Wall clock time and date at job start Tue Mar 31 2020 06:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.76154 * 2 1 4 4 C 1.55129 * 111.03331 * 236.37260 * 2 1 3 5 5 C 1.53854 * 106.90096 * 199.62694 * 4 2 1 6 6 H 1.08992 * 109.61361 * 287.33929 * 5 4 2 7 7 N 1.46904 * 109.60908 * 167.00018 * 5 4 2 8 8 C 1.46904 * 110.99864 * 155.00370 * 7 5 4 9 9 H 1.09007 * 109.46973 * 324.99955 * 8 7 5 10 10 C 1.53001 * 109.47099 * 205.00150 * 8 7 5 11 11 C 1.50704 * 109.47061 * 64.99912 * 10 8 7 12 12 H 1.07999 * 119.99707 * 0.02562 * 11 10 8 13 13 C 1.37877 * 119.99778 * 180.02562 * 11 10 8 14 14 N 1.31511 * 120.00016 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 119.99898 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47279 * 90.00411 * 15 13 11 17 17 H 1.48502 * 109.46947 * 210.00103 * 15 13 11 18 18 H 1.48497 * 109.47635 * 329.99982 * 15 13 11 19 19 C 1.50697 * 109.47444 * 85.00061 * 8 7 5 20 20 C 1.38238 * 119.99760 * 39.72384 * 19 8 7 21 21 C 1.38243 * 119.99765 * 179.76544 * 20 19 8 22 22 C 1.38228 * 120.00019 * 0.51143 * 21 20 19 23 23 C 1.38239 * 119.99840 * 359.74707 * 22 21 20 24 24 C 1.38226 * 120.00135 * 359.97438 * 23 22 21 25 25 C 1.54275 * 108.92407 * 47.25941 * 5 4 2 26 26 S 1.83094 * 104.64909 * 332.04597 * 25 5 4 27 27 H 1.09005 * 109.47181 * 297.96505 * 1 2 3 28 28 H 1.09003 * 109.46843 * 57.96237 * 1 2 3 29 29 H 1.08997 * 109.47404 * 177.95658 * 1 2 3 30 30 H 1.08997 * 109.97817 * 318.99139 * 4 2 1 31 31 H 1.08999 * 109.97380 * 80.27046 * 4 2 1 32 32 H 1.00900 * 111.00466 * 278.95399 * 7 5 4 33 33 H 1.09001 * 109.47097 * 184.99858 * 10 8 7 34 34 H 1.08994 * 109.46936 * 305.00001 * 10 8 7 35 35 H 0.97000 * 120.00284 * 179.97438 * 14 13 11 36 36 H 1.08005 * 120.00175 * 0.02562 * 20 19 8 37 37 H 1.08005 * 119.99638 * 180.23103 * 21 20 19 38 38 H 1.07999 * 120.00221 * 179.71950 * 22 21 20 39 39 H 1.08007 * 119.99526 * 179.97438 * 23 22 21 40 40 H 1.08003 * 120.00069 * 179.97438 * 24 23 22 41 41 H 1.08997 * 110.40087 * 213.25110 * 25 5 4 42 42 H 1.09003 * 110.40451 * 90.84018 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9164 1.0192 0.0000 4 6 2.0868 -0.8018 -1.2056 5 6 3.5415 -1.1692 -0.8650 6 1 4.1678 -0.2794 -0.9278 7 7 4.0285 -2.1824 -1.8107 8 6 5.4923 -2.1355 -1.9249 9 1 5.8306 -1.1029 -1.8385 10 6 5.9162 -2.6990 -3.2827 11 6 5.4017 -1.8042 -4.3808 12 1 4.8300 -0.9216 -4.1347 13 6 5.6610 -2.1123 -5.6995 14 7 5.2125 -1.3312 -6.6577 15 14 6.6505 -3.6385 -6.1248 16 1 5.7318 -4.7928 -6.2946 17 1 7.3957 -3.4089 -7.3887 18 1 7.6108 -3.9272 -5.0296 19 6 6.1088 -2.9599 -0.8243 20 6 5.5359 -4.1637 -0.4588 21 6 6.1042 -4.9222 0.5476 22 6 7.2392 -4.4719 1.1955 23 6 7.8090 -3.2656 0.8335 24 6 7.2440 -2.5098 -0.1766 25 6 3.5915 -1.7376 0.5683 26 16 2.1831 -0.9461 1.4298 27 1 -0.3634 0.4819 0.9077 28 1 -0.3633 0.5452 -0.8712 29 1 -0.3634 -1.0270 -0.0366 30 1 1.4989 -1.7077 -1.3538 31 1 2.0588 -0.1880 -2.1059 32 1 3.7159 -3.1044 -1.5456 33 1 7.0040 -2.7468 -3.3327 34 1 5.5025 -3.6999 -3.4059 35 1 5.3952 -1.5477 -7.5854 36 1 4.6467 -4.5136 -0.9622 37 1 5.6587 -5.8645 0.8306 38 1 7.6806 -5.0624 1.9848 39 1 8.6955 -2.9136 1.3401 40 1 7.6890 -1.5671 -0.4591 41 1 4.5314 -1.4693 1.0508 42 1 3.4672 -2.8204 0.5523 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602579556.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:16 Heat of formation + Delta-G solvation = 17.596777 kcal Electronic energy + Delta-G solvation = -21328.359293 eV Core-core repulsion = 18398.719257 eV Total energy + Delta-G solvation = -2929.640036 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = -1.07 seconds Orbital eigenvalues (eV) -39.59507 -37.39589 -34.94631 -32.77316 -31.75447 -30.77063 -29.61550 -28.39675 -26.56393 -24.60429 -22.72869 -21.93740 -21.74202 -20.47567 -19.72627 -17.24861 -16.59164 -16.41119 -15.53370 -15.23468 -14.85264 -14.65332 -14.28571 -14.01259 -13.57069 -13.32129 -13.24339 -13.07071 -12.70580 -12.63837 -12.41462 -12.16723 -11.89363 -11.74137 -11.29912 -11.23768 -11.18740 -11.00934 -10.78394 -10.60640 -10.31789 -10.14036 -9.92198 -9.71317 -9.11989 -8.77955 -8.47933 -8.40570 -7.93620 -7.65237 -5.96436 -3.91255 1.52532 1.53920 1.87402 2.44996 3.33332 3.41143 3.44088 3.94279 4.31994 4.50284 4.69236 4.92705 4.96204 4.99410 5.05063 5.10944 5.14337 5.25182 5.27648 5.36920 5.39030 5.58932 5.63581 5.66775 5.68973 5.75532 5.85625 5.91038 6.02382 6.13729 6.17876 6.22929 6.26532 6.50768 6.60934 6.62518 6.77455 7.09049 7.13843 7.16929 7.60994 7.76315 7.88296 8.63780 9.13326 9.66196 11.17252 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.011347 B = 0.006254 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.119201 B = 4476.268530 C = 6505.223871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.039 4.039 3 H 0.095 0.905 4 C -0.112 4.112 5 C 0.085 3.915 6 H 0.087 0.913 7 N -0.644 5.644 8 C 0.138 3.862 9 H 0.082 0.918 10 C 0.005 3.995 11 C -0.492 4.492 12 H 0.078 0.922 13 C 0.064 3.936 14 N -0.906 5.906 15 Si 0.872 3.128 16 H -0.279 1.279 17 H -0.290 1.290 18 H -0.268 1.268 19 C -0.095 4.095 20 C -0.122 4.122 21 C -0.118 4.118 22 C -0.134 4.134 23 C -0.119 4.119 24 C -0.116 4.116 25 C -0.092 4.092 26 S -0.313 6.313 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.336 0.664 33 H 0.019 0.981 34 H 0.014 0.986 35 H 0.260 0.740 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.089 0.911 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.709 -1.866 16.146 16.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.168 4.168 3 H 0.113 0.887 4 C -0.151 4.151 5 C -0.027 4.027 6 H 0.106 0.894 7 N -0.273 5.273 8 C 0.028 3.972 9 H 0.100 0.900 10 C -0.033 4.033 11 C -0.530 4.530 12 H 0.096 0.904 13 C -0.136 4.136 14 N -0.546 5.546 15 Si 0.700 3.300 16 H -0.205 1.205 17 H -0.216 1.216 18 H -0.193 1.193 19 C -0.097 4.097 20 C -0.141 4.141 21 C -0.136 4.136 22 C -0.152 4.152 23 C -0.137 4.137 24 C -0.135 4.135 25 C -0.242 4.242 26 S -0.087 6.087 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.158 0.842 33 H 0.037 0.963 34 H 0.032 0.968 35 H 0.070 0.930 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.139 0.861 41 H 0.108 0.892 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.186 -1.536 16.494 16.869 hybrid contribution 1.351 -1.285 -0.588 1.955 sum -1.835 -2.820 15.906 16.258 Atomic orbital electron populations 1.21668 0.92099 1.03022 1.02124 1.23972 0.98871 1.00567 0.93402 0.88660 1.22555 0.94689 1.00576 0.97239 1.22495 0.96872 0.96602 0.86735 0.89435 1.60646 1.10610 1.07734 1.48335 1.20815 0.85156 0.98031 0.93150 0.90000 1.19586 0.95869 0.96693 0.91171 1.20961 1.33094 1.10026 0.88923 0.90407 1.24968 0.95761 0.96253 0.96604 1.69898 1.46864 1.38160 0.99686 0.86911 0.80955 0.84317 0.77835 1.20498 1.21598 1.19289 1.21157 0.95821 0.95928 0.96822 1.20971 1.00591 0.94763 0.97761 1.21066 0.96377 0.99472 0.96653 1.21039 0.96860 0.96769 1.00542 1.21108 0.99716 0.95119 0.97759 1.21092 0.96024 1.00222 0.96156 1.24981 0.97728 1.02572 0.98954 1.87413 1.37952 1.60673 1.22706 0.92251 0.91196 0.91563 0.90178 0.88828 0.84248 0.96260 0.96810 0.92985 0.86232 0.86517 0.86685 0.86522 0.86108 0.89229 0.89238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 9.39 37.16 0.35 -0.96 16 2 C -0.04 -0.46 3.83 -25.60 -0.10 -0.56 16 3 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 4 C -0.11 -1.48 5.52 -25.16 -0.14 -1.62 16 5 C 0.08 1.22 2.89 -66.60 -0.19 1.03 16 6 H 0.09 1.33 7.43 -51.93 -0.39 0.94 16 7 N -0.64 -10.76 5.77 -99.78 -0.58 -11.34 16 8 C 0.14 2.49 2.17 -68.86 -0.15 2.35 16 9 H 0.08 1.53 7.29 -51.93 -0.38 1.15 16 10 C 0.00 0.10 3.70 -27.88 -0.10 0.00 16 11 C -0.49 -13.39 9.39 -34.44 -0.32 -13.72 16 12 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 13 C 0.06 1.83 5.47 -17.82 -0.10 1.74 16 14 N -0.91 -27.62 13.96 55.43 0.77 -26.85 16 15 Si 0.87 21.61 27.47 -169.99 -4.67 16.94 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 18 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 19 C -0.10 -1.49 3.85 -104.63 -0.40 -1.89 16 20 C -0.12 -1.75 7.94 -39.58 -0.31 -2.07 16 21 C -0.12 -1.50 10.05 -39.58 -0.40 -1.89 16 22 C -0.13 -1.63 10.05 -39.58 -0.40 -2.03 16 23 C -0.12 -1.51 10.05 -39.59 -0.40 -1.91 16 24 C -0.12 -1.68 9.67 -39.59 -0.38 -2.06 16 25 C -0.09 -1.22 5.65 37.82 0.21 -1.01 16 26 S -0.31 -4.18 22.73 -107.50 -2.44 -6.62 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.68 8.13 -51.93 -0.42 0.25 16 30 H 0.08 1.08 8.07 -51.93 -0.42 0.66 16 31 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.34 5.23 5.74 -39.29 -0.23 5.00 16 33 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 34 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.12 1.64 6.50 -52.48 -0.34 1.30 16 37 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 38 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 40 H 0.12 1.64 8.04 -52.48 -0.42 1.22 16 41 H 0.09 1.23 8.09 -51.93 -0.42 0.81 16 42 H 0.09 1.19 6.66 -51.93 -0.35 0.84 16 LS Contribution 344.04 15.07 5.18 5.18 Total: -1.00 -29.92 344.04 -11.24 -41.16 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.67 Total: 6.15 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: -2.83 Total: -24.62 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.20 Total: -38.18 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Atomic # 16 Polarization: -4.18 SS G_CDS: -2.44 Total: -6.62 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.92 -11.24 -41.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602579556.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.754 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.07 seconds