084 4.084 26 H 0.071 0.929 27 H 0.044 0.956 28 H 0.039 0.961 29 H -0.019 1.019 30 H -0.013 1.013 31 H 0.261 0.739 32 H 0.050 0.950 33 H 0.025 0.975 34 H 0.355 0.645 35 H 0.078 0.922 36 H 0.123 0.877 37 H 0.097 0.903 38 H 0.133 0.867 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.133 0.867 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.388 0.567 19.680 19.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.092 4.092 3 H 0.076 0.924 4 C -0.003 4.003 5 C -0.564 4.564 6 H 0.080 0.920 7 C -0.199 4.199 8 N -0.578 5.578 9 Si 0.785 3.215 10 H -0.184 1.184 11 H -0.207 1.207 12 H -0.206 1.206 13 C -0.050 4.050 14 N -0.302 5.302 15 C 0.026 3.974 16 H 0.128 0.872 17 C -0.263 4.263 18 S -0.035 6.035 19 C -0.187 4.187 20 C -0.096 4.096 21 C -0.147 4.147 22 C -0.138 4.138 23 C -0.157 4.157 24 C -0.122 4.122 25 C -0.085 4.085 26 H 0.090 0.910 27 H 0.063 0.937 28 H 0.059 0.941 29 H -0.001 1.001 30 H 0.005 0.995 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.043 0.957 34 H 0.176 0.824 35 H 0.097 0.903 36 H 0.141 0.859 37 H 0.115 0.885 38 H 0.151 0.849 39 H 0.162 0.838 40 H 0.163 0.837 41 H 0.151 0.849 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.446 0.509 20.498 20.649 hybrid contribution 0.011 -0.264 -2.345 2.360 sum 2.457 0.245 18.153 18.320 Atomic orbital electron populations 1.21662 0.94736 1.00699 1.01338 1.20993 0.96306 0.98922 0.92975 0.92424 1.18979 0.93882 0.94503 0.92926 1.21665 1.34260 1.08503 0.91974 0.91967 1.25945 0.95267 0.96052 1.02661 1.70113 1.40434 1.23040 1.24175 0.85474 0.78061 0.78959 0.79038 1.18417 1.20654 1.20567 1.21824 0.99318 0.94420 0.89442 1.60720 1.20479 1.48713 1.00251 1.20304 0.90762 0.92032 0.94280 0.87204 1.24169 1.04382 0.99228 0.98491 1.86860 1.08346 1.77880 1.30390 1.22372 0.94620 0.96672 1.04999 1.19549 0.94386 0.94664 1.00953 1.21488 0.93546 0.98967 1.00710 1.21359 1.00943 0.93597 0.97947 1.21365 0.93929 1.00215 1.00149 1.21580 0.95328 0.97956 0.97370 1.19408 0.94652 0.94608 0.99829 0.90992 0.93689 0.94135 1.00056 0.99465 0.93001 0.93183 0.95670 0.82414 0.90291 0.85858 0.88465 0.84883 0.83835 0.83715 0.84894 0.85225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 8.77 71.98 0.63 -3.76 16 2 C -0.07 -2.90 2.55 -10.79 -0.03 -2.93 16 3 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 4 C 0.03 1.82 4.45 29.85 0.13 1.95 16 5 C -0.53 -29.62 8.41 25.60 0.22 -29.41 16 6 H 0.06 3.36 7.06 -2.91 -0.02 3.34 16 7 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 8 N -0.94 -57.54 13.29 21.45 0.28 -57.26 16 9 Si 0.96 44.45 29.54 68.60 2.03 46.48 16 10 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 13 C 0.08 2.63 4.34 86.30 0.37 3.00 16 14 N -0.67 -17.09 5.07 -497.69 -2.52 -19.61 16 15 C 0.14 3.18 2.71 43.74 0.12 3.30 16 16 H 0.11 2.33 8.14 -2.38 -0.02 2.31 16 17 C -0.11 -2.51 5.72 71.70 0.41 -2.10 16 18 S -0.26 -5.75 22.34 -56.49 -1.26 -7.02 16 19 C -0.04 -0.78 6.14 71.29 0.44 -0.34 16 20 C -0.09 -2.20 5.77 -19.78 -0.11 -2.31 16 21 C -0.13 -2.69 9.43 22.45 0.21 -2.47 16 22 C -0.12 -2.58 10.06 22.12 0.22 -2.35 16 23 C -0.14 -3.38 10.04 22.10 0.22 -3.16 16 24 C -0.10 -2.80 8.08 22.50 0.18 -2.62 16 25 C -0.08 -2.17 4.54 -19.91 -0.09 -2.26 16 26 H 0.07 1.92 6.68 -2.39 -0.02 1.90 16 27 H 0.04 1.72 6.95 -2.39 -0.02 1.70 16 28 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 29 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 30 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 31 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 32 H 0.05 1.88 6.52 -2.39 -0.02 1.87 16 33 H 0.03 0.85 6.15 -2.39 -0.01 0.83 16 34 H 0.35 7.84 7.04 -89.69 -0.63 7.21 16 35 H 0.08 2.04 6.07 -2.38 -0.01 2.02 16 36 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.10 1.93 8.14 -2.40 -0.02 1.91 16 38 H 0.13 2.05 8.06 -2.40 -0.02 2.03 16 39 H 0.14 2.19 7.99 -2.91 -0.02 2.17 16 40 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 41 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 42 H 0.13 3.64 7.12 -2.91 -0.02 3.62 16 Total: -1.00 -65.07 339.08 2.29 -62.78 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 0.37 Total: 19.74 kcal Atomic # 6 Polarization: -48.51 SS G_CDS: 3.39 Total: -45.12 kcal Atomic # 7 Polarization: -74.63 SS G_CDS: -2.24 Total: -76.87 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: -5.75 SS G_CDS: -1.26 Total: -7.02 kcal Total: -65.07 2.29 -62.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602530513.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.453 kcal (2) G-P(sol) polarization free energy of solvation -65.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.07 seconds