Wall clock time and date at job start Tue Mar 31 2020 06:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.45262 * 2 1 4 4 C 1.54275 * 110.40183 * 237.60859 * 2 1 3 5 5 C 1.53856 * 108.78283 * 213.34403 * 4 2 1 6 6 H 1.09002 * 109.97187 * 287.81140 * 5 4 2 7 7 N 1.46895 * 109.97405 * 166.53178 * 5 4 2 8 8 C 1.46900 * 111.00045 * 154.41260 * 7 5 4 9 9 H 1.09004 * 109.46741 * 38.00248 * 8 7 5 10 10 C 1.53003 * 109.47073 * 157.99683 * 8 7 5 11 11 C 1.50701 * 109.47248 * 294.75843 * 10 8 7 12 12 H 1.08001 * 119.99801 * 354.98723 * 11 10 8 13 13 C 1.37871 * 120.00133 * 174.98566 * 11 10 8 14 14 N 1.31519 * 119.99995 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00425 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46813 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47498 * 119.99851 * 15 13 11 18 18 H 1.48500 * 109.47446 * 240.00119 * 15 13 11 19 19 C 1.50693 * 109.47169 * 277.99745 * 8 7 5 20 20 C 1.38228 * 120.00334 * 319.72466 * 19 8 7 21 21 C 1.38233 * 120.00332 * 179.76178 * 20 19 8 22 22 C 1.38236 * 119.99734 * 0.51350 * 21 20 19 23 23 C 1.38231 * 120.00152 * 359.74163 * 22 21 20 24 24 C 1.38236 * 119.99874 * 139.99995 * 19 8 7 25 25 C 1.54729 * 107.10233 * 47.29601 * 5 4 2 26 26 S 1.83096 * 110.39856 * 122.38286 * 2 1 3 27 27 H 1.08997 * 109.47108 * 182.38751 * 1 2 3 28 28 H 1.09002 * 109.47462 * 302.39002 * 1 2 3 29 29 H 1.09006 * 109.46568 * 62.38554 * 1 2 3 30 30 H 1.09000 * 109.61067 * 333.17883 * 4 2 1 31 31 H 1.09001 * 109.60548 * 93.50886 * 4 2 1 32 32 H 1.00904 * 111.00083 * 30.45899 * 7 5 4 33 33 H 1.08992 * 109.47195 * 54.76456 * 10 8 7 34 34 H 1.09001 * 109.46925 * 174.76406 * 10 8 7 35 35 H 0.96998 * 120.00316 * 179.97438 * 14 13 11 36 36 H 1.08004 * 120.00176 * 0.02562 * 20 19 8 37 37 H 1.07998 * 120.00074 * 180.23095 * 21 20 19 38 38 H 1.08005 * 119.99763 * 179.72248 * 22 21 20 39 39 H 1.07998 * 120.00152 * 179.97438 * 23 22 21 40 40 H 1.08006 * 120.00157 * 359.97438 * 24 19 8 41 41 H 1.08998 * 110.88162 * 199.66228 * 25 5 4 42 42 H 1.08995 * 111.07015 * 76.05461 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9109 1.0213 0.0000 4 6 2.0678 -0.7746 -1.2210 5 6 3.3810 -1.4722 -0.8260 6 1 4.1769 -0.7350 -0.7197 7 7 3.7483 -2.4645 -1.8449 8 6 5.1983 -2.6996 -1.8522 9 1 5.5740 -2.6847 -0.8291 10 6 5.4908 -4.0625 -2.4830 11 6 4.9199 -5.1520 -1.6123 12 1 4.4721 -4.9042 -0.6613 13 6 4.9693 -6.4651 -2.0298 14 7 5.5151 -6.7669 -3.1877 15 14 4.2611 -7.8155 -0.9509 16 1 3.7095 -7.2181 0.2917 17 1 3.1789 -8.5193 -1.6850 18 1 5.3322 -8.7828 -0.6013 19 6 5.8783 -1.6192 -2.6529 20 6 5.3070 -1.1657 -3.8270 21 6 5.9283 -0.1711 -4.5590 22 6 7.1263 0.3625 -4.1222 23 6 7.7004 -0.0946 -2.9508 24 6 7.0764 -1.0855 -2.2161 25 6 3.1314 -2.1794 0.5274 26 16 2.1682 -0.9191 1.4493 27 1 -0.3633 -1.0267 0.0428 28 1 -0.3634 0.5505 0.8678 29 1 -0.3633 0.4764 -0.9107 30 1 1.3365 -1.5206 -1.5321 31 1 2.2542 -0.0811 -2.0410 32 1 3.4230 -2.1831 -2.7576 33 1 5.0344 -4.1108 -3.4716 34 1 6.5687 -4.1972 -2.5735 35 1 5.5502 -7.6907 -3.4813 36 1 4.3730 -1.5854 -4.1705 37 1 5.4800 0.1858 -5.4744 38 1 7.6140 1.1365 -4.6964 39 1 8.6366 0.3220 -2.6097 40 1 7.5249 -1.4427 -1.3008 41 1 4.0728 -2.3945 1.0329 42 1 2.5487 -3.0905 0.3918 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602579554.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:06 Heat of formation + Delta-G solvation = -3.148119 kcal Electronic energy + Delta-G solvation = -21214.632863 eV Core-core repulsion = 18284.093261 eV Total energy + Delta-G solvation = -2930.539602 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 4.15 seconds Orbital eigenvalues (eV) -40.63241 -38.54046 -36.27172 -34.62466 -32.94782 -31.80173 -30.63506 -29.79165 -27.65706 -26.25610 -23.77193 -23.44204 -22.99375 -21.50592 -21.06672 -18.66238 -17.80056 -17.56720 -17.03788 -16.54534 -16.14485 -16.00174 -15.39832 -15.29167 -14.80622 -14.39519 -14.32637 -14.22823 -14.15759 -13.82629 -13.61692 -13.51194 -13.12543 -12.84147 -12.61696 -12.50359 -12.34706 -12.30867 -12.13382 -11.94175 -11.90630 -11.65104 -11.42875 -11.12541 -10.88494 -10.50073 -9.79800 -9.53985 -9.25309 -8.72700 -8.10256 -6.15084 0.49374 0.52627 0.84387 1.39346 1.40284 1.42049 1.54003 2.46339 2.91296 3.17543 3.27955 3.65309 3.73345 3.92251 3.94191 4.02667 4.12155 4.17830 4.20889 4.30845 4.40973 4.48536 4.60838 4.68510 4.68991 4.74163 4.85141 4.90705 4.93688 5.00256 5.11439 5.15264 5.18327 5.29282 5.47612 5.58138 5.61060 5.63200 5.70137 5.88509 6.15791 6.24840 6.38699 6.58252 6.98043 7.50537 9.01873 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.008940 B = 0.006923 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3131.268868 B = 4043.796886 C = 6467.146460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.026 4.026 3 H 0.110 0.890 4 C -0.123 4.123 5 C 0.091 3.909 6 H 0.052 0.948 7 N -0.659 5.659 8 C 0.148 3.852 9 H 0.063 0.937 10 C 0.052 3.948 11 C -0.494 4.494 12 H 0.058 0.942 13 C -0.002 4.002 14 N -0.939 5.939 15 Si 0.953 3.047 16 H -0.266 1.266 17 H -0.283 1.283 18 H -0.284 1.284 19 C -0.115 4.115 20 C -0.131 4.131 21 C -0.119 4.119 22 C -0.131 4.131 23 C -0.121 4.121 24 C -0.134 4.134 25 C -0.047 4.047 26 S -0.335 6.335 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.343 0.657 33 H -0.004 1.004 34 H -0.015 1.015 35 H 0.258 0.742 36 H 0.119 0.881 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.142 0.858 40 H 0.117 0.883 41 H 0.085 0.915 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.536 18.332 0.918 18.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.155 4.155 3 H 0.128 0.872 4 C -0.162 4.162 5 C -0.021 4.021 6 H 0.070 0.930 7 N -0.291 5.291 8 C 0.038 3.962 9 H 0.081 0.919 10 C 0.014 3.986 11 C -0.532 4.532 12 H 0.077 0.923 13 C -0.198 4.198 14 N -0.581 5.581 15 Si 0.779 3.221 16 H -0.190 1.190 17 H -0.209 1.209 18 H -0.210 1.210 19 C -0.117 4.117 20 C -0.150 4.150 21 C -0.137 4.137 22 C -0.148 4.148 23 C -0.139 4.139 24 C -0.153 4.153 25 C -0.196 4.196 26 S -0.109 6.109 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.117 0.883 32 H 0.164 0.836 33 H 0.015 0.985 34 H 0.003 0.997 35 H 0.067 0.933 36 H 0.137 0.863 37 H 0.162 0.838 38 H 0.166 0.834 39 H 0.160 0.840 40 H 0.135 0.865 41 H 0.103 0.897 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.821 17.807 2.406 18.605 hybrid contribution 0.530 -0.860 -1.105 1.497 sum -4.291 16.947 1.301 17.531 Atomic orbital electron populations 1.21855 0.90878 1.02899 1.03293 1.23709 0.99934 1.00563 0.91285 0.87152 1.22498 0.96035 0.99643 0.97991 1.22407 0.97243 0.91416 0.91036 0.93018 1.60509 1.13186 1.46160 1.09237 1.20481 0.86160 0.92500 0.97084 0.91855 1.18867 0.93814 0.90774 0.95097 1.21435 1.35897 0.91552 1.04344 0.92341 1.25791 0.96404 1.01264 0.96371 1.70100 1.47291 1.18796 1.21902 0.85576 0.77973 0.79294 0.79242 1.18991 1.20894 1.21002 1.20947 0.96702 0.97120 0.96944 1.21061 1.00981 0.98123 0.94823 1.21404 0.96022 0.96215 1.00044 1.21465 0.95883 1.00831 0.96653 1.21419 1.00372 0.96668 0.95438 1.21237 0.95356 0.97821 1.00891 1.24109 1.00890 0.98186 0.96387 1.87517 1.65661 1.38358 1.19374 0.92421 0.91577 0.89490 0.89804 0.88293 0.83561 0.98531 0.99679 0.93301 0.86311 0.83790 0.83362 0.83975 0.86510 0.89668 0.89784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 9.18 71.98 0.66 -1.55 16 2 C -0.03 -0.54 3.86 31.03 0.12 -0.43 16 3 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 4 C -0.12 -2.74 5.25 31.31 0.16 -2.57 16 5 C 0.09 2.62 2.66 45.79 0.12 2.75 16 6 H 0.05 1.55 7.55 -2.39 -0.02 1.53 16 7 N -0.66 -22.93 5.77 -468.83 -2.71 -25.63 16 8 C 0.15 5.83 2.02 44.17 0.09 5.92 16 9 H 0.06 2.60 7.67 -2.38 -0.02 2.58 16 10 C 0.05 2.67 4.63 29.85 0.14 2.80 16 11 C -0.49 -27.55 8.84 25.60 0.23 -27.32 16 12 H 0.06 3.21 7.75 -2.91 -0.02 3.19 16 13 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 14 N -0.94 -57.42 13.29 21.45 0.28 -57.13 16 15 Si 0.95 45.43 29.54 68.60 2.03 47.45 16 16 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 17 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 18 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 19 C -0.12 -3.93 4.47 -19.87 -0.09 -4.01 16 20 C -0.13 -3.95 9.15 22.27 0.20 -3.75 16 21 C -0.12 -2.91 10.05 22.27 0.22 -2.69 16 22 C -0.13 -2.95 10.05 22.27 0.22 -2.72 16 23 C -0.12 -3.03 10.05 22.27 0.22 -2.81 16 24 C -0.13 -4.17 9.67 22.27 0.22 -3.96 16 25 C -0.05 -1.48 6.86 72.57 0.50 -0.98 16 26 S -0.33 -9.33 22.69 -56.49 -1.28 -10.62 16 27 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 29 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.08 1.96 7.86 -2.39 -0.02 1.94 16 31 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.34 11.04 6.09 -89.69 -0.55 10.50 16 33 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H -0.02 -0.85 8.14 -2.39 -0.02 -0.87 16 35 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 36 H 0.12 3.47 6.52 -2.91 -0.02 3.45 16 37 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 38 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 39 H 0.14 2.75 8.06 -2.91 -0.02 2.72 16 40 H 0.12 3.54 8.04 -2.91 -0.02 3.52 16 41 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 42 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -65.55 352.04 2.24 -63.31 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 0.44 Total: 23.62 kcal Atomic # 6 Polarization: -44.48 SS G_CDS: 3.48 Total: -41.00 kcal Atomic # 7 Polarization: -80.34 SS G_CDS: -2.42 Total: -82.77 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Atomic # 16 Polarization: -9.33 SS G_CDS: -1.28 Total: -10.62 kcal Total: -65.55 2.24 -63.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602579554.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.160 kcal (2) G-P(sol) polarization free energy of solvation -65.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.16 seconds