Wall clock time and date at job start Tue Mar 31 2020 06:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 C 1.52997 * 109.47350 * 239.99782 * 2 1 3 5 5 C 1.50702 * 109.46995 * 65.00211 * 4 2 1 6 6 H 1.08000 * 119.99882 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00347 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99973 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99755 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46754 * 90.00239 * 9 7 5 11 11 H 1.48504 * 109.47033 * 210.00081 * 9 7 5 12 12 H 1.48500 * 109.47031 * 330.00469 * 9 7 5 13 13 C 1.53006 * 109.47102 * 120.00237 * 2 1 3 14 14 N 1.46902 * 109.46626 * 294.99959 * 13 2 1 15 15 C 1.46905 * 110.99800 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.47234 * 180.02562 * 15 14 13 17 17 H 1.08995 * 109.25776 * 306.94882 * 16 15 14 18 18 C 1.54132 * 109.26809 * 66.45234 * 16 15 14 19 19 S 1.83297 * 101.08518 * 92.13267 * 18 16 15 20 20 C 1.77436 * 96.60195 * 24.87962 * 19 18 16 21 21 C 1.38816 * 130.58014 * 164.56421 * 20 19 18 22 22 C 1.38021 * 120.16765 * 180.26516 * 21 20 19 23 23 C 1.38331 * 119.28642 * 359.94456 * 22 21 20 24 24 C 1.37691 * 120.54472 * 359.93723 * 23 22 21 25 25 C 1.38891 * 108.27172 * 344.56835 * 20 19 18 26 26 H 1.08997 * 109.47474 * 299.99800 * 1 2 3 27 27 H 1.09002 * 109.46922 * 60.00398 * 1 2 3 28 28 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47194 * 184.99702 * 4 2 1 30 30 H 1.08992 * 109.47477 * 305.00383 * 4 2 1 31 31 H 0.97002 * 119.99970 * 179.97438 * 8 7 5 32 32 H 1.08993 * 109.46955 * 55.00306 * 13 2 1 33 33 H 1.09000 * 109.47050 * 175.00134 * 13 2 1 34 34 H 1.00904 * 111.00423 * 303.95194 * 14 13 2 35 35 H 1.09002 * 109.47091 * 300.00139 * 15 14 13 36 36 H 1.09001 * 109.46854 * 60.00166 * 15 14 13 37 37 H 1.09002 * 111.09747 * 210.08012 * 18 16 15 38 38 H 1.08991 * 111.10251 * 334.17613 * 18 16 15 39 39 H 1.08008 * 119.91502 * 0.20989 * 21 20 19 40 40 H 1.07999 * 120.36089 * 179.97438 * 22 21 20 41 41 H 1.07998 * 119.72232 * 179.97438 * 23 22 21 42 42 H 1.07999 * 119.47616 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4765 6 1 1.0800 0.9741 -2.3757 7 6 1.9924 -0.4022 -3.7283 8 7 1.6441 0.2768 -4.7994 9 14 2.9628 -1.9889 -3.9028 10 1 2.0235 -3.1332 -4.0190 11 1 3.8109 -1.9191 -5.1198 12 1 3.8252 -2.1756 -2.7084 13 6 2.0400 -0.7213 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.7022 0.1908 4.8893 17 1 2.0327 1.2219 4.7642 18 6 0.1663 0.1605 5.0141 19 16 -0.0689 -1.2810 6.1215 20 6 1.5276 -1.2087 6.8924 21 6 1.9995 -1.8120 8.0501 22 6 3.2999 -1.6008 8.4617 23 6 4.1241 -0.7845 7.7082 24 6 3.6567 -0.1881 6.5585 25 6 2.3454 -0.3902 6.1241 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1264 -0.7994 -1.2055 30 1 1.6054 -1.7197 -1.2952 31 1 1.8913 -0.0461 -5.6800 32 1 1.6054 -1.7198 1.2951 33 1 3.1263 -0.7995 1.2056 34 1 1.9881 0.9873 2.3967 35 1 1.6920 -1.6246 3.7301 36 1 3.2126 -0.7037 3.6401 37 1 -0.2080 1.0746 5.4752 38 1 -0.3029 -0.0085 4.0450 39 1 1.3472 -2.4475 8.6307 40 1 3.6702 -2.0683 9.3621 41 1 5.1427 -0.6141 8.0239 42 1 4.3150 0.4464 5.9836 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602672122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:12 Heat of formation + Delta-G solvation = -6.861246 kcal Electronic energy + Delta-G solvation = -20204.279327 eV Core-core repulsion = 17273.578712 eV Total energy + Delta-G solvation = -2930.700616 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.54253 -38.57700 -36.81070 -34.83839 -33.49218 -31.81867 -30.47625 -29.41611 -27.62633 -25.97279 -24.15045 -23.75849 -23.24165 -21.57384 -20.60290 -18.93841 -18.67186 -16.88215 -16.67684 -16.49257 -16.31034 -16.00177 -15.76551 -15.41272 -15.28064 -14.79914 -14.38967 -14.26967 -14.03493 -13.76087 -13.45553 -13.23747 -13.13961 -12.98754 -12.76762 -12.64479 -12.45314 -12.24476 -12.16998 -11.89716 -11.71075 -11.45399 -11.17151 -11.10179 -11.02172 -10.73609 -10.63660 -9.78523 -9.35295 -8.41982 -8.25872 -6.27870 0.17594 0.34148 0.65293 1.32808 1.35980 1.36870 1.48575 2.37507 2.65712 3.09486 3.15901 3.43749 3.70120 3.92974 3.95917 4.14324 4.17003 4.27143 4.37612 4.44929 4.47681 4.49389 4.54126 4.67885 4.75335 4.84799 4.88996 4.90793 4.96807 4.99278 5.04437 5.11370 5.32038 5.41152 5.41579 5.43531 5.53051 5.56191 5.72104 5.73989 5.94302 6.02648 6.35085 6.49867 6.80010 7.35701 8.90847 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.027812 B = 0.002869 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.525885 B = 9755.455934 C =10208.809319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.068 4.068 3 H 0.054 0.946 4 C -0.008 4.008 5 C -0.517 4.517 6 H 0.036 0.964 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.947 3.053 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.247 1.247 13 C 0.076 3.924 14 N -0.681 5.681 15 C 0.077 3.923 16 C -0.045 4.045 17 H 0.109 0.891 18 C -0.060 4.060 19 S -0.196 6.196 20 C -0.091 4.091 21 C -0.105 4.105 22 C -0.101 4.101 23 C -0.123 4.123 24 C -0.100 4.100 25 C -0.113 4.113 26 H 0.069 0.931 27 H 0.026 0.974 28 H 0.040 0.960 29 H 0.015 0.985 30 H 0.014 0.986 31 H 0.264 0.736 32 H 0.065 0.935 33 H 0.027 0.973 34 H 0.347 0.653 35 H 0.065 0.935 36 H 0.036 0.964 37 H 0.107 0.893 38 H 0.127 0.873 39 H 0.133 0.867 40 H 0.158 0.842 41 H 0.152 0.848 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.242 -2.487 29.722 30.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.087 4.087 3 H 0.072 0.928 4 C -0.046 4.046 5 C -0.555 4.555 6 H 0.054 0.946 7 C -0.195 4.195 8 N -0.595 5.595 9 Si 0.771 3.229 10 H -0.195 1.195 11 H -0.212 1.212 12 H -0.171 1.171 13 C -0.053 4.053 14 N -0.313 5.313 15 C -0.053 4.053 16 C -0.064 4.064 17 H 0.127 0.873 18 C -0.208 4.208 19 S 0.046 5.954 20 C -0.204 4.204 21 C -0.129 4.129 22 C -0.121 4.121 23 C -0.143 4.143 24 C -0.119 4.119 25 C -0.119 4.119 26 H 0.088 0.912 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.034 0.966 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.165 0.835 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.126 0.874 38 H 0.145 0.855 39 H 0.151 0.849 40 H 0.175 0.825 41 H 0.170 0.830 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.500 -3.531 29.642 29.956 hybrid contribution 2.031 0.446 -1.058 2.333 sum 4.530 -3.085 28.584 29.105 Atomic orbital electron populations 1.21506 0.95035 1.00555 1.00242 1.20870 0.96452 0.98563 0.92799 0.92761 1.19580 0.95845 0.95705 0.93477 1.21458 1.34161 1.08700 0.91178 0.94554 1.25990 0.97065 1.00865 0.95600 1.70070 1.49137 1.41626 0.98694 0.85712 0.79367 0.79653 0.78218 1.19481 1.21185 1.17102 1.21869 0.97083 0.97406 0.88914 1.60402 1.64061 1.06065 1.00738 1.21826 0.97501 0.97806 0.88131 1.20445 0.92950 1.01455 0.91566 0.87296 1.24440 0.97579 0.96998 1.01764 1.86240 1.18592 1.42690 1.47897 1.22263 0.96592 1.02336 0.99183 1.20712 0.97234 1.00534 0.94422 1.21470 0.92369 0.97761 1.00492 1.21353 1.01249 0.97061 0.94630 1.21127 0.93706 0.99946 0.97165 1.20931 0.95540 0.99669 0.95754 0.91201 0.95508 0.94116 0.96648 0.96767 0.92709 0.91605 0.95447 0.83454 0.91644 0.94601 0.87411 0.85520 0.84898 0.82474 0.83024 0.84550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.27 8.89 71.98 0.64 -3.63 16 2 C -0.07 -2.53 2.48 -10.79 -0.03 -2.55 16 3 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 4 C -0.01 -0.38 3.52 29.85 0.10 -0.27 16 5 C -0.52 -29.61 8.96 25.60 0.23 -29.38 16 6 H 0.04 2.29 7.30 -2.91 -0.02 2.27 16 7 C 0.00 0.05 5.47 84.66 0.46 0.51 16 8 N -0.95 -60.38 13.96 21.45 0.30 -60.08 16 9 Si 0.95 44.74 27.47 68.60 1.88 46.63 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 12 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 13 C 0.08 2.24 5.08 86.31 0.44 2.68 16 14 N -0.68 -15.72 5.33 -513.86 -2.74 -18.46 16 15 C 0.08 1.59 4.95 86.30 0.43 2.01 16 16 C -0.04 -0.79 2.72 -11.10 -0.03 -0.82 16 17 H 0.11 1.61 8.13 -2.39 -0.02 1.59 16 18 C -0.06 -1.11 6.99 72.37 0.51 -0.61 16 19 S -0.20 -4.36 23.02 -56.49 -1.30 -5.66 16 20 C -0.09 -1.90 6.48 22.56 0.15 -1.76 16 21 C -0.11 -1.83 10.05 22.36 0.22 -1.61 16 22 C -0.10 -1.32 10.08 22.24 0.22 -1.10 16 23 C -0.12 -1.58 10.00 22.16 0.22 -1.35 16 24 C -0.10 -1.55 9.97 22.47 0.22 -1.33 16 25 C -0.11 -2.14 5.22 -19.32 -0.10 -2.24 16 26 H 0.07 2.18 7.75 -2.39 -0.02 2.17 16 27 H 0.03 1.13 6.95 -2.39 -0.02 1.11 16 28 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.02 0.70 7.20 -2.38 -0.02 0.68 16 30 H 0.01 0.64 7.57 -2.39 -0.02 0.63 16 31 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 32 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.35 7.24 8.72 -89.69 -0.78 6.46 16 35 H 0.07 1.57 8.10 -2.39 -0.02 1.56 16 36 H 0.04 0.74 8.13 -2.39 -0.02 0.72 16 37 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.13 2.54 7.41 -2.39 -0.02 2.52 16 39 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 40 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 41 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 42 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -67.17 349.89 1.99 -65.18 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.15 Total: 13.83 kcal Atomic # 6 Polarization: -45.13 SS G_CDS: 3.69 Total: -41.43 kcal Atomic # 7 Polarization: -76.10 SS G_CDS: -2.44 Total: -78.54 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.88 Total: 46.63 kcal Atomic # 16 Polarization: -4.36 SS G_CDS: -1.30 Total: -5.66 kcal Total: -67.17 1.99 -65.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602672122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.316 kcal (2) G-P(sol) polarization free energy of solvation -67.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds