Wall clock time and date at job start Tue Mar 31 2020 06:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47231 * 2 1 4 4 C 1.52995 * 109.47520 * 239.99668 * 2 1 3 5 5 C 1.50699 * 109.47023 * 64.99657 * 4 2 1 6 6 H 1.08002 * 120.00154 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99716 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99812 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00123 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.46990 * 90.00003 * 9 7 5 11 11 H 1.48506 * 109.46943 * 209.99861 * 9 7 5 12 12 H 1.48500 * 109.47295 * 329.99706 * 9 7 5 13 13 C 1.53007 * 109.47112 * 119.99423 * 2 1 3 14 14 N 1.46902 * 109.46841 * 295.00257 * 13 2 1 15 15 C 1.46990 * 110.99781 * 189.55949 * 14 13 2 16 16 C 1.51289 * 111.61677 * 29.98604 * 15 14 13 17 17 C 1.51727 * 115.86772 * 70.59559 * 16 15 14 18 18 S 1.82207 * 109.59886 * 291.50358 * 17 16 15 19 19 C 1.77624 * 101.03011 * 78.92885 * 18 17 16 20 20 C 1.38254 * 120.36793 * 114.13678 * 19 18 17 21 21 C 1.38576 * 119.14369 * 179.62016 * 20 19 18 22 22 C 1.38269 * 119.92922 * 359.91947 * 21 20 19 23 23 C 1.38269 * 120.70958 * 0.22782 * 22 21 20 24 24 C 1.38225 * 118.20608 * 294.04801 * 19 18 17 25 25 H 1.09000 * 109.46967 * 300.00249 * 1 2 3 26 26 H 1.08995 * 109.46963 * 60.00335 * 1 2 3 27 27 H 1.08994 * 109.46721 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47380 * 184.99980 * 4 2 1 29 29 H 1.09002 * 109.46819 * 305.00158 * 4 2 1 30 30 H 0.97005 * 120.00445 * 179.97438 * 8 7 5 31 31 H 1.08991 * 109.46801 * 55.00043 * 13 2 1 32 32 H 1.09001 * 109.46866 * 175.00485 * 13 2 1 33 33 H 1.09003 * 109.05653 * 150.53810 * 15 14 13 34 34 H 1.09003 * 109.05209 * 269.44473 * 15 14 13 35 35 H 1.08997 * 108.20308 * 192.25362 * 16 15 14 36 36 H 1.08997 * 108.20774 * 309.13816 * 16 15 14 37 37 H 1.09002 * 109.44705 * 51.53864 * 17 16 15 38 38 H 1.08993 * 109.45301 * 171.49072 * 17 16 15 39 39 H 1.08007 * 120.42869 * 359.64308 * 20 19 18 40 40 H 1.08003 * 120.03589 * 179.89893 * 21 20 19 41 41 H 1.08002 * 119.64468 * 180.20065 * 22 21 20 42 42 H 1.07997 * 120.15470 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6414 0.0569 -2.4765 6 1 1.0806 0.9744 -2.3757 7 6 1.9934 -0.4020 -3.7282 8 7 1.6459 0.2774 -4.7993 9 14 2.9639 -1.9885 -3.9025 10 1 2.0248 -3.1329 -4.0197 11 1 3.8130 -1.9183 -5.1189 12 1 3.8255 -2.1756 -2.7076 13 6 2.0400 -0.7212 1.2494 14 7 1.6513 0.0377 2.4457 15 6 2.3117 -0.4960 3.6455 16 6 3.6575 -1.1041 3.3172 17 6 4.7507 -0.1243 2.9335 18 16 4.3596 0.6266 1.3201 19 6 3.1559 1.8436 1.7945 20 6 3.4350 3.1913 1.6624 21 6 2.4744 4.1188 2.0329 22 6 1.2555 3.6904 2.5255 23 6 0.9823 2.3415 2.6585 24 6 1.9438 1.4041 2.2927 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0276 0.0005 28 1 3.1264 -0.7995 -1.2055 29 1 1.6055 -1.7198 -1.2950 30 1 1.8939 -0.0451 -5.6799 31 1 1.6054 -1.7196 1.2953 32 1 3.1264 -0.7993 1.2057 33 1 2.4520 0.3119 4.3637 34 1 1.6754 -1.2604 4.0917 35 1 3.9965 -1.6696 4.1851 36 1 3.5236 -1.8013 2.4902 37 1 4.8197 0.6571 3.6903 38 1 5.7029 -0.6506 2.8672 39 1 4.3892 3.5169 1.2751 40 1 2.6777 5.1752 1.9373 41 1 0.5090 4.4173 2.8098 42 1 0.0271 2.0169 3.0439 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602668634.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:43 Heat of formation + Delta-G solvation = 29.559635 kcal Electronic energy + Delta-G solvation = -22231.352563 eV Core-core repulsion = 19302.231275 eV Total energy + Delta-G solvation = -2929.121288 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.41974 -38.53257 -36.60262 -34.44031 -33.45951 -31.91713 -30.58295 -29.57271 -27.95154 -26.34326 -24.45976 -23.69925 -23.11949 -21.31520 -20.53950 -18.96843 -18.65755 -17.43858 -16.92314 -16.73255 -16.15273 -15.87188 -15.76868 -15.53257 -14.99377 -14.86527 -14.50630 -14.15563 -14.03543 -13.62730 -13.47990 -13.38556 -13.01831 -12.97532 -12.78986 -12.54793 -12.44500 -12.21976 -12.01472 -11.75995 -11.64490 -11.42260 -11.20426 -11.10718 -10.90008 -10.72465 -9.97308 -9.84208 -9.26064 -8.25396 -8.08850 -6.26367 0.07445 0.39071 0.74843 1.33483 1.35930 1.48581 1.57555 2.37971 2.75546 2.92488 3.10070 3.63345 3.91974 3.98968 4.09224 4.17187 4.30638 4.36008 4.37776 4.44062 4.52424 4.58619 4.63297 4.65083 4.79735 4.92916 4.95340 4.97717 5.02020 5.06890 5.13695 5.23638 5.33295 5.37723 5.41680 5.44103 5.51959 5.59222 5.74962 5.78578 5.86647 6.06927 6.36602 6.41624 6.79892 7.36336 8.91849 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016489 B = 0.006284 C = 0.005676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.671748 B = 4454.685342 C = 4932.275286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.060 4.060 3 H 0.040 0.960 4 C 0.004 3.996 5 C -0.512 4.512 6 H 0.027 0.973 7 C 0.002 3.998 8 N -0.955 5.955 9 Si 0.944 3.056 10 H -0.265 1.265 11 H -0.285 1.285 12 H -0.248 1.248 13 C 0.020 3.980 14 N -0.491 5.491 15 C 0.055 3.945 16 C -0.159 4.159 17 C -0.084 4.084 18 S -0.202 6.202 19 C -0.141 4.141 20 C -0.087 4.087 21 C -0.133 4.133 22 C -0.096 4.096 23 C -0.118 4.118 24 C 0.121 3.879 25 H 0.059 0.941 26 H 0.021 0.979 27 H 0.046 0.954 28 H 0.015 0.985 29 H 0.012 0.988 30 H 0.264 0.736 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.126 0.874 39 H 0.133 0.867 40 H 0.152 0.848 41 H 0.155 0.845 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.557 1.112 23.103 23.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.079 4.079 3 H 0.058 0.942 4 C -0.034 4.034 5 C -0.550 4.550 6 H 0.045 0.955 7 C -0.194 4.194 8 N -0.597 5.597 9 Si 0.768 3.232 10 H -0.190 1.190 11 H -0.211 1.211 12 H -0.172 1.172 13 C -0.108 4.108 14 N -0.211 5.211 15 C -0.071 4.071 16 C -0.199 4.199 17 C -0.231 4.231 18 S 0.036 5.964 19 C -0.255 4.255 20 C -0.108 4.108 21 C -0.153 4.153 22 C -0.115 4.115 23 C -0.139 4.139 24 C 0.023 3.977 25 H 0.078 0.922 26 H 0.041 0.959 27 H 0.065 0.935 28 H 0.033 0.967 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.119 0.881 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.091 0.909 37 H 0.111 0.889 38 H 0.144 0.856 39 H 0.151 0.849 40 H 0.170 0.830 41 H 0.173 0.827 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.574 0.712 21.962 22.444 hybrid contribution 0.495 0.101 -0.162 0.531 sum 5.069 0.812 21.800 22.396 Atomic orbital electron populations 1.21544 0.95862 1.00545 0.99536 1.20820 0.95347 0.98148 0.93557 0.94185 1.19435 0.95740 0.95203 0.93025 1.21407 1.33909 1.08292 0.91373 0.95516 1.25967 0.97006 1.00945 0.95451 1.70079 1.49303 1.41659 0.98627 0.85737 0.79494 0.79740 0.78224 1.19038 1.21061 1.17167 1.23372 1.03994 0.96077 0.87367 1.60795 1.56615 0.99042 1.04634 1.22032 0.93414 1.00528 0.91132 1.21766 0.94566 0.99293 1.04253 1.23542 1.03047 1.01732 0.94822 1.86598 1.51356 1.42189 1.16286 1.22178 0.97301 0.97045 1.08956 1.21464 1.00465 0.91337 0.97555 1.21558 0.93580 1.00483 0.99656 1.21564 0.97257 0.95728 0.96955 1.21427 0.98876 0.92365 1.01183 1.19168 0.91001 0.91174 0.96359 0.92188 0.95944 0.93513 0.96718 0.96978 0.92765 0.91257 0.88068 0.91008 0.87986 0.87410 0.90918 0.88928 0.85619 0.84907 0.83020 0.82721 0.84025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.88 8.87 71.98 0.64 -4.24 16 2 C -0.06 -2.55 1.51 -10.79 -0.02 -2.57 16 3 H 0.04 1.89 5.58 -2.39 -0.01 1.87 16 4 C 0.00 0.20 3.52 29.85 0.10 0.30 16 5 C -0.51 -31.18 8.96 25.60 0.23 -30.95 16 6 H 0.03 1.81 7.30 -2.91 -0.02 1.79 16 7 C 0.00 0.12 5.47 84.66 0.46 0.59 16 8 N -0.95 -62.59 13.96 21.45 0.30 -62.29 16 9 Si 0.94 46.69 27.47 68.60 1.88 48.57 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.28 -13.76 7.11 99.48 0.71 -13.06 16 12 H -0.25 -11.52 6.54 99.48 0.65 -10.87 16 13 C 0.02 0.68 2.87 86.31 0.25 0.93 16 14 N -0.49 -13.78 4.37 -697.73 -3.05 -16.83 16 15 C 0.05 1.11 5.93 85.73 0.51 1.62 16 16 C -0.16 -2.92 5.02 29.62 0.15 -2.78 16 17 C -0.08 -1.71 6.21 71.56 0.44 -1.27 16 18 S -0.20 -6.32 17.65 -56.49 -1.00 -7.32 16 19 C -0.14 -4.38 4.21 22.27 0.09 -4.29 16 20 C -0.09 -2.45 9.85 22.35 0.22 -2.23 16 21 C -0.13 -3.10 10.07 22.36 0.23 -2.87 16 22 C -0.10 -2.14 10.01 22.28 0.22 -1.92 16 23 C -0.12 -3.04 9.87 22.50 0.22 -2.82 16 24 C 0.12 3.54 2.85 37.96 0.11 3.65 16 25 H 0.06 2.20 7.45 -2.39 -0.02 2.18 16 26 H 0.02 1.04 6.95 -2.39 -0.02 1.02 16 27 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.01 0.74 7.20 -2.39 -0.02 0.72 16 29 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 30 H 0.26 16.12 8.31 -92.70 -0.77 15.35 16 31 H 0.07 2.25 8.14 -2.39 -0.02 2.24 16 32 H 0.10 3.38 2.49 -22.33 -0.06 3.33 16 33 H 0.07 1.37 7.68 -2.39 -0.02 1.35 16 34 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.07 1.59 5.90 -2.39 -0.01 1.58 16 37 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 40 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 41 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 42 H 0.14 3.24 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -73.05 326.92 2.89 -70.16 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.89 Total: 16.54 kcal Atomic # 6 Polarization: -52.70 SS G_CDS: 3.86 Total: -48.84 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -2.75 Total: -79.12 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 1.88 Total: 48.57 kcal Atomic # 16 Polarization: -6.32 SS G_CDS: -1.00 Total: -7.32 kcal Total: -73.05 2.89 -70.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602668634.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.723 kcal (2) G-P(sol) polarization free energy of solvation -73.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds