Wall clock time and date at job start Tue Mar 31 2020 06:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46808 * 2 1 4 4 C 1.52995 * 109.46946 * 239.99206 * 2 1 3 5 5 C 1.50698 * 109.47053 * 65.00433 * 4 2 1 6 6 H 1.08002 * 120.00089 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99994 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99978 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00077 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47095 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47130 * 120.00317 * 9 7 5 12 12 H 1.48504 * 109.46908 * 240.00265 * 9 7 5 13 13 C 1.53007 * 109.47045 * 119.99123 * 2 1 3 14 14 N 1.46894 * 109.47263 * 295.00463 * 13 2 1 15 15 C 1.46895 * 111.00108 * 179.97438 * 14 13 2 16 16 C 1.53004 * 109.47257 * 179.97438 * 15 14 13 17 17 H 1.08993 * 109.27425 * 55.45766 * 16 15 14 18 18 C 1.54150 * 109.28533 * 295.99479 * 16 15 14 19 19 S 1.83287 * 101.07651 * 211.31412 * 18 16 15 20 20 C 1.77438 * 96.62327 * 24.79713 * 19 18 16 21 21 C 1.38825 * 130.56461 * 164.73122 * 20 19 18 22 22 C 1.38028 * 120.15953 * 180.60273 * 21 20 19 23 23 C 1.38322 * 119.29320 * 0.02588 * 22 21 20 24 24 C 1.37704 * 120.54128 * 359.86105 * 23 22 21 25 25 C 1.38879 * 108.28845 * 345.00287 * 20 19 18 26 26 H 1.08995 * 109.47132 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47042 * 300.00514 * 1 2 3 28 28 H 1.09000 * 109.47196 * 60.00480 * 1 2 3 29 29 H 1.09003 * 109.46674 * 184.99827 * 4 2 1 30 30 H 1.09000 * 109.47424 * 304.99939 * 4 2 1 31 31 H 0.97001 * 119.99993 * 179.97438 * 8 7 5 32 32 H 1.08991 * 109.47078 * 174.99826 * 13 2 1 33 33 H 1.09002 * 109.46796 * 54.99933 * 13 2 1 34 34 H 1.00899 * 111.00552 * 56.04053 * 14 13 2 35 35 H 1.09004 * 109.47241 * 59.99423 * 15 14 13 36 36 H 1.09001 * 109.47255 * 299.99511 * 15 14 13 37 37 H 1.09008 * 111.09932 * 329.25153 * 18 16 15 38 38 H 1.08991 * 111.09890 * 93.30903 * 18 16 15 39 39 H 1.08001 * 119.91771 * 0.61832 * 21 20 19 40 40 H 1.07997 * 120.34923 * 180.02562 * 22 21 20 41 41 H 1.07994 * 119.72799 * 179.84627 * 23 22 21 42 42 H 1.08003 * 119.47425 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6414 0.0568 -2.4765 6 1 1.0801 0.9740 -2.3758 7 6 1.9933 -0.4021 -3.7281 8 7 2.6763 -1.5192 -3.8509 9 14 1.4986 0.5621 -5.2497 10 1 0.7413 1.7733 -4.8436 11 1 2.7164 0.9675 -5.9964 12 1 0.6451 -0.2877 -6.1184 13 6 2.0401 -0.7211 1.2494 14 7 1.6514 0.0376 2.4457 15 6 2.1247 -0.6267 3.6673 16 6 1.7023 0.1915 4.8892 17 1 0.6222 0.3364 4.8694 18 6 2.3995 1.5657 4.8476 19 16 2.5855 1.9205 6.6361 20 6 2.5599 0.2329 7.1833 21 6 2.9287 -0.3279 8.3986 22 6 2.8306 -1.6910 8.5916 23 6 2.3624 -2.4883 7.5627 24 6 1.9944 -1.9317 6.3581 25 6 2.0820 -0.5550 6.1443 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.1263 -0.7996 -1.2054 30 1 1.6054 -1.7200 -1.2949 31 1 2.9236 -1.8423 -4.7315 32 1 3.1263 -0.7993 1.2058 33 1 1.6054 -1.7196 1.2954 34 1 0.6528 0.1796 2.4753 35 1 3.2116 -0.7047 3.6407 36 1 1.6903 -1.6245 3.7299 37 1 3.3711 1.4981 4.3580 38 1 1.7692 2.3109 4.3623 39 1 3.2931 0.3041 9.1949 40 1 3.1163 -2.1304 9.5358 41 1 2.2851 -3.5560 7.7052 42 1 1.6315 -2.5704 5.5664 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602672121.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:07 Heat of formation + Delta-G solvation = -10.269028 kcal Electronic energy + Delta-G solvation = -20095.262621 eV Core-core repulsion = 17164.414233 eV Total energy + Delta-G solvation = -2930.848388 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.56754 -38.60579 -36.77548 -34.89567 -33.35257 -31.85275 -30.43395 -28.95605 -27.72955 -26.23617 -24.40140 -23.80097 -23.14780 -21.51978 -20.55109 -18.76141 -18.50181 -17.07189 -16.81271 -16.52863 -16.18019 -16.13521 -15.85597 -15.35135 -15.12605 -14.62436 -14.43155 -13.98911 -13.90674 -13.73565 -13.69053 -13.34131 -13.21324 -13.03602 -12.75960 -12.60957 -12.47277 -12.27137 -12.16459 -11.97366 -11.80990 -11.48138 -11.16504 -11.05331 -10.90609 -10.63876 -10.53586 -9.78628 -9.36981 -8.45393 -8.17348 -6.26056 0.16940 0.33361 0.63387 1.28195 1.39887 1.40791 1.53405 2.42161 2.66930 3.10249 3.16450 3.39534 3.79724 3.83065 3.97362 4.17584 4.20177 4.24685 4.28813 4.42332 4.44722 4.47167 4.56138 4.67109 4.73376 4.80126 4.81899 4.88985 4.97381 5.03541 5.05835 5.25406 5.29625 5.40102 5.40825 5.50867 5.52774 5.56740 5.81010 5.90513 5.93433 6.03224 6.31684 6.49325 6.90625 7.42347 8.94936 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.032266 B = 0.002619 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.570269 B =10688.031770 C =11197.843230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.075 4.075 3 H 0.058 0.942 4 C 0.031 3.969 5 C -0.526 4.526 6 H 0.061 0.939 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.960 3.040 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.280 1.280 13 C 0.079 3.921 14 N -0.685 5.685 15 C 0.076 3.924 16 C -0.043 4.043 17 H 0.104 0.896 18 C -0.051 4.051 19 S -0.194 6.194 20 C -0.094 4.094 21 C -0.102 4.102 22 C -0.102 4.102 23 C -0.121 4.121 24 C -0.103 4.103 25 C -0.112 4.112 26 H 0.040 0.960 27 H 0.069 0.931 28 H 0.043 0.957 29 H -0.014 1.014 30 H -0.010 1.010 31 H 0.261 0.739 32 H 0.056 0.944 33 H 0.025 0.975 34 H 0.347 0.653 35 H 0.067 0.933 36 H 0.043 0.957 37 H 0.096 0.904 38 H 0.127 0.873 39 H 0.136 0.864 40 H 0.159 0.841 41 H 0.151 0.849 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.374 0.517 25.768 25.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.093 4.093 3 H 0.076 0.924 4 C -0.006 4.006 5 C -0.564 4.564 6 H 0.079 0.921 7 C -0.201 4.201 8 N -0.577 5.577 9 Si 0.785 3.215 10 H -0.185 1.185 11 H -0.207 1.207 12 H -0.206 1.206 13 C -0.051 4.051 14 N -0.317 5.317 15 C -0.055 4.055 16 C -0.062 4.062 17 H 0.122 0.878 18 C -0.199 4.199 19 S 0.049 5.951 20 C -0.206 4.206 21 C -0.126 4.126 22 C -0.121 4.121 23 C -0.141 4.141 24 C -0.123 4.123 25 C -0.118 4.118 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.004 0.996 30 H 0.008 0.992 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.167 0.833 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.115 0.885 38 H 0.145 0.855 39 H 0.154 0.846 40 H 0.177 0.823 41 H 0.169 0.831 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.657 2.087 26.169 26.305 hybrid contribution -0.577 -1.650 -1.760 2.481 sum -2.233 0.437 24.410 24.515 Atomic orbital electron populations 1.21658 0.94927 1.00663 1.01183 1.21006 0.96223 0.99029 0.93092 0.92379 1.19017 0.94191 0.94609 0.92799 1.21678 1.34188 1.08504 0.92054 0.92055 1.25948 0.95340 0.96105 1.02667 1.70105 1.40446 1.22983 1.24186 0.85473 0.78046 0.78926 0.79073 1.18531 1.20670 1.20555 1.21813 0.99581 0.94294 0.89373 1.60463 1.20288 1.50149 1.00842 1.21943 1.00540 0.95101 0.87890 1.20493 1.01740 0.92548 0.91441 0.87836 1.24335 1.05182 0.99129 0.91221 1.86124 1.92916 1.06932 1.09148 1.22220 1.04510 0.95504 0.98399 1.20726 1.00516 0.96076 0.95239 1.21474 0.98062 0.92271 1.00314 1.21356 0.98656 1.01519 0.92594 1.21123 0.99740 0.92781 0.98613 1.20902 1.01175 0.95059 0.94629 0.94117 0.91234 0.93750 0.99601 0.99192 0.92986 0.92566 0.95685 0.83321 0.91487 0.93924 0.88543 0.85517 0.84626 0.82325 0.83087 0.84948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 8.77 71.98 0.63 -3.76 16 2 C -0.07 -2.93 2.55 -10.79 -0.03 -2.95 16 3 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 4 C 0.03 1.63 4.45 29.85 0.13 1.76 16 5 C -0.53 -29.50 8.41 25.60 0.22 -29.28 16 6 H 0.06 3.31 7.06 -2.91 -0.02 3.29 16 7 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 8 N -0.94 -57.16 13.29 21.45 0.28 -56.88 16 9 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 10 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 13 C 0.08 2.54 5.14 86.31 0.44 2.98 16 14 N -0.68 -17.02 6.20 -513.90 -3.18 -20.20 16 15 C 0.08 1.61 4.74 86.31 0.41 2.02 16 16 C -0.04 -0.82 2.76 -11.09 -0.03 -0.85 16 17 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 18 C -0.05 -1.02 6.74 72.37 0.49 -0.54 16 19 S -0.19 -4.29 23.08 -56.49 -1.30 -5.59 16 20 C -0.09 -2.02 6.48 22.56 0.15 -1.87 16 21 C -0.10 -1.81 10.05 22.36 0.22 -1.58 16 22 C -0.10 -1.39 10.08 22.24 0.22 -1.17 16 23 C -0.12 -1.71 10.00 22.16 0.22 -1.49 16 24 C -0.10 -1.79 9.45 22.47 0.21 -1.58 16 25 C -0.11 -2.27 5.56 -19.33 -0.11 -2.38 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.07 1.87 6.68 -2.38 -0.02 1.86 16 28 H 0.04 1.69 6.95 -2.39 -0.02 1.68 16 29 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 30 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 31 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 32 H 0.06 1.94 8.14 -2.39 -0.02 1.93 16 33 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.35 7.72 6.98 -89.69 -0.63 7.09 16 35 H 0.07 1.57 8.07 -2.38 -0.02 1.55 16 36 H 0.04 0.86 6.96 -2.39 -0.02 0.84 16 37 H 0.10 2.07 7.88 -2.38 -0.02 2.05 16 38 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 40 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 41 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 42 H 0.13 1.98 7.05 -2.91 -0.02 1.96 16 Total: -1.00 -65.15 349.31 1.84 -63.31 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.37 Total: 13.38 kcal Atomic # 6 Polarization: -44.08 SS G_CDS: 3.65 Total: -40.43 kcal Atomic # 7 Polarization: -74.18 SS G_CDS: -2.90 Total: -77.08 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: -4.29 SS G_CDS: -1.30 Total: -5.59 kcal Total: -65.15 1.84 -63.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602672121.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.042 kcal (2) G-P(sol) polarization free energy of solvation -65.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds