Wall clock time and date at job start Tue Mar 31 2020 06:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.76154 * 2 1 4 4 C 1.55129 * 111.03331 * 236.37260 * 2 1 3 5 5 C 1.53854 * 106.90096 * 199.62694 * 4 2 1 6 6 H 1.08992 * 109.61361 * 287.33929 * 5 4 2 7 7 N 1.46904 * 109.60908 * 167.00018 * 5 4 2 8 8 C 1.46904 * 110.99864 * 155.00370 * 7 5 4 9 9 H 1.09007 * 109.46973 * 324.99955 * 8 7 5 10 10 C 1.53001 * 109.47099 * 205.00150 * 8 7 5 11 11 C 1.50704 * 109.47061 * 64.99912 * 10 8 7 12 12 H 1.07999 * 119.99707 * 0.02562 * 11 10 8 13 13 C 1.37877 * 119.99778 * 180.02562 * 11 10 8 14 14 N 1.31511 * 120.00016 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 119.99898 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47279 * 90.00411 * 15 13 11 17 17 H 1.48502 * 109.46947 * 210.00103 * 15 13 11 18 18 H 1.48497 * 109.47635 * 329.99982 * 15 13 11 19 19 C 1.50697 * 109.47444 * 85.00061 * 8 7 5 20 20 C 1.38238 * 119.99760 * 39.72384 * 19 8 7 21 21 C 1.38243 * 119.99765 * 179.76544 * 20 19 8 22 22 C 1.38228 * 120.00019 * 0.51143 * 21 20 19 23 23 C 1.38239 * 119.99840 * 359.74707 * 22 21 20 24 24 C 1.38226 * 120.00135 * 359.97438 * 23 22 21 25 25 C 1.54275 * 108.92407 * 47.25941 * 5 4 2 26 26 S 1.83094 * 104.64909 * 332.04597 * 25 5 4 27 27 H 1.09005 * 109.47181 * 297.96505 * 1 2 3 28 28 H 1.09003 * 109.46843 * 57.96237 * 1 2 3 29 29 H 1.08997 * 109.47404 * 177.95658 * 1 2 3 30 30 H 1.08997 * 109.97817 * 318.99139 * 4 2 1 31 31 H 1.08999 * 109.97380 * 80.27046 * 4 2 1 32 32 H 1.00900 * 111.00466 * 278.95399 * 7 5 4 33 33 H 1.09001 * 109.47097 * 184.99858 * 10 8 7 34 34 H 1.08994 * 109.46936 * 305.00001 * 10 8 7 35 35 H 0.97000 * 120.00284 * 179.97438 * 14 13 11 36 36 H 1.08005 * 120.00175 * 0.02562 * 20 19 8 37 37 H 1.08005 * 119.99638 * 180.23103 * 21 20 19 38 38 H 1.07999 * 120.00221 * 179.71950 * 22 21 20 39 39 H 1.08007 * 119.99526 * 179.97438 * 23 22 21 40 40 H 1.08003 * 120.00069 * 179.97438 * 24 23 22 41 41 H 1.08997 * 110.40087 * 213.25110 * 25 5 4 42 42 H 1.09003 * 110.40451 * 90.84018 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9164 1.0192 0.0000 4 6 2.0868 -0.8018 -1.2056 5 6 3.5415 -1.1692 -0.8650 6 1 4.1678 -0.2794 -0.9278 7 7 4.0285 -2.1824 -1.8107 8 6 5.4923 -2.1355 -1.9249 9 1 5.8306 -1.1029 -1.8385 10 6 5.9162 -2.6990 -3.2827 11 6 5.4017 -1.8042 -4.3808 12 1 4.8300 -0.9216 -4.1347 13 6 5.6610 -2.1123 -5.6995 14 7 5.2125 -1.3312 -6.6577 15 14 6.6505 -3.6385 -6.1248 16 1 5.7318 -4.7928 -6.2946 17 1 7.3957 -3.4089 -7.3887 18 1 7.6108 -3.9272 -5.0296 19 6 6.1088 -2.9599 -0.8243 20 6 5.5359 -4.1637 -0.4588 21 6 6.1042 -4.9222 0.5476 22 6 7.2392 -4.4719 1.1955 23 6 7.8090 -3.2656 0.8335 24 6 7.2440 -2.5098 -0.1766 25 6 3.5915 -1.7376 0.5683 26 16 2.1831 -0.9461 1.4298 27 1 -0.3634 0.4819 0.9077 28 1 -0.3633 0.5452 -0.8712 29 1 -0.3634 -1.0270 -0.0366 30 1 1.4989 -1.7077 -1.3538 31 1 2.0588 -0.1880 -2.1059 32 1 3.7159 -3.1044 -1.5456 33 1 7.0040 -2.7468 -3.3327 34 1 5.5025 -3.6999 -3.4059 35 1 5.3952 -1.5477 -7.5854 36 1 4.6467 -4.5136 -0.9622 37 1 5.6587 -5.8645 0.8306 38 1 7.6806 -5.0624 1.9848 39 1 8.6955 -2.9136 1.3401 40 1 7.6890 -1.5671 -0.4591 41 1 4.5314 -1.4693 1.0508 42 1 3.4672 -2.8204 0.5523 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602579556.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:14 Heat of formation + Delta-G solvation = 1.690010 kcal Electronic energy + Delta-G solvation = -21329.049062 eV Core-core repulsion = 18398.719257 eV Total energy + Delta-G solvation = -2930.329805 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.75272 -38.53595 -36.25511 -34.62479 -33.09002 -31.78874 -30.97822 -29.89814 -27.60207 -26.19573 -23.80812 -23.29787 -22.93763 -21.64553 -21.12263 -18.97014 -17.90712 -17.62040 -16.73889 -16.52964 -16.15068 -15.87075 -15.68354 -15.32450 -14.78398 -14.59709 -14.48822 -14.23738 -14.12494 -13.86156 -13.71733 -13.46034 -13.20206 -12.93097 -12.88733 -12.49075 -12.28942 -12.20778 -12.12952 -11.88692 -11.76580 -11.65496 -11.64402 -11.22321 -10.92588 -10.68290 -9.80157 -9.55796 -9.22953 -8.72887 -8.18097 -6.16692 0.47140 0.51322 0.82407 1.36391 1.38069 1.38567 1.48396 2.41011 2.89301 3.07805 3.21607 3.56503 3.82399 3.87988 3.95202 3.96549 4.04479 4.15755 4.19184 4.30334 4.35988 4.43735 4.53385 4.63515 4.65718 4.73201 4.83686 4.86525 4.90835 5.04670 5.10891 5.11898 5.16248 5.22260 5.27201 5.39577 5.58491 5.63014 5.66936 5.73744 6.14242 6.20888 6.43521 6.54840 6.90368 7.43965 8.98821 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.011347 B = 0.006254 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.119201 B = 4476.268530 C = 6505.223871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.030 4.030 3 H 0.100 0.900 4 C -0.108 4.108 5 C 0.090 3.910 6 H 0.074 0.926 7 N -0.660 5.660 8 C 0.151 3.849 9 H 0.065 0.935 10 C 0.010 3.990 11 C -0.487 4.487 12 H 0.040 0.960 13 C 0.002 3.998 14 N -0.954 5.954 15 Si 0.938 3.062 16 H -0.271 1.271 17 H -0.289 1.289 18 H -0.253 1.253 19 C -0.111 4.111 20 C -0.131 4.131 21 C -0.119 4.119 22 C -0.129 4.129 23 C -0.120 4.120 24 C -0.131 4.131 25 C -0.077 4.077 26 S -0.325 6.325 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.343 0.657 33 H 0.014 0.986 34 H 0.014 0.986 35 H 0.261 0.739 36 H 0.120 0.880 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.119 0.881 41 H 0.085 0.915 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.164 -3.716 18.294 18.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.159 4.159 3 H 0.119 0.881 4 C -0.147 4.147 5 C -0.022 4.022 6 H 0.092 0.908 7 N -0.291 5.291 8 C 0.041 3.959 9 H 0.084 0.916 10 C -0.028 4.028 11 C -0.525 4.525 12 H 0.059 0.941 13 C -0.193 4.193 14 N -0.597 5.597 15 Si 0.764 3.236 16 H -0.197 1.197 17 H -0.215 1.215 18 H -0.177 1.177 19 C -0.113 4.113 20 C -0.150 4.150 21 C -0.136 4.136 22 C -0.147 4.147 23 C -0.137 4.137 24 C -0.150 4.150 25 C -0.227 4.227 26 S -0.100 6.100 27 H 0.086 0.914 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.165 0.835 33 H 0.033 0.967 34 H 0.033 0.967 35 H 0.070 0.930 36 H 0.138 0.862 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.159 0.841 40 H 0.137 0.863 41 H 0.104 0.896 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.642 -3.389 18.671 19.159 hybrid contribution 1.154 -0.643 -1.195 1.781 sum -1.488 -4.032 17.476 17.996 Atomic orbital electron populations 1.21669 0.90422 1.03318 1.03144 1.24013 1.00133 1.00167 0.91576 0.88142 1.22492 0.94092 1.00605 0.97504 1.22420 0.97072 0.95484 0.87217 0.90792 1.60543 1.10046 1.08665 1.49842 1.20372 0.86200 0.97338 0.92012 0.91633 1.19464 0.95202 0.95743 0.92391 1.21216 1.31682 1.09292 0.90355 0.94136 1.25835 0.97235 0.99592 0.96640 1.70056 1.49043 1.40477 1.00104 0.85838 0.79673 0.80350 0.77778 1.19691 1.21507 1.17730 1.20829 0.96852 0.96543 0.97057 1.21061 1.00848 0.94521 0.98534 1.21383 0.96421 1.00091 0.95747 1.21449 0.96224 0.96501 1.00546 1.21407 1.00290 0.95087 0.96963 1.21221 0.95945 1.00753 0.97042 1.24757 0.97611 1.02557 0.97749 1.87451 1.37893 1.61036 1.23586 0.91372 0.89959 0.91658 0.90186 0.90135 0.83532 0.96736 0.96749 0.93026 0.86167 0.84039 0.83671 0.84097 0.86252 0.89594 0.88931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 9.39 71.98 0.68 -1.68 16 2 C -0.03 -0.69 3.83 31.32 0.12 -0.57 16 3 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 4 C -0.11 -2.89 5.52 31.61 0.17 -2.72 16 5 C 0.09 2.62 2.89 45.63 0.13 2.76 16 6 H 0.07 2.35 7.43 -2.39 -0.02 2.33 16 7 N -0.66 -22.57 5.77 -469.61 -2.71 -25.28 16 8 C 0.15 5.56 2.17 44.17 0.10 5.65 16 9 H 0.07 2.57 7.29 -2.38 -0.02 2.56 16 10 C 0.01 0.45 3.70 29.85 0.11 0.56 16 11 C -0.49 -27.40 9.39 25.60 0.24 -27.16 16 12 H 0.04 2.52 7.99 -2.91 -0.02 2.50 16 13 C 0.00 0.14 5.47 84.66 0.46 0.60 16 14 N -0.95 -60.03 13.96 21.45 0.30 -59.73 16 15 Si 0.94 44.91 27.47 68.60 1.88 46.80 16 16 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 17 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 18 H -0.25 -11.41 6.54 99.48 0.65 -10.76 16 19 C -0.11 -3.38 3.85 -19.87 -0.08 -3.46 16 20 C -0.13 -3.53 7.94 22.27 0.18 -3.36 16 21 C -0.12 -2.64 10.05 22.27 0.22 -2.41 16 22 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 23 C -0.12 -2.70 10.05 22.27 0.22 -2.48 16 24 C -0.13 -3.63 9.67 22.27 0.22 -3.42 16 25 C -0.08 -1.99 5.65 72.41 0.41 -1.58 16 26 S -0.32 -8.32 22.73 -56.49 -1.28 -9.61 16 27 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 30 H 0.08 2.14 8.07 -2.39 -0.02 2.13 16 31 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.34 10.68 5.74 -89.69 -0.52 10.17 16 33 H 0.01 0.68 7.20 -2.39 -0.02 0.66 16 34 H 0.01 0.65 7.57 -2.39 -0.02 0.63 16 35 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 36 H 0.12 3.14 6.50 -2.91 -0.02 3.12 16 37 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 38 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 39 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 40 H 0.12 3.23 8.04 -2.91 -0.02 3.20 16 41 H 0.09 2.31 8.09 -2.39 -0.02 2.29 16 42 H 0.09 2.36 6.66 -2.39 -0.02 2.35 16 Total: -1.00 -65.43 344.04 2.02 -63.41 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 0.42 Total: 26.11 kcal Atomic # 6 Polarization: -45.11 SS G_CDS: 3.41 Total: -41.70 kcal Atomic # 7 Polarization: -82.60 SS G_CDS: -2.41 Total: -85.01 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.88 Total: 46.80 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.28 Total: -9.61 kcal Total: -65.43 2.02 -63.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602579556.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.105 kcal (2) G-P(sol) polarization free energy of solvation -65.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds