Wall clock time and date at job start Tue Mar 31 2020 06:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46808 * 2 1 4 4 C 1.52995 * 109.46946 * 239.99206 * 2 1 3 5 5 C 1.50698 * 109.47053 * 65.00433 * 4 2 1 6 6 H 1.08002 * 120.00089 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99994 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99978 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00077 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47095 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47130 * 120.00317 * 9 7 5 12 12 H 1.48504 * 109.46908 * 240.00265 * 9 7 5 13 13 C 1.53007 * 109.47045 * 119.99123 * 2 1 3 14 14 N 1.46894 * 109.47263 * 295.00463 * 13 2 1 15 15 C 1.46895 * 111.00108 * 179.97438 * 14 13 2 16 16 C 1.53004 * 109.47257 * 179.97438 * 15 14 13 17 17 H 1.08993 * 109.27425 * 55.45766 * 16 15 14 18 18 C 1.54150 * 109.28533 * 295.99479 * 16 15 14 19 19 S 1.83287 * 101.07651 * 211.31412 * 18 16 15 20 20 C 1.77438 * 96.62327 * 24.79713 * 19 18 16 21 21 C 1.38825 * 130.56461 * 164.73122 * 20 19 18 22 22 C 1.38028 * 120.15953 * 180.60273 * 21 20 19 23 23 C 1.38322 * 119.29320 * 0.02588 * 22 21 20 24 24 C 1.37704 * 120.54128 * 359.86105 * 23 22 21 25 25 C 1.38879 * 108.28845 * 345.00287 * 20 19 18 26 26 H 1.08995 * 109.47132 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47042 * 300.00514 * 1 2 3 28 28 H 1.09000 * 109.47196 * 60.00480 * 1 2 3 29 29 H 1.09003 * 109.46674 * 184.99827 * 4 2 1 30 30 H 1.09000 * 109.47424 * 304.99939 * 4 2 1 31 31 H 0.97001 * 119.99993 * 179.97438 * 8 7 5 32 32 H 1.08991 * 109.47078 * 174.99826 * 13 2 1 33 33 H 1.09002 * 109.46796 * 54.99933 * 13 2 1 34 34 H 1.00899 * 111.00552 * 56.04053 * 14 13 2 35 35 H 1.09004 * 109.47241 * 59.99423 * 15 14 13 36 36 H 1.09001 * 109.47255 * 299.99511 * 15 14 13 37 37 H 1.09008 * 111.09932 * 329.25153 * 18 16 15 38 38 H 1.08991 * 111.09890 * 93.30903 * 18 16 15 39 39 H 1.08001 * 119.91771 * 0.61832 * 21 20 19 40 40 H 1.07997 * 120.34923 * 180.02562 * 22 21 20 41 41 H 1.07994 * 119.72799 * 179.84627 * 23 22 21 42 42 H 1.08003 * 119.47425 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6414 0.0568 -2.4765 6 1 1.0801 0.9740 -2.3758 7 6 1.9933 -0.4021 -3.7281 8 7 2.6763 -1.5192 -3.8509 9 14 1.4986 0.5621 -5.2497 10 1 0.7413 1.7733 -4.8436 11 1 2.7164 0.9675 -5.9964 12 1 0.6451 -0.2877 -6.1184 13 6 2.0401 -0.7211 1.2494 14 7 1.6514 0.0376 2.4457 15 6 2.1247 -0.6267 3.6673 16 6 1.7023 0.1915 4.8892 17 1 0.6222 0.3364 4.8694 18 6 2.3995 1.5657 4.8476 19 16 2.5855 1.9205 6.6361 20 6 2.5599 0.2329 7.1833 21 6 2.9287 -0.3279 8.3986 22 6 2.8306 -1.6910 8.5916 23 6 2.3624 -2.4883 7.5627 24 6 1.9944 -1.9317 6.3581 25 6 2.0820 -0.5550 6.1443 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.1263 -0.7996 -1.2054 30 1 1.6054 -1.7200 -1.2949 31 1 2.9236 -1.8423 -4.7315 32 1 3.1263 -0.7993 1.2058 33 1 1.6054 -1.7196 1.2954 34 1 0.6528 0.1796 2.4753 35 1 3.2116 -0.7047 3.6407 36 1 1.6903 -1.6245 3.7299 37 1 3.3711 1.4981 4.3580 38 1 1.7692 2.3109 4.3623 39 1 3.2931 0.3041 9.1949 40 1 3.1163 -2.1304 9.5358 41 1 2.2851 -3.5560 7.7052 42 1 1.6315 -2.5704 5.5664 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602672121.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:08 Heat of formation + Delta-G solvation = 5.250521 kcal Electronic energy + Delta-G solvation = -20094.589643 eV Core-core repulsion = 17164.414233 eV Total energy + Delta-G solvation = -2930.175410 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -39.82964 -37.40673 -35.54314 -33.25650 -31.76612 -31.13217 -29.60385 -27.20477 -26.48491 -24.83849 -23.27161 -22.77948 -21.98225 -20.66966 -18.97347 -17.98965 -16.51404 -16.07506 -15.81301 -15.37072 -15.30539 -14.97366 -14.60084 -14.22395 -13.75921 -13.52977 -13.16943 -13.16018 -12.75933 -12.53396 -12.36547 -12.21802 -11.85755 -11.63318 -11.44412 -11.41692 -11.09885 -10.89565 -10.76689 -10.36282 -10.33739 -10.21880 -9.90219 -9.75106 -9.19881 -9.08101 -8.96483 -8.34968 -8.25518 -7.62685 -5.99326 -4.00502 0.88399 1.03413 1.42809 2.08848 3.31027 3.36304 3.38796 3.42652 4.08566 4.17276 4.46632 4.61592 4.68582 4.70086 4.80567 5.05053 5.07200 5.16720 5.34932 5.36684 5.45093 5.50125 5.59563 5.71649 5.73206 5.75388 5.86663 5.99765 6.01587 6.06668 6.19794 6.21131 6.41681 6.51663 6.58346 6.87811 7.07467 7.13512 7.26743 7.54472 7.67991 7.83276 8.00836 8.44457 9.06129 9.63155 11.12244 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.032266 B = 0.002619 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.570269 B =10688.031770 C =11197.843230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.066 0.934 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.065 3.935 14 N -0.690 5.690 15 C 0.069 3.931 16 C -0.052 4.052 17 H 0.097 0.903 18 C -0.056 4.056 19 S -0.168 6.168 20 C -0.074 4.074 21 C -0.091 4.091 22 C -0.105 4.105 23 C -0.121 4.121 24 C -0.092 4.092 25 C -0.097 4.097 26 H 0.040 0.960 27 H 0.031 0.969 28 H 0.063 0.937 29 H 0.015 0.985 30 H 0.014 0.986 31 H 0.259 0.741 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.338 0.662 35 H 0.076 0.924 36 H 0.034 0.966 37 H 0.104 0.896 38 H 0.119 0.881 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.383 0.435 24.552 24.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.321 5.321 15 C -0.062 4.062 16 C -0.072 4.072 17 H 0.115 0.885 18 C -0.204 4.204 19 S 0.075 5.925 20 C -0.186 4.186 21 C -0.115 4.115 22 C -0.125 4.125 23 C -0.141 4.141 24 C -0.112 4.112 25 C -0.103 4.103 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.082 0.918 29 H 0.033 0.967 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.157 0.843 35 H 0.094 0.906 36 H 0.052 0.948 37 H 0.122 0.878 38 H 0.137 0.863 39 H 0.144 0.856 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.654 1.999 24.932 25.021 hybrid contribution -0.924 -1.564 -1.471 2.338 sum -1.578 0.434 23.461 23.518 Atomic orbital electron populations 1.21746 0.96681 1.00423 1.00296 1.21221 0.94848 1.00103 0.94082 0.91589 1.19115 0.96144 0.95369 0.90393 1.21268 1.34546 1.08274 0.90961 0.92506 1.25026 0.95334 0.95097 0.99137 1.69974 1.39146 1.21253 1.23295 0.86576 0.78276 0.80117 0.83281 1.19743 1.21069 1.21115 1.22143 1.00426 0.94440 0.89351 1.60587 1.19624 1.50577 1.01343 1.22000 1.01092 0.94602 0.88504 1.20589 1.01473 0.93027 0.92080 0.88513 1.24347 1.05423 0.98722 0.91923 1.86122 1.92518 1.05652 1.08234 1.22059 1.03157 0.96002 0.97424 1.20426 1.00564 0.95048 0.95427 1.21098 0.99265 0.92946 0.99191 1.20985 0.99859 1.00123 0.93174 1.20892 0.99508 0.93123 0.97637 1.20808 1.00382 0.94436 0.94631 0.94052 0.94986 0.91821 0.96666 0.96773 0.93140 0.91405 0.95744 0.84287 0.90584 0.94802 0.87758 0.86251 0.85632 0.85216 0.85576 0.85825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.77 37.16 0.33 -2.08 16 2 C -0.08 -1.65 2.55 -90.62 -0.23 -1.88 16 3 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 4 C 0.03 0.69 4.45 -27.89 -0.12 0.56 16 5 C -0.51 -14.18 8.41 -34.44 -0.29 -14.47 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 9 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 13 C 0.06 1.06 5.14 -3.82 -0.02 1.04 16 14 N -0.69 -9.09 6.20 -113.78 -0.71 -9.80 16 15 C 0.07 0.78 4.74 -3.82 -0.02 0.76 16 16 C -0.05 -0.53 2.76 -91.08 -0.25 -0.79 16 17 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 18 C -0.06 -0.58 6.74 37.76 0.25 -0.33 16 19 S -0.17 -1.89 23.08 -107.50 -2.48 -4.37 16 20 C -0.07 -0.82 6.48 -39.13 -0.25 -1.08 16 21 C -0.09 -0.87 10.05 -39.44 -0.40 -1.27 16 22 C -0.11 -0.85 10.08 -39.63 -0.40 -1.25 16 23 C -0.12 -1.01 10.00 -39.75 -0.40 -1.41 16 24 C -0.09 -0.88 9.45 -39.27 -0.37 -1.25 16 25 C -0.10 -1.04 5.56 -103.79 -0.58 -1.62 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.03 0.47 6.68 -51.92 -0.35 0.12 16 28 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 29 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.34 4.19 6.98 -39.29 -0.27 3.92 16 35 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 36 H 0.03 0.37 6.96 -51.93 -0.36 0.01 16 37 H 0.10 1.13 7.88 -51.92 -0.41 0.72 16 38 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.12 1.05 7.05 -52.48 -0.37 0.68 16 LS Contribution 349.31 15.07 5.26 5.26 Total: -1.00 -29.90 349.31 -11.75 -41.65 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -6.70 Total: 0.40 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: -2.85 Total: -23.59 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.03 Total: -35.91 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.89 SS G_CDS: -2.48 Total: -4.37 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.90 -11.75 -41.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602672121.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.897 kcal (2) G-P(sol) polarization free energy of solvation -29.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds