Wall clock time and date at job start Tue Mar 31 2020 06:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47231 * 2 1 4 4 C 1.52995 * 109.47520 * 239.99668 * 2 1 3 5 5 C 1.50699 * 109.47023 * 64.99657 * 4 2 1 6 6 H 1.08002 * 120.00154 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99716 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99812 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00123 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.46990 * 90.00003 * 9 7 5 11 11 H 1.48506 * 109.46943 * 209.99861 * 9 7 5 12 12 H 1.48500 * 109.47295 * 329.99706 * 9 7 5 13 13 C 1.53007 * 109.47112 * 119.99423 * 2 1 3 14 14 N 1.46902 * 109.46841 * 295.00257 * 13 2 1 15 15 C 1.46990 * 110.99781 * 189.55949 * 14 13 2 16 16 C 1.51289 * 111.61677 * 29.98604 * 15 14 13 17 17 C 1.51727 * 115.86772 * 70.59559 * 16 15 14 18 18 S 1.82207 * 109.59886 * 291.50358 * 17 16 15 19 19 C 1.77624 * 101.03011 * 78.92885 * 18 17 16 20 20 C 1.38254 * 120.36793 * 114.13678 * 19 18 17 21 21 C 1.38576 * 119.14369 * 179.62016 * 20 19 18 22 22 C 1.38269 * 119.92922 * 359.91947 * 21 20 19 23 23 C 1.38269 * 120.70958 * 0.22782 * 22 21 20 24 24 C 1.38225 * 118.20608 * 294.04801 * 19 18 17 25 25 H 1.09000 * 109.46967 * 300.00249 * 1 2 3 26 26 H 1.08995 * 109.46963 * 60.00335 * 1 2 3 27 27 H 1.08994 * 109.46721 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47380 * 184.99980 * 4 2 1 29 29 H 1.09002 * 109.46819 * 305.00158 * 4 2 1 30 30 H 0.97005 * 120.00445 * 179.97438 * 8 7 5 31 31 H 1.08991 * 109.46801 * 55.00043 * 13 2 1 32 32 H 1.09001 * 109.46866 * 175.00485 * 13 2 1 33 33 H 1.09003 * 109.05653 * 150.53810 * 15 14 13 34 34 H 1.09003 * 109.05209 * 269.44473 * 15 14 13 35 35 H 1.08997 * 108.20308 * 192.25362 * 16 15 14 36 36 H 1.08997 * 108.20774 * 309.13816 * 16 15 14 37 37 H 1.09002 * 109.44705 * 51.53864 * 17 16 15 38 38 H 1.08993 * 109.45301 * 171.49072 * 17 16 15 39 39 H 1.08007 * 120.42869 * 359.64308 * 20 19 18 40 40 H 1.08003 * 120.03589 * 179.89893 * 21 20 19 41 41 H 1.08002 * 119.64468 * 180.20065 * 22 21 20 42 42 H 1.07997 * 120.15470 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6414 0.0569 -2.4765 6 1 1.0806 0.9744 -2.3757 7 6 1.9934 -0.4020 -3.7282 8 7 1.6459 0.2774 -4.7993 9 14 2.9639 -1.9885 -3.9025 10 1 2.0248 -3.1329 -4.0197 11 1 3.8130 -1.9183 -5.1189 12 1 3.8255 -2.1756 -2.7076 13 6 2.0400 -0.7212 1.2494 14 7 1.6513 0.0377 2.4457 15 6 2.3117 -0.4960 3.6455 16 6 3.6575 -1.1041 3.3172 17 6 4.7507 -0.1243 2.9335 18 16 4.3596 0.6266 1.3201 19 6 3.1559 1.8436 1.7945 20 6 3.4350 3.1913 1.6624 21 6 2.4744 4.1188 2.0329 22 6 1.2555 3.6904 2.5255 23 6 0.9823 2.3415 2.6585 24 6 1.9438 1.4041 2.2927 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0276 0.0005 28 1 3.1264 -0.7995 -1.2055 29 1 1.6055 -1.7198 -1.2950 30 1 1.8939 -0.0451 -5.6799 31 1 1.6054 -1.7196 1.2953 32 1 3.1264 -0.7993 1.2057 33 1 2.4520 0.3119 4.3637 34 1 1.6754 -1.2604 4.0917 35 1 3.9965 -1.6696 4.1851 36 1 3.5236 -1.8013 2.4902 37 1 4.8197 0.6571 3.6903 38 1 5.7029 -0.6506 2.8672 39 1 4.3892 3.5169 1.2751 40 1 2.6777 5.1752 1.9373 41 1 0.5090 4.4173 2.8098 42 1 0.0271 2.0169 3.0439 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602668634.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:44 Heat of formation + Delta-G solvation = 48.543604 kcal Electronic energy + Delta-G solvation = -22230.529356 eV Core-core repulsion = 19302.231275 eV Total energy + Delta-G solvation = -2928.298081 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.31834 -37.46044 -34.95730 -32.83745 -31.81284 -30.89112 -29.50858 -27.70051 -26.57850 -25.13399 -22.71537 -22.55308 -22.10235 -20.01659 -19.04392 -17.60301 -16.86137 -16.14601 -15.82132 -15.44892 -14.85751 -14.81534 -14.28019 -14.07981 -13.79669 -13.50804 -13.11655 -12.74499 -12.48003 -12.44787 -12.14947 -12.03593 -11.70675 -11.55570 -11.45268 -11.07754 -10.87892 -10.87494 -10.63155 -10.28734 -10.01280 -9.65655 -9.61343 -9.32252 -8.96691 -8.84377 -8.76845 -8.41449 -8.18552 -6.87192 -5.91833 -3.87041 1.08075 1.43045 1.82539 2.58350 3.38458 3.45281 3.50786 3.77602 4.01516 4.48972 4.56345 4.78913 4.99913 5.05567 5.10886 5.22456 5.33600 5.38763 5.42701 5.53831 5.56882 5.65087 5.74967 5.85233 5.95568 6.00527 6.06015 6.24651 6.31650 6.39534 6.47595 6.51470 6.66516 6.71761 6.83887 6.95715 7.14410 7.23380 7.29878 7.48244 7.55596 7.67547 7.95336 8.69799 9.14732 9.71977 11.21978 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016489 B = 0.006284 C = 0.005676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.671748 B = 4454.685342 C = 4932.275286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.069 4.069 3 H 0.062 0.938 4 C -0.003 4.003 5 C -0.505 4.505 6 H 0.071 0.929 7 C 0.064 3.936 8 N -0.908 5.908 9 Si 0.875 3.125 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.264 1.264 13 C 0.010 3.990 14 N -0.489 5.489 15 C 0.057 3.943 16 C -0.161 4.161 17 C -0.105 4.105 18 S -0.128 6.128 19 C -0.132 4.132 20 C -0.066 4.066 21 C -0.134 4.134 22 C -0.097 4.097 23 C -0.108 4.108 24 C 0.140 3.860 25 H 0.038 0.962 26 H 0.057 0.943 27 H 0.038 0.962 28 H 0.017 0.983 29 H 0.007 0.993 30 H 0.260 0.740 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.131 0.869 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.000 2.319 20.483 20.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.088 4.088 3 H 0.080 0.920 4 C -0.041 4.041 5 C -0.543 4.543 6 H 0.089 0.911 7 C -0.136 4.136 8 N -0.548 5.548 9 Si 0.703 3.297 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.189 1.189 13 C -0.118 4.118 14 N -0.209 5.209 15 C -0.070 4.070 16 C -0.202 4.202 17 C -0.253 4.253 18 S 0.110 5.890 19 C -0.245 4.245 20 C -0.088 4.088 21 C -0.154 4.154 22 C -0.117 4.117 23 C -0.128 4.128 24 C 0.042 3.958 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.036 0.964 29 H 0.025 0.975 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.126 0.874 39 H 0.149 0.851 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.020 1.914 19.312 19.819 hybrid contribution 0.709 -0.415 0.613 1.025 sum 4.729 1.499 19.926 20.534 Atomic orbital electron populations 1.21646 0.96054 1.00387 1.00317 1.21016 0.95354 0.99323 0.93088 0.92020 1.19539 0.96007 0.95423 0.93162 1.21144 1.34704 1.09333 0.89165 0.91141 1.25006 0.95748 0.96872 0.95959 1.69922 1.47598 1.39388 0.97912 0.86843 0.80751 0.84525 0.77608 1.20476 1.21619 1.18898 1.23616 1.03772 0.96428 0.87993 1.60820 1.56063 0.99233 1.04776 1.21887 0.92759 0.99834 0.92478 1.21799 0.95169 0.99775 1.03431 1.23480 1.02035 1.01683 0.98069 1.86493 1.50500 1.40673 1.11316 1.22122 0.97234 0.96870 1.08284 1.21236 0.99565 0.91174 0.96788 1.21202 0.93988 0.99385 1.00810 1.21184 0.96773 0.95614 0.98091 1.21173 0.98757 0.91807 1.01093 1.18997 0.90690 0.90771 0.95349 0.94271 0.92438 0.94243 0.96434 0.97464 0.93008 0.91613 0.88577 0.91813 0.89665 0.90878 0.89522 0.89898 0.87434 0.85136 0.85687 0.85808 0.85126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 8.87 37.16 0.33 -2.27 16 2 C -0.07 -1.46 1.51 -90.62 -0.14 -1.59 16 3 H 0.06 1.41 5.58 -51.93 -0.29 1.12 16 4 C 0.00 -0.08 3.52 -27.89 -0.10 -0.18 16 5 C -0.51 -14.86 8.96 -34.44 -0.31 -15.17 16 6 H 0.07 2.25 7.30 -52.49 -0.38 1.86 16 7 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 8 N -0.91 -28.87 13.96 55.43 0.77 -28.10 16 9 Si 0.88 22.56 27.47 -169.99 -4.67 17.89 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 12 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 13 C 0.01 0.17 2.87 -3.82 -0.01 0.16 16 14 N -0.49 -7.28 4.37 -171.89 -0.75 -8.04 16 15 C 0.06 0.66 5.93 -4.64 -0.03 0.64 16 16 C -0.16 -1.74 5.02 -28.24 -0.14 -1.88 16 17 C -0.10 -1.19 6.21 36.51 0.23 -0.96 16 18 S -0.13 -2.01 17.65 -107.50 -1.90 -3.91 16 19 C -0.13 -2.05 4.21 -39.58 -0.17 -2.22 16 20 C -0.07 -0.94 9.85 -39.45 -0.39 -1.32 16 21 C -0.13 -1.65 10.07 -39.44 -0.40 -2.05 16 22 C -0.10 -1.18 10.01 -39.56 -0.40 -1.58 16 23 C -0.11 -1.47 9.87 -39.22 -0.39 -1.86 16 24 C 0.14 2.12 2.85 -83.50 -0.24 1.88 16 25 H 0.04 0.72 7.45 -51.93 -0.39 0.33 16 26 H 0.06 1.31 6.95 -51.93 -0.36 0.95 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 29 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 16 30 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.10 1.65 2.49 -20.57 -0.05 1.60 16 33 H 0.06 0.71 7.68 -51.93 -0.40 0.31 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 1.06 5.90 -51.93 -0.31 0.76 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.13 1.68 8.06 -52.48 -0.42 1.26 16 40 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 41 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 42 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 326.92 15.07 4.93 4.93 Total: -1.00 -32.48 326.92 -10.19 -42.68 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -6.34 Total: 1.13 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: -2.24 Total: -26.58 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.02 Total: -36.13 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.67 Total: 17.89 kcal Atomic # 16 Polarization: -2.01 SS G_CDS: -1.90 Total: -3.91 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.48 -10.19 -42.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602668634.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.222 kcal (2) G-P(sol) polarization free energy of solvation -32.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds