Wall clock time and date at job start Tue Mar 31 2020 06:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 C 1.52997 * 109.47350 * 239.99782 * 2 1 3 5 5 C 1.50702 * 109.46995 * 65.00211 * 4 2 1 6 6 H 1.08000 * 119.99882 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00347 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99973 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99755 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46754 * 90.00239 * 9 7 5 11 11 H 1.48504 * 109.47033 * 210.00081 * 9 7 5 12 12 H 1.48500 * 109.47031 * 330.00469 * 9 7 5 13 13 C 1.53006 * 109.47102 * 120.00237 * 2 1 3 14 14 N 1.46902 * 109.46626 * 294.99959 * 13 2 1 15 15 C 1.46905 * 110.99800 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.47234 * 180.02562 * 15 14 13 17 17 H 1.08995 * 109.25776 * 306.94882 * 16 15 14 18 18 C 1.54132 * 109.26809 * 66.45234 * 16 15 14 19 19 S 1.83297 * 101.08518 * 92.13267 * 18 16 15 20 20 C 1.77436 * 96.60195 * 24.87962 * 19 18 16 21 21 C 1.38816 * 130.58014 * 164.56421 * 20 19 18 22 22 C 1.38021 * 120.16765 * 180.26516 * 21 20 19 23 23 C 1.38331 * 119.28642 * 359.94456 * 22 21 20 24 24 C 1.37691 * 120.54472 * 359.93723 * 23 22 21 25 25 C 1.38891 * 108.27172 * 344.56835 * 20 19 18 26 26 H 1.08997 * 109.47474 * 299.99800 * 1 2 3 27 27 H 1.09002 * 109.46922 * 60.00398 * 1 2 3 28 28 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47194 * 184.99702 * 4 2 1 30 30 H 1.08992 * 109.47477 * 305.00383 * 4 2 1 31 31 H 0.97002 * 119.99970 * 179.97438 * 8 7 5 32 32 H 1.08993 * 109.46955 * 55.00306 * 13 2 1 33 33 H 1.09000 * 109.47050 * 175.00134 * 13 2 1 34 34 H 1.00904 * 111.00423 * 303.95194 * 14 13 2 35 35 H 1.09002 * 109.47091 * 300.00139 * 15 14 13 36 36 H 1.09001 * 109.46854 * 60.00166 * 15 14 13 37 37 H 1.09002 * 111.09747 * 210.08012 * 18 16 15 38 38 H 1.08991 * 111.10251 * 334.17613 * 18 16 15 39 39 H 1.08008 * 119.91502 * 0.20989 * 21 20 19 40 40 H 1.07999 * 120.36089 * 179.97438 * 22 21 20 41 41 H 1.07998 * 119.72232 * 179.97438 * 23 22 21 42 42 H 1.07999 * 119.47616 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4765 6 1 1.0800 0.9741 -2.3757 7 6 1.9924 -0.4022 -3.7283 8 7 1.6441 0.2768 -4.7994 9 14 2.9628 -1.9889 -3.9028 10 1 2.0235 -3.1332 -4.0190 11 1 3.8109 -1.9191 -5.1198 12 1 3.8252 -2.1756 -2.7084 13 6 2.0400 -0.7213 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.7022 0.1908 4.8893 17 1 2.0327 1.2219 4.7642 18 6 0.1663 0.1605 5.0141 19 16 -0.0689 -1.2810 6.1215 20 6 1.5276 -1.2087 6.8924 21 6 1.9995 -1.8120 8.0501 22 6 3.2999 -1.6008 8.4617 23 6 4.1241 -0.7845 7.7082 24 6 3.6567 -0.1881 6.5585 25 6 2.3454 -0.3902 6.1241 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1264 -0.7994 -1.2055 30 1 1.6054 -1.7197 -1.2952 31 1 1.8913 -0.0461 -5.6800 32 1 1.6054 -1.7198 1.2951 33 1 3.1263 -0.7995 1.2056 34 1 1.9881 0.9873 2.3967 35 1 1.6920 -1.6246 3.7301 36 1 3.2126 -0.7037 3.6401 37 1 -0.2080 1.0746 5.4752 38 1 -0.3029 -0.0085 4.0450 39 1 1.3472 -2.4475 8.6307 40 1 3.6702 -2.0683 9.3621 41 1 5.1427 -0.6141 8.0239 42 1 4.3150 0.4464 5.9836 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602672122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:14 Heat of formation + Delta-G solvation = 9.642927 kcal Electronic energy + Delta-G solvation = -20203.563653 eV Core-core repulsion = 17273.578712 eV Total energy + Delta-G solvation = -2929.984941 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.84857 -37.43759 -35.60868 -33.24984 -31.82091 -31.16478 -29.66609 -27.64715 -26.47176 -24.69262 -23.09515 -22.97021 -21.86102 -20.74299 -19.07163 -17.98613 -16.77586 -16.07218 -15.81214 -15.56908 -15.13789 -14.95458 -14.60759 -14.13176 -13.85366 -13.68399 -13.28640 -13.17877 -12.78943 -12.52934 -12.43910 -12.05591 -11.97242 -11.68806 -11.54977 -11.44404 -11.21215 -10.97321 -10.73847 -10.47088 -10.32915 -9.92874 -9.80689 -9.74098 -9.45050 -9.12213 -9.04669 -8.51725 -8.29804 -7.60943 -6.02070 -3.99013 0.85119 1.00146 1.41560 2.09080 3.31542 3.32016 3.38942 3.42257 4.05609 4.21376 4.46816 4.50495 4.60401 4.69526 4.77884 5.02853 5.09164 5.15412 5.28499 5.31803 5.42563 5.47368 5.57401 5.59241 5.70991 5.76196 5.82194 5.98165 6.01397 6.04855 6.16083 6.28372 6.39540 6.55121 6.56449 6.82381 7.01006 7.11718 7.18504 7.29964 7.44189 7.52775 7.82697 8.57230 9.03615 9.60920 11.11355 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.027812 B = 0.002869 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.525885 B = 9755.455934 C =10208.809319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.073 4.073 3 H 0.060 0.940 4 C -0.010 4.010 5 C -0.513 4.513 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.062 3.938 14 N -0.685 5.685 15 C 0.068 3.932 16 C -0.052 4.052 17 H 0.094 0.906 18 C -0.070 4.070 19 S -0.155 6.155 20 C -0.074 4.074 21 C -0.092 4.092 22 C -0.104 4.104 23 C -0.123 4.123 24 C -0.091 4.091 25 C -0.099 4.099 26 H 0.044 0.956 27 H 0.059 0.941 28 H 0.039 0.961 29 H 0.012 0.988 30 H 0.011 0.989 31 H 0.262 0.738 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.338 0.662 35 H 0.080 0.920 36 H 0.033 0.967 37 H 0.094 0.906 38 H 0.134 0.866 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.430 -1.603 27.421 27.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.092 4.092 3 H 0.078 0.922 4 C -0.047 4.047 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.706 3.294 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.066 4.066 14 N -0.316 5.316 15 C -0.062 4.062 16 C -0.072 4.072 17 H 0.113 0.887 18 C -0.217 4.217 19 S 0.088 5.912 20 C -0.186 4.186 21 C -0.116 4.116 22 C -0.124 4.124 23 C -0.143 4.143 24 C -0.111 4.111 25 C -0.105 4.105 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.156 0.844 35 H 0.098 0.902 36 H 0.051 0.949 37 H 0.113 0.887 38 H 0.152 0.848 39 H 0.144 0.856 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.684 -2.654 27.310 27.447 hybrid contribution 2.614 0.096 -0.411 2.648 sum 3.297 -2.558 26.898 27.220 Atomic orbital electron populations 1.21601 0.95242 1.00671 1.00662 1.21005 0.96358 0.98990 0.92842 0.92198 1.19614 0.95695 0.95925 0.93503 1.21128 1.35258 1.09585 0.89083 0.90823 1.25031 0.95672 0.96929 0.95968 1.69914 1.47198 1.39336 0.98002 0.86807 0.80650 0.84404 0.77567 1.20340 1.21501 1.19163 1.22177 0.97195 0.97826 0.89421 1.60513 1.63939 1.05827 1.01324 1.21931 0.97558 0.98382 0.88313 1.20520 0.93208 1.01065 0.92378 0.88748 1.24447 0.97363 0.97351 1.02580 1.86183 1.17000 1.41254 1.46780 1.22139 0.97177 1.01120 0.98177 1.20432 0.96202 1.00348 0.94576 1.21103 0.93176 0.98313 0.99782 1.20968 1.00052 0.98009 0.95299 1.20848 0.94045 0.99659 0.96543 1.20824 0.94886 0.99240 0.95548 0.93742 0.92235 0.94195 0.96985 0.97037 0.92829 0.91417 0.95724 0.84410 0.90181 0.94911 0.88712 0.84778 0.85609 0.85215 0.85620 0.85984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.31 8.89 37.16 0.33 -1.98 16 2 C -0.07 -1.39 2.48 -90.62 -0.22 -1.62 16 3 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 4 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 5 C -0.51 -14.41 8.96 -34.44 -0.31 -14.72 16 6 H 0.07 2.22 7.30 -52.49 -0.38 1.84 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -27.95 13.96 55.43 0.77 -27.17 16 9 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 12 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 13 C 0.06 0.98 5.08 -3.82 -0.02 0.96 16 14 N -0.69 -8.62 5.33 -113.77 -0.61 -9.23 16 15 C 0.07 0.77 4.95 -3.82 -0.02 0.75 16 16 C -0.05 -0.51 2.72 -91.10 -0.25 -0.75 16 17 H 0.09 0.82 8.13 -51.93 -0.42 0.40 16 18 C -0.07 -0.68 6.99 37.75 0.26 -0.42 16 19 S -0.15 -1.74 23.02 -107.50 -2.47 -4.22 16 20 C -0.07 -0.80 6.48 -39.13 -0.25 -1.06 16 21 C -0.09 -0.86 10.05 -39.45 -0.40 -1.26 16 22 C -0.10 -0.82 10.08 -39.63 -0.40 -1.22 16 23 C -0.12 -0.98 10.00 -39.75 -0.40 -1.38 16 24 C -0.09 -0.83 9.97 -39.27 -0.39 -1.22 16 25 C -0.10 -1.02 5.22 -103.79 -0.54 -1.56 16 26 H 0.04 0.72 7.75 -51.93 -0.40 0.32 16 27 H 0.06 1.24 6.95 -51.93 -0.36 0.88 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 30 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.34 3.95 8.72 -39.29 -0.34 3.60 16 35 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 36 H 0.03 0.38 8.13 -51.93 -0.42 -0.05 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.13 1.42 7.41 -51.93 -0.38 1.04 16 39 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 40 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 41 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 349.89 15.07 5.27 5.27 Total: -1.00 -30.60 349.89 -11.38 -41.98 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.88 Total: 0.20 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: -2.80 Total: -24.01 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.17 Total: -36.40 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.47 Total: -4.22 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.60 -11.38 -41.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602672122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.623 kcal (2) G-P(sol) polarization free energy of solvation -30.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds