Wall clock time and date at job start Tue Mar 31 2020 06:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.29817 * 2 1 4 4 C 1.53705 * 110.34193 * 237.83325 * 2 1 3 5 5 C 1.52945 * 112.49008 * 243.84352 * 4 2 1 6 6 H 1.09000 * 109.60606 * 89.64183 * 5 4 2 7 7 N 1.46900 * 109.60659 * 209.96836 * 5 4 2 8 8 C 1.46901 * 110.99890 * 205.37788 * 7 5 4 9 9 H 1.09002 * 109.47401 * 34.99821 * 8 7 5 10 10 C 1.53000 * 109.46769 * 155.00113 * 8 7 5 11 11 C 1.50698 * 109.46984 * 294.99593 * 10 8 7 12 12 H 1.08008 * 120.00253 * 0.02562 * 11 10 8 13 13 C 1.37881 * 120.00032 * 180.02562 * 11 10 8 14 14 N 1.31516 * 119.99811 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99974 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47158 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47265 * 119.99969 * 15 13 11 18 18 H 1.48503 * 109.46681 * 239.99686 * 15 13 11 19 19 C 1.50699 * 109.47121 * 274.99849 * 8 7 5 20 20 C 1.38238 * 119.99878 * 319.73074 * 19 8 7 21 21 C 1.38238 * 119.99780 * 179.76940 * 20 19 8 22 22 C 1.38235 * 120.00068 * 0.48082 * 21 20 19 23 23 C 1.38233 * 119.99642 * 359.79129 * 22 21 20 24 24 C 1.38228 * 120.00161 * 140.00263 * 19 8 7 25 25 C 1.55158 * 108.81009 * 329.80759 * 5 4 2 26 26 S 1.83395 * 110.43087 * 122.23008 * 2 1 3 27 27 H 1.09001 * 109.46661 * 182.17385 * 1 2 3 28 28 H 1.08997 * 109.46979 * 302.16311 * 1 2 3 29 29 H 1.08996 * 109.47321 * 62.17021 * 1 2 3 30 30 H 1.08993 * 108.89478 * 123.05145 * 4 2 1 31 31 H 1.08996 * 108.77620 * 4.55592 * 4 2 1 32 32 H 1.00901 * 110.99385 * 329.33011 * 7 5 4 33 33 H 1.08990 * 109.47170 * 54.99770 * 10 8 7 34 34 H 1.09001 * 109.46952 * 174.99846 * 10 8 7 35 35 H 0.96997 * 119.99784 * 180.02562 * 14 13 11 36 36 H 1.08001 * 120.00036 * 359.97438 * 20 19 8 37 37 H 1.08004 * 119.99582 * 180.25187 * 21 20 19 38 38 H 1.07998 * 119.99993 * 179.77340 * 22 21 20 39 39 H 1.08009 * 119.99620 * 179.97438 * 23 22 21 40 40 H 1.08005 * 119.99944 * 359.97438 * 24 19 8 41 41 H 1.09003 * 111.13037 * 159.43699 * 25 5 4 42 42 H 1.08992 * 111.13121 * 283.61866 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9081 1.0223 0.0000 4 6 2.0643 -0.7673 -1.2200 5 6 2.8518 -2.0177 -0.8257 6 1 2.1749 -2.8692 -0.7555 7 7 3.8828 -2.2899 -1.8361 8 6 4.2391 -3.7149 -1.8541 9 1 3.3529 -4.3137 -1.6438 10 6 4.7898 -4.0855 -3.2326 11 6 3.7028 -3.9333 -4.2652 12 1 2.7178 -3.6046 -3.9681 13 6 3.9657 -4.2136 -5.5894 14 7 5.1653 -4.6132 -5.9513 15 14 2.6185 -4.0242 -6.8695 16 1 1.3701 -3.5640 -6.2099 17 1 3.0385 -3.0266 -7.8862 18 1 2.3759 -5.3320 -7.5299 19 6 5.2875 -3.9839 -0.8055 20 6 6.3138 -3.0795 -0.6063 21 6 7.2728 -3.3239 0.3589 22 6 7.2110 -4.4775 1.1180 23 6 6.1879 -5.3845 0.9150 24 6 5.2260 -5.1376 -0.0466 25 6 3.5240 -1.7723 0.5510 26 16 2.1702 -0.9166 1.4538 27 1 -0.3633 -1.0270 0.0390 28 1 -0.3633 0.5470 0.8699 29 1 -0.3634 0.4797 -0.9088 30 1 2.7143 -0.1077 -1.7948 31 1 1.2217 -1.0634 -1.8448 32 1 3.5851 -1.9800 -2.7490 33 1 5.6216 -3.4264 -3.4807 34 1 5.1364 -5.1189 -3.2196 35 1 5.3503 -4.8101 -6.8829 36 1 6.3646 -2.1804 -1.2025 37 1 8.0724 -2.6154 0.5172 38 1 7.9623 -4.6702 1.8696 39 1 6.1398 -6.2861 1.5079 40 1 4.4263 -5.8461 -0.2049 41 1 3.7824 -2.7139 1.0355 42 1 4.3991 -1.1302 0.4520 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602579557.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:26 Heat of formation + Delta-G solvation = 8.918132 kcal Electronic energy + Delta-G solvation = -21303.455439 eV Core-core repulsion = 18373.439068 eV Total energy + Delta-G solvation = -2930.016370 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.15806 -37.35045 -34.94128 -32.85484 -31.62109 -30.43136 -29.60749 -27.83957 -26.56191 -24.63587 -22.57550 -22.12555 -21.85323 -19.95478 -19.61467 -16.83856 -16.57469 -16.13853 -15.58562 -14.98405 -14.73217 -14.49107 -14.31717 -14.07283 -13.73881 -13.28029 -13.03763 -12.94693 -12.74672 -12.35232 -12.22776 -12.07719 -11.71859 -11.30338 -11.23476 -11.10185 -11.04492 -10.89260 -10.66668 -10.63440 -10.41723 -10.33428 -9.85641 -9.63153 -9.23263 -8.51704 -8.44619 -8.10016 -7.96776 -7.63469 -6.12104 -4.16851 1.81229 1.88009 1.96521 2.45064 3.22314 3.31000 3.32471 4.24614 4.35193 4.50831 4.66177 4.82865 4.96997 5.20831 5.26361 5.27475 5.31941 5.38398 5.43156 5.49054 5.59638 5.64838 5.69374 5.81601 5.87152 5.99662 6.03465 6.04278 6.08344 6.15812 6.26420 6.39867 6.51508 6.65832 6.89102 6.94669 7.13607 7.36551 7.48306 7.52583 7.84239 7.87787 8.04888 8.22623 8.88946 9.48161 10.98313 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.010149 B = 0.006546 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.344821 B = 4276.486084 C = 6615.851043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.032 4.032 3 H 0.093 0.907 4 C -0.133 4.133 5 C 0.087 3.913 6 H 0.055 0.945 7 N -0.670 5.670 8 C 0.127 3.873 9 H 0.043 0.957 10 C 0.028 3.972 11 C -0.528 4.528 12 H 0.053 0.947 13 C 0.063 3.937 14 N -0.887 5.887 15 Si 0.890 3.110 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.284 1.284 19 C -0.053 4.053 20 C -0.089 4.089 21 C -0.130 4.130 22 C -0.137 4.137 23 C -0.126 4.126 24 C -0.125 4.125 25 C -0.041 4.041 26 S -0.319 6.319 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.363 0.637 33 H 0.029 0.971 34 H 0.024 0.976 35 H 0.262 0.738 36 H 0.128 0.872 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.098 0.902 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.019 5.940 12.317 14.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.161 4.161 3 H 0.112 0.888 4 C -0.172 4.172 5 C -0.025 4.025 6 H 0.073 0.927 7 N -0.305 5.305 8 C 0.017 3.983 9 H 0.061 0.939 10 C -0.009 4.009 11 C -0.566 4.566 12 H 0.071 0.929 13 C -0.139 4.139 14 N -0.525 5.525 15 Si 0.718 3.282 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.210 1.210 19 C -0.053 4.053 20 C -0.107 4.107 21 C -0.148 4.148 22 C -0.155 4.155 23 C -0.144 4.144 24 C -0.143 4.143 25 C -0.190 4.190 26 S -0.093 6.093 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.186 0.814 33 H 0.047 0.953 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.145 0.855 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.117 0.883 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.753 6.044 13.703 15.227 hybrid contribution -0.981 -0.408 -2.349 2.578 sum -3.734 5.636 11.354 13.214 Atomic orbital electron populations 1.21828 0.92428 1.03045 1.02013 1.23517 0.98806 1.00638 0.93126 0.88824 1.22236 1.00655 0.96975 0.97288 1.22394 0.91631 0.96714 0.91766 0.92677 1.60532 1.40792 1.18612 1.10575 1.20744 0.94384 0.87065 0.96089 0.93904 1.19259 0.96796 0.97432 0.87392 1.21142 0.96867 1.46261 0.92312 0.92861 1.24977 0.95346 0.94985 0.98605 1.69970 1.20185 1.45112 1.17253 0.86577 0.82073 0.77841 0.81740 1.19821 1.20911 1.20994 1.20165 0.96446 0.93544 0.95181 1.21033 0.93200 0.99535 0.96928 1.21126 0.99111 0.97457 0.97071 1.20977 0.98756 0.95273 1.00470 1.20977 0.95465 0.99181 0.98821 1.21044 0.99445 0.97482 0.96346 1.24441 0.96919 1.02111 0.95505 1.87696 1.41693 1.59225 1.20653 0.91492 0.92235 0.91490 0.89880 0.90291 0.81419 0.95280 0.95783 0.92865 0.85453 0.86887 0.87097 0.86942 0.86722 0.88320 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.36 9.05 37.16 0.34 -1.03 16 2 C -0.03 -0.37 3.91 -26.37 -0.10 -0.48 16 3 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.13 -1.69 5.42 -26.39 -0.14 -1.83 16 5 C 0.09 1.29 2.87 -66.60 -0.19 1.10 16 6 H 0.06 0.89 7.42 -51.93 -0.39 0.50 16 7 N -0.67 -11.39 5.37 -99.79 -0.54 -11.92 16 8 C 0.13 2.43 2.19 -68.86 -0.15 2.28 16 9 H 0.04 0.85 7.29 -51.93 -0.38 0.48 16 10 C 0.03 0.68 4.55 -27.88 -0.13 0.56 16 11 C -0.53 -13.61 8.12 -34.44 -0.28 -13.89 16 12 H 0.05 1.33 7.49 -52.48 -0.39 0.93 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16 15 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 C -0.05 -0.92 3.47 -104.63 -0.36 -1.29 16 20 C -0.09 -1.47 8.89 -39.58 -0.35 -1.82 16 21 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 22 C -0.14 -1.91 10.05 -39.58 -0.40 -2.31 16 23 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 24 C -0.12 -2.04 9.67 -39.59 -0.38 -2.42 16 25 C -0.04 -0.59 5.88 38.30 0.23 -0.36 16 26 S -0.32 -4.42 22.67 -107.50 -2.44 -6.86 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.08 1.05 7.94 -51.93 -0.41 0.64 16 31 H 0.08 0.98 7.62 -51.93 -0.40 0.59 16 32 H 0.36 6.66 6.78 -39.29 -0.27 6.40 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.13 2.16 7.73 -52.49 -0.41 1.75 16 37 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 38 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.11 1.37 8.06 -52.48 -0.42 0.94 16 40 H 0.11 1.79 8.04 -52.48 -0.42 1.36 16 41 H 0.10 1.50 7.52 -51.93 -0.39 1.11 16 42 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 349.09 15.07 5.26 5.26 Total: -1.00 -27.50 349.09 -11.63 -39.13 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -6.81 Total: 7.98 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: -2.82 Total: -24.41 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.20 Total: -36.64 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: -4.42 SS G_CDS: -2.44 Total: -6.86 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.50 -11.63 -39.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602579557.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.047 kcal (2) G-P(sol) polarization free energy of solvation -27.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds