Wall clock time and date at job start Tue Mar 31 2020 06:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.45262 * 2 1 4 4 C 1.54275 * 110.40183 * 237.60859 * 2 1 3 5 5 C 1.53856 * 108.78283 * 213.34403 * 4 2 1 6 6 H 1.09002 * 109.97187 * 287.81140 * 5 4 2 7 7 N 1.46895 * 109.97405 * 166.53178 * 5 4 2 8 8 C 1.46900 * 111.00045 * 154.41260 * 7 5 4 9 9 H 1.09004 * 109.46741 * 38.00248 * 8 7 5 10 10 C 1.53003 * 109.47073 * 157.99683 * 8 7 5 11 11 C 1.50701 * 109.47248 * 294.75843 * 10 8 7 12 12 H 1.08001 * 119.99801 * 354.98723 * 11 10 8 13 13 C 1.37871 * 120.00133 * 174.98566 * 11 10 8 14 14 N 1.31519 * 119.99995 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00425 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46813 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47498 * 119.99851 * 15 13 11 18 18 H 1.48500 * 109.47446 * 240.00119 * 15 13 11 19 19 C 1.50693 * 109.47169 * 277.99745 * 8 7 5 20 20 C 1.38228 * 120.00334 * 319.72466 * 19 8 7 21 21 C 1.38233 * 120.00332 * 179.76178 * 20 19 8 22 22 C 1.38236 * 119.99734 * 0.51350 * 21 20 19 23 23 C 1.38231 * 120.00152 * 359.74163 * 22 21 20 24 24 C 1.38236 * 119.99874 * 139.99995 * 19 8 7 25 25 C 1.54729 * 107.10233 * 47.29601 * 5 4 2 26 26 S 1.83096 * 110.39856 * 122.38286 * 2 1 3 27 27 H 1.08997 * 109.47108 * 182.38751 * 1 2 3 28 28 H 1.09002 * 109.47462 * 302.39002 * 1 2 3 29 29 H 1.09006 * 109.46568 * 62.38554 * 1 2 3 30 30 H 1.09000 * 109.61067 * 333.17883 * 4 2 1 31 31 H 1.09001 * 109.60548 * 93.50886 * 4 2 1 32 32 H 1.00904 * 111.00083 * 30.45899 * 7 5 4 33 33 H 1.08992 * 109.47195 * 54.76456 * 10 8 7 34 34 H 1.09001 * 109.46925 * 174.76406 * 10 8 7 35 35 H 0.96998 * 120.00316 * 179.97438 * 14 13 11 36 36 H 1.08004 * 120.00176 * 0.02562 * 20 19 8 37 37 H 1.07998 * 120.00074 * 180.23095 * 21 20 19 38 38 H 1.08005 * 119.99763 * 179.72248 * 22 21 20 39 39 H 1.07998 * 120.00152 * 179.97438 * 23 22 21 40 40 H 1.08006 * 120.00157 * 359.97438 * 24 19 8 41 41 H 1.08998 * 110.88162 * 199.66228 * 25 5 4 42 42 H 1.08995 * 111.07015 * 76.05461 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9109 1.0213 0.0000 4 6 2.0678 -0.7746 -1.2210 5 6 3.3810 -1.4722 -0.8260 6 1 4.1769 -0.7350 -0.7197 7 7 3.7483 -2.4645 -1.8449 8 6 5.1983 -2.6996 -1.8522 9 1 5.5740 -2.6847 -0.8291 10 6 5.4908 -4.0625 -2.4830 11 6 4.9199 -5.1520 -1.6123 12 1 4.4721 -4.9042 -0.6613 13 6 4.9693 -6.4651 -2.0298 14 7 5.5151 -6.7669 -3.1877 15 14 4.2611 -7.8155 -0.9509 16 1 3.7095 -7.2181 0.2917 17 1 3.1789 -8.5193 -1.6850 18 1 5.3322 -8.7828 -0.6013 19 6 5.8783 -1.6192 -2.6529 20 6 5.3070 -1.1657 -3.8270 21 6 5.9283 -0.1711 -4.5590 22 6 7.1263 0.3625 -4.1222 23 6 7.7004 -0.0946 -2.9508 24 6 7.0764 -1.0855 -2.2161 25 6 3.1314 -2.1794 0.5274 26 16 2.1682 -0.9191 1.4493 27 1 -0.3633 -1.0267 0.0428 28 1 -0.3634 0.5505 0.8678 29 1 -0.3633 0.4764 -0.9107 30 1 1.3365 -1.5206 -1.5321 31 1 2.2542 -0.0811 -2.0410 32 1 3.4230 -2.1831 -2.7576 33 1 5.0344 -4.1108 -3.4716 34 1 6.5687 -4.1972 -2.5735 35 1 5.5502 -7.6907 -3.4813 36 1 4.3730 -1.5854 -4.1705 37 1 5.4800 0.1858 -5.4744 38 1 7.6140 1.1365 -4.6964 39 1 8.6366 0.3220 -2.6097 40 1 7.5249 -1.4427 -1.3008 41 1 4.0728 -2.3945 1.0329 42 1 2.5487 -3.0905 0.3918 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602579554.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:11 Heat of formation + Delta-G solvation = 11.845591 kcal Electronic energy + Delta-G solvation = -21213.982687 eV Core-core repulsion = 18284.093261 eV Total energy + Delta-G solvation = -2929.889426 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.40672 -37.38313 -34.93860 -32.75172 -31.68775 -30.69190 -29.27903 -28.14393 -26.59454 -24.53802 -22.50554 -22.05894 -21.90737 -20.33561 -19.65509 -17.12021 -16.49914 -16.10212 -15.80527 -14.96594 -14.82379 -14.61191 -14.20492 -14.03510 -13.66172 -13.32613 -13.10398 -12.86635 -12.68435 -12.59082 -12.36823 -12.08637 -11.69380 -11.42608 -11.20692 -11.12809 -11.02556 -10.91732 -10.75501 -10.58648 -10.50790 -10.18429 -9.84834 -9.61249 -9.06503 -8.68398 -8.31054 -8.27929 -7.89429 -7.58095 -5.92339 -3.90982 1.63582 1.64514 1.93713 2.51214 3.36090 3.44022 3.48420 4.04622 4.39934 4.53203 4.68938 4.85028 4.91964 5.10166 5.13391 5.19372 5.25405 5.30375 5.36479 5.38689 5.45438 5.60477 5.68276 5.74654 5.78771 5.80698 5.82816 6.01423 6.02325 6.10441 6.21969 6.25962 6.33701 6.69635 6.71257 6.74865 6.91191 7.26435 7.39591 7.58504 7.86644 7.91243 8.07449 8.49494 9.13440 9.70704 11.19419 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.008940 B = 0.006923 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3131.268868 B = 4043.796886 C = 6467.146460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.038 4.038 3 H 0.094 0.906 4 C -0.131 4.131 5 C 0.082 3.918 6 H 0.055 0.945 7 N -0.647 5.647 8 C 0.129 3.871 9 H 0.076 0.924 10 C 0.041 3.959 11 C -0.489 4.489 12 H 0.059 0.941 13 C 0.052 3.948 14 N -0.901 5.901 15 Si 0.889 3.111 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.288 1.288 19 C -0.093 4.093 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.136 4.136 23 C -0.120 4.120 24 C -0.116 4.116 25 C -0.046 4.046 26 S -0.313 6.313 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.337 0.663 33 H 0.023 0.977 34 H 0.017 0.983 35 H 0.257 0.743 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.098 0.902 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.824 16.016 1.308 16.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 H 0.112 0.888 4 C -0.169 4.169 5 C -0.030 4.030 6 H 0.073 0.927 7 N -0.278 5.278 8 C 0.020 3.980 9 H 0.094 0.906 10 C 0.004 3.996 11 C -0.528 4.528 12 H 0.078 0.922 13 C -0.147 4.147 14 N -0.542 5.542 15 Si 0.717 3.283 16 H -0.198 1.198 17 H -0.213 1.213 18 H -0.214 1.214 19 C -0.095 4.095 20 C -0.138 4.138 21 C -0.137 4.137 22 C -0.154 4.154 23 C -0.138 4.138 24 C -0.135 4.135 25 C -0.195 4.195 26 S -0.088 6.088 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.158 0.842 33 H 0.041 0.959 34 H 0.035 0.965 35 H 0.067 0.933 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.116 0.884 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.099 15.476 2.783 16.250 hybrid contribution 0.275 -0.217 -1.196 1.246 sum -3.823 15.259 1.588 15.811 Atomic orbital electron populations 1.21867 0.92454 1.03110 1.01830 1.23557 0.98786 1.00645 0.93676 0.88758 1.22555 0.97815 0.99456 0.97104 1.22459 0.95910 0.92186 0.92401 0.92737 1.60682 1.14379 1.44533 1.08221 1.21043 0.84534 0.94399 0.98048 0.90622 1.19099 0.96406 0.87683 0.96404 1.21100 1.36726 0.90672 1.04270 0.92243 1.24979 0.95852 0.98772 0.95127 1.69975 1.45729 1.18326 1.20157 0.86586 0.78700 0.82202 0.80786 1.19761 1.21273 1.21399 1.21170 0.95711 0.96593 0.95995 1.20946 1.00591 0.97259 0.95002 1.21053 0.95899 0.97257 0.99514 1.21020 0.96398 1.00901 0.97098 1.21091 0.99614 0.97648 0.95489 1.21093 0.95442 0.96710 1.00242 1.24255 1.01547 0.98254 0.95457 1.87463 1.65599 1.38401 1.17326 0.91420 0.92148 0.91850 0.89477 0.90445 0.84216 0.95870 0.96518 0.93314 0.86292 0.86603 0.86760 0.86608 0.86251 0.88403 0.87797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 9.18 37.16 0.34 -0.97 16 2 C -0.04 -0.43 3.86 -26.06 -0.10 -0.53 16 3 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.13 -1.57 5.25 -25.62 -0.13 -1.70 16 5 C 0.08 1.20 2.66 -66.36 -0.18 1.02 16 6 H 0.05 0.82 7.55 -51.93 -0.39 0.43 16 7 N -0.65 -10.99 5.77 -99.54 -0.57 -11.57 16 8 C 0.13 2.44 2.02 -68.87 -0.14 2.30 16 9 H 0.08 1.47 7.67 -51.93 -0.40 1.07 16 10 C 0.04 1.01 4.63 -27.88 -0.13 0.88 16 11 C -0.49 -13.17 8.84 -34.44 -0.30 -13.47 16 12 H 0.06 1.58 7.75 -52.49 -0.41 1.17 16 13 C 0.05 1.47 5.46 -17.82 -0.10 1.38 16 14 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 15 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 C -0.09 -1.56 4.47 -104.63 -0.47 -2.03 16 20 C -0.12 -1.84 9.15 -39.59 -0.36 -2.20 16 21 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 22 C -0.14 -1.76 10.05 -39.58 -0.40 -2.16 16 23 C -0.12 -1.64 10.05 -39.58 -0.40 -2.04 16 24 C -0.12 -1.81 9.67 -39.58 -0.38 -2.19 16 25 C -0.05 -0.72 6.86 38.07 0.26 -0.46 16 26 S -0.31 -4.46 22.69 -107.50 -2.44 -6.90 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 1.08 7.86 -51.93 -0.41 0.68 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.34 5.37 6.09 -39.29 -0.24 5.13 16 33 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.12 1.75 6.52 -52.48 -0.34 1.41 16 37 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.11 1.19 8.06 -52.48 -0.42 0.76 16 39 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.12 1.75 8.04 -52.48 -0.42 1.33 16 41 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 42 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 LS Contribution 352.04 15.07 5.31 5.31 Total: -1.00 -29.48 352.04 -11.70 -41.17 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -6.82 Total: 5.51 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -2.89 Total: -24.18 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.16 Total: -37.59 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -4.46 SS G_CDS: -2.44 Total: -6.90 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.48 -11.70 -41.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602579554.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.018 kcal (2) G-P(sol) polarization free energy of solvation -29.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds