Wall clock time and date at job start Tue Mar 31 2020 06:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.29817 * 2 1 4 4 C 1.53705 * 110.34193 * 237.83325 * 2 1 3 5 5 C 1.52945 * 112.49008 * 243.84352 * 4 2 1 6 6 H 1.09000 * 109.60606 * 89.64183 * 5 4 2 7 7 N 1.46900 * 109.60659 * 209.96836 * 5 4 2 8 8 C 1.46901 * 110.99890 * 205.37788 * 7 5 4 9 9 H 1.09002 * 109.47401 * 34.99821 * 8 7 5 10 10 C 1.53000 * 109.46769 * 155.00113 * 8 7 5 11 11 C 1.50698 * 109.46984 * 294.99593 * 10 8 7 12 12 H 1.08008 * 120.00253 * 0.02562 * 11 10 8 13 13 C 1.37881 * 120.00032 * 180.02562 * 11 10 8 14 14 N 1.31516 * 119.99811 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99974 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47158 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47265 * 119.99969 * 15 13 11 18 18 H 1.48503 * 109.46681 * 239.99686 * 15 13 11 19 19 C 1.50699 * 109.47121 * 274.99849 * 8 7 5 20 20 C 1.38238 * 119.99878 * 319.73074 * 19 8 7 21 21 C 1.38238 * 119.99780 * 179.76940 * 20 19 8 22 22 C 1.38235 * 120.00068 * 0.48082 * 21 20 19 23 23 C 1.38233 * 119.99642 * 359.79129 * 22 21 20 24 24 C 1.38228 * 120.00161 * 140.00263 * 19 8 7 25 25 C 1.55158 * 108.81009 * 329.80759 * 5 4 2 26 26 S 1.83395 * 110.43087 * 122.23008 * 2 1 3 27 27 H 1.09001 * 109.46661 * 182.17385 * 1 2 3 28 28 H 1.08997 * 109.46979 * 302.16311 * 1 2 3 29 29 H 1.08996 * 109.47321 * 62.17021 * 1 2 3 30 30 H 1.08993 * 108.89478 * 123.05145 * 4 2 1 31 31 H 1.08996 * 108.77620 * 4.55592 * 4 2 1 32 32 H 1.00901 * 110.99385 * 329.33011 * 7 5 4 33 33 H 1.08990 * 109.47170 * 54.99770 * 10 8 7 34 34 H 1.09001 * 109.46952 * 174.99846 * 10 8 7 35 35 H 0.96997 * 119.99784 * 180.02562 * 14 13 11 36 36 H 1.08001 * 120.00036 * 359.97438 * 20 19 8 37 37 H 1.08004 * 119.99582 * 180.25187 * 21 20 19 38 38 H 1.07998 * 119.99993 * 179.77340 * 22 21 20 39 39 H 1.08009 * 119.99620 * 179.97438 * 23 22 21 40 40 H 1.08005 * 119.99944 * 359.97438 * 24 19 8 41 41 H 1.09003 * 111.13037 * 159.43699 * 25 5 4 42 42 H 1.08992 * 111.13121 * 283.61866 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9081 1.0223 0.0000 4 6 2.0643 -0.7673 -1.2200 5 6 2.8518 -2.0177 -0.8257 6 1 2.1749 -2.8692 -0.7555 7 7 3.8828 -2.2899 -1.8361 8 6 4.2391 -3.7149 -1.8541 9 1 3.3529 -4.3137 -1.6438 10 6 4.7898 -4.0855 -3.2326 11 6 3.7028 -3.9333 -4.2652 12 1 2.7178 -3.6046 -3.9681 13 6 3.9657 -4.2136 -5.5894 14 7 5.1653 -4.6132 -5.9513 15 14 2.6185 -4.0242 -6.8695 16 1 1.3701 -3.5640 -6.2099 17 1 3.0385 -3.0266 -7.8862 18 1 2.3759 -5.3320 -7.5299 19 6 5.2875 -3.9839 -0.8055 20 6 6.3138 -3.0795 -0.6063 21 6 7.2728 -3.3239 0.3589 22 6 7.2110 -4.4775 1.1180 23 6 6.1879 -5.3845 0.9150 24 6 5.2260 -5.1376 -0.0466 25 6 3.5240 -1.7723 0.5510 26 16 2.1702 -0.9166 1.4538 27 1 -0.3633 -1.0270 0.0390 28 1 -0.3633 0.5470 0.8699 29 1 -0.3634 0.4797 -0.9088 30 1 2.7143 -0.1077 -1.7948 31 1 1.2217 -1.0634 -1.8448 32 1 3.5851 -1.9800 -2.7490 33 1 5.6216 -3.4264 -3.4807 34 1 5.1364 -5.1189 -3.2196 35 1 5.3503 -4.8101 -6.8829 36 1 6.3646 -2.1804 -1.2025 37 1 8.0724 -2.6154 0.5172 38 1 7.9623 -4.6702 1.8696 39 1 6.1398 -6.2861 1.5079 40 1 4.4263 -5.8461 -0.2049 41 1 3.7824 -2.7139 1.0355 42 1 4.3991 -1.1302 0.4520 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602579557.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:25 Heat of formation + Delta-G solvation = -4.043416 kcal Electronic energy + Delta-G solvation = -21304.017493 eV Core-core repulsion = 18373.439068 eV Total energy + Delta-G solvation = -2930.578425 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.46422 -38.56480 -36.33576 -34.64220 -32.92009 -31.64272 -30.96703 -29.51132 -27.61343 -26.31974 -23.68329 -23.67960 -23.11216 -21.13151 -21.03789 -18.63345 -17.82572 -17.49344 -16.85494 -16.52327 -16.31619 -15.70771 -15.46458 -15.34540 -14.90481 -14.57369 -14.45440 -14.11358 -13.97209 -13.86667 -13.55903 -13.31619 -13.24098 -12.91798 -12.61979 -12.50628 -12.36315 -12.19875 -12.13217 -11.95062 -11.74284 -11.70516 -11.44629 -11.13628 -10.87853 -10.59813 -9.68361 -9.43119 -9.37465 -8.74471 -8.20135 -6.31796 0.58508 0.65678 0.89254 1.35110 1.39351 1.40995 1.51976 2.39245 3.00726 3.11163 3.28083 3.57984 3.82249 3.87554 4.03569 4.11520 4.19910 4.23771 4.30048 4.41673 4.44294 4.56518 4.59024 4.74665 4.78376 4.79067 4.81451 4.88397 4.91144 5.00754 5.05487 5.22245 5.26340 5.30553 5.42336 5.49717 5.68445 5.73605 5.80414 5.86123 6.15617 6.26354 6.32146 6.54599 6.83231 7.37643 8.91211 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.010149 B = 0.006546 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.344821 B = 4276.486084 C = 6615.851043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.022 4.022 3 H 0.108 0.892 4 C -0.129 4.129 5 C 0.090 3.910 6 H 0.041 0.959 7 N -0.665 5.665 8 C 0.143 3.857 9 H 0.031 0.969 10 C 0.041 3.959 11 C -0.532 4.532 12 H 0.062 0.938 13 C 0.007 3.993 14 N -0.929 5.929 15 Si 0.960 3.040 16 H -0.260 1.260 17 H -0.279 1.279 18 H -0.284 1.284 19 C -0.073 4.073 20 C -0.101 4.101 21 C -0.130 4.130 22 C -0.131 4.131 23 C -0.126 4.126 24 C -0.141 4.141 25 C -0.029 4.029 26 S -0.337 6.337 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.354 0.646 33 H 0.001 0.999 34 H -0.011 1.011 35 H 0.263 0.737 36 H 0.116 0.884 37 H 0.138 0.862 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.114 0.886 41 H 0.087 0.913 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.809 6.910 13.427 15.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.151 4.151 3 H 0.126 0.874 4 C -0.168 4.168 5 C -0.022 4.022 6 H 0.059 0.941 7 N -0.298 5.298 8 C 0.033 3.967 9 H 0.049 0.951 10 C 0.004 3.996 11 C -0.570 4.570 12 H 0.080 0.920 13 C -0.191 4.191 14 N -0.569 5.569 15 Si 0.785 3.215 16 H -0.184 1.184 17 H -0.205 1.205 18 H -0.211 1.211 19 C -0.074 4.074 20 C -0.120 4.120 21 C -0.148 4.148 22 C -0.149 4.149 23 C -0.143 4.143 24 C -0.160 4.160 25 C -0.178 4.178 26 S -0.111 6.111 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.175 0.825 33 H 0.019 0.981 34 H 0.007 0.993 35 H 0.072 0.928 36 H 0.135 0.865 37 H 0.156 0.844 38 H 0.163 0.837 39 H 0.158 0.842 40 H 0.132 0.868 41 H 0.106 0.894 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.555 7.022 14.839 16.797 hybrid contribution -0.688 -0.723 -2.625 2.809 sum -4.244 6.299 12.214 14.383 Atomic orbital electron populations 1.21827 0.90936 1.02924 1.03333 1.23624 0.99916 1.00597 0.90929 0.87386 1.22197 1.00613 0.96029 0.97954 1.22408 0.91011 0.97375 0.91397 0.94058 1.60538 1.41819 1.16959 1.10515 1.20368 0.94302 0.88059 0.93944 0.95139 1.19017 0.95685 0.94597 0.90325 1.21494 0.97431 1.45292 0.92822 0.92033 1.25866 0.97542 0.94728 1.00983 1.70109 1.22427 1.46595 1.17737 0.85478 0.79515 0.77631 0.78883 1.18369 1.20500 1.21055 1.20036 0.96739 0.94842 0.95762 1.21022 0.93889 0.99195 0.97871 1.21428 0.98924 0.98326 0.96128 1.21394 0.98865 0.94298 1.00370 1.21313 0.94702 1.00247 0.98078 1.21190 1.00434 0.97136 0.97212 1.24227 0.96991 1.01601 0.95006 1.87767 1.41592 1.59627 1.22152 0.92301 0.91458 0.89618 0.89537 0.89697 0.82464 0.98076 0.99312 0.92847 0.86547 0.84415 0.83726 0.84215 0.86827 0.89443 0.88887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 9.05 71.98 0.65 -1.69 16 2 C -0.02 -0.47 3.91 30.83 0.12 -0.35 16 3 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 4 C -0.13 -3.13 5.42 30.81 0.17 -2.96 16 5 C 0.09 2.67 2.87 45.64 0.13 2.80 16 6 H 0.04 1.35 7.42 -2.39 -0.02 1.33 16 7 N -0.66 -23.22 5.37 -469.61 -2.52 -25.74 16 8 C 0.14 5.74 2.19 44.17 0.10 5.83 16 9 H 0.03 1.28 7.29 -2.39 -0.02 1.26 16 10 C 0.04 2.08 4.55 29.85 0.14 2.22 16 11 C -0.53 -28.18 8.12 25.60 0.21 -27.97 16 12 H 0.06 3.09 7.49 -2.91 -0.02 3.07 16 13 C 0.01 0.40 5.46 84.66 0.46 0.87 16 14 N -0.93 -54.93 13.29 21.45 0.28 -54.65 16 15 Si 0.96 42.47 29.54 68.60 2.03 44.50 16 16 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 17 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 C -0.07 -2.64 3.47 -19.87 -0.07 -2.71 16 20 C -0.10 -3.40 8.89 22.27 0.20 -3.21 16 21 C -0.13 -3.62 10.05 22.27 0.22 -3.40 16 22 C -0.13 -3.33 10.05 22.27 0.22 -3.11 16 23 C -0.13 -3.43 10.05 22.27 0.22 -3.21 16 24 C -0.14 -4.66 9.67 22.27 0.22 -4.44 16 25 C -0.03 -0.84 5.88 72.72 0.43 -0.41 16 26 S -0.34 -8.99 22.67 -56.49 -1.28 -10.27 16 27 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 2.07 7.94 -2.39 -0.02 2.05 16 31 H 0.08 1.97 7.62 -2.39 -0.02 1.96 16 32 H 0.35 13.30 6.78 -89.69 -0.61 12.69 16 33 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 34 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 35 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 36 H 0.12 4.08 7.73 -2.91 -0.02 4.06 16 37 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 38 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 39 H 0.14 3.01 8.06 -2.91 -0.02 2.98 16 40 H 0.11 3.65 8.04 -2.91 -0.02 3.63 16 41 H 0.09 2.69 7.52 -2.39 -0.02 2.67 16 42 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -60.71 349.09 2.30 -58.40 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 0.38 Total: 29.49 kcal Atomic # 6 Polarization: -45.15 SS G_CDS: 3.42 Total: -41.73 kcal Atomic # 7 Polarization: -78.15 SS G_CDS: -2.24 Total: -80.39 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: -8.99 SS G_CDS: -1.28 Total: -10.27 kcal Total: -60.71 2.30 -58.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602579557.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.360 kcal (2) G-P(sol) polarization free energy of solvation -60.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds