Wall clock time and date at job start Tue Mar 31 2020 06:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47011 * 2 1 4 4 C 1.52998 * 109.47357 * 120.00873 * 2 1 3 5 5 C 1.50699 * 109.46700 * 294.99511 * 4 2 1 6 6 H 1.07999 * 120.00803 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99889 * 180.02562 * 5 4 2 8 8 N 1.31520 * 120.00186 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00030 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 89.99863 * 9 7 5 11 11 H 1.48503 * 109.47261 * 330.00044 * 9 7 5 12 12 H 1.48500 * 109.47454 * 210.00037 * 9 7 5 13 13 C 1.53001 * 109.46691 * 240.00504 * 2 1 3 14 14 N 1.46902 * 109.47166 * 65.00267 * 13 2 1 15 15 C 1.46902 * 110.99926 * 180.02562 * 14 13 2 16 16 C 1.53002 * 109.46776 * 179.97438 * 15 14 13 17 17 H 1.09005 * 109.26175 * 53.04985 * 16 15 14 18 18 C 1.54137 * 109.27271 * 293.54205 * 16 15 14 19 19 S 1.83294 * 101.08797 * 211.55826 * 18 16 15 20 20 C 1.77436 * 96.60028 * 24.87645 * 19 18 16 21 21 C 1.38816 * 130.56794 * 164.56887 * 20 19 18 22 22 C 1.38031 * 120.15723 * 180.20289 * 21 20 19 23 23 C 1.38321 * 119.29127 * 0.03037 * 22 21 20 24 24 C 1.37701 * 120.54213 * 359.87058 * 23 22 21 25 25 C 1.38883 * 108.27536 * 344.56748 * 20 19 18 26 26 H 1.09005 * 109.46651 * 299.99122 * 1 2 3 27 27 H 1.08990 * 109.47103 * 59.99453 * 1 2 3 28 28 H 1.08997 * 109.47011 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47139 * 174.99888 * 4 2 1 30 30 H 1.08997 * 109.47675 * 54.99488 * 4 2 1 31 31 H 0.96998 * 120.00124 * 180.02562 * 8 7 5 32 32 H 1.09006 * 109.46983 * 184.99466 * 13 2 1 33 33 H 1.09000 * 109.47580 * 304.99729 * 13 2 1 34 34 H 1.00903 * 110.99774 * 303.94991 * 14 13 2 35 35 H 1.09001 * 109.46587 * 299.99317 * 15 14 13 36 36 H 1.08997 * 109.47516 * 59.99803 * 15 14 13 37 37 H 1.09001 * 111.09548 * 329.51008 * 18 16 15 38 38 H 1.08995 * 111.09565 * 93.55586 * 18 16 15 39 39 H 1.07996 * 119.92403 * 0.23319 * 21 20 19 40 40 H 1.08002 * 120.35509 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.72850 * 179.84768 * 23 22 21 42 42 H 1.08006 * 119.46742 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.6415 0.0568 2.4765 6 1 1.0802 0.9740 2.3758 7 6 1.9935 -0.4021 3.7282 8 7 1.6452 0.2768 4.7994 9 14 2.9650 -1.9880 3.9024 10 1 4.4183 -1.6835 3.8780 11 1 2.6312 -2.8990 2.7782 12 1 2.6179 -2.6423 5.1895 13 6 2.0399 -0.7212 -1.2493 14 7 1.6513 0.0377 -2.4457 15 6 2.1246 -0.6268 -3.6673 16 6 1.7011 0.1908 -4.8893 17 1 2.0325 1.2217 -4.7645 18 6 0.1651 0.1617 -5.0135 19 16 -0.0435 0.2614 -6.8318 20 6 1.5390 -0.4197 -7.2562 21 6 2.0117 -0.9231 -8.4605 22 6 3.2997 -1.4110 -8.5504 23 6 4.1101 -1.3926 -7.4296 24 6 3.6417 -0.8914 -6.2356 25 6 2.3434 -0.3908 -6.1244 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1264 -0.7996 1.2054 30 1 1.6055 -1.7199 1.2950 31 1 1.8931 -0.0458 5.6799 32 1 3.1263 -0.7993 -1.2058 33 1 1.6053 -1.7197 -1.2954 34 1 0.6527 0.1795 -2.4753 35 1 3.2115 -0.7047 -3.6407 36 1 1.6902 -1.6245 -3.7299 37 1 -0.2426 -0.7705 -4.6224 38 1 -0.2849 1.0221 -4.5185 39 1 1.3702 -0.9325 -9.3293 40 1 3.6706 -1.8037 -9.4857 41 1 5.1183 -1.7748 -7.4913 42 1 4.2895 -0.8851 -5.3714 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602672123.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:18 Heat of formation + Delta-G solvation = 8.909771 kcal Electronic energy + Delta-G solvation = -20161.637194 eV Core-core repulsion = 17231.620461 eV Total energy + Delta-G solvation = -2930.016733 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.89041 -37.54507 -35.65475 -33.25457 -31.84657 -31.19038 -29.70722 -27.74654 -26.63690 -24.98974 -23.27024 -22.72831 -21.77141 -20.62593 -19.03351 -18.06293 -16.91732 -16.46963 -15.76953 -15.70110 -15.20663 -14.79688 -14.46196 -14.13182 -13.94509 -13.73961 -13.40722 -13.28087 -12.86861 -12.56222 -12.51818 -12.27800 -12.05027 -11.84697 -11.62583 -11.52730 -11.14381 -11.01678 -10.72075 -10.45350 -10.40519 -9.97185 -9.93535 -9.68994 -9.48736 -9.12158 -9.06984 -8.52711 -8.34731 -7.70517 -6.03001 -4.00099 0.83514 0.99441 1.31202 1.96592 3.30364 3.32246 3.37975 3.41014 4.01179 4.09617 4.45723 4.49181 4.60597 4.64763 4.71786 4.98845 5.01455 5.11884 5.25999 5.27911 5.30499 5.37450 5.50021 5.59572 5.63886 5.71004 5.79860 5.90317 5.94569 6.03066 6.09693 6.16134 6.31953 6.40900 6.54527 6.71845 6.93388 7.02072 7.14012 7.27166 7.42077 7.51377 7.81358 8.56054 9.02597 9.59802 11.10407 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.028768 B = 0.002811 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.057766 B = 9959.918372 C =10728.196075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 H 0.072 0.928 4 C -0.009 4.009 5 C -0.513 4.513 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.267 1.267 12 H -0.289 1.289 13 C 0.062 3.938 14 N -0.689 5.689 15 C 0.069 3.931 16 C -0.053 4.053 17 H 0.111 0.889 18 C -0.080 4.080 19 S -0.153 6.153 20 C -0.079 4.079 21 C -0.090 4.090 22 C -0.106 4.106 23 C -0.120 4.120 24 C -0.092 4.092 25 C -0.094 4.094 26 H 0.069 0.931 27 H 0.033 0.967 28 H 0.040 0.960 29 H 0.011 0.989 30 H 0.014 0.986 31 H 0.262 0.738 32 H 0.068 0.932 33 H 0.025 0.975 34 H 0.339 0.661 35 H 0.078 0.922 36 H 0.032 0.968 37 H 0.097 0.903 38 H 0.120 0.880 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.261 -3.434 -27.044 27.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.094 4.094 3 H 0.090 0.910 4 C -0.046 4.046 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.191 1.191 12 H -0.215 1.215 13 C -0.067 4.067 14 N -0.321 5.321 15 C -0.062 4.062 16 C -0.073 4.073 17 H 0.129 0.871 18 C -0.228 4.228 19 S 0.090 5.910 20 C -0.191 4.191 21 C -0.113 4.113 22 C -0.126 4.126 23 C -0.140 4.140 24 C -0.111 4.111 25 C -0.100 4.100 26 H 0.088 0.912 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.029 0.971 30 H 0.032 0.968 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.158 0.842 35 H 0.096 0.904 36 H 0.050 0.950 37 H 0.116 0.884 38 H 0.139 0.861 39 H 0.144 0.856 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.696 -2.537 -27.451 27.577 hybrid contribution 0.970 -2.055 0.892 2.441 sum 1.666 -4.592 -26.559 27.005 Atomic orbital electron populations 1.21753 0.96213 1.00521 1.00843 1.21033 0.95241 1.00225 0.92948 0.90957 1.19601 0.95598 0.96034 0.93408 1.21127 1.35394 1.09523 0.89079 0.90807 1.25034 0.95703 0.96900 0.95969 1.69915 1.47167 1.39303 0.98018 0.86806 0.80679 0.84486 0.77432 1.20357 1.19148 1.21498 1.22181 1.00409 0.94495 0.89614 1.60601 1.19753 1.50437 1.01274 1.21997 1.01096 0.94572 0.88496 1.20609 0.92121 1.02204 0.92332 0.87118 1.24486 0.98062 1.07037 0.93265 1.86113 1.19277 1.78417 1.07210 1.22061 0.97043 1.03048 0.96976 1.20418 0.96275 0.98916 0.95738 1.21104 0.93310 0.99348 0.98801 1.21003 1.00136 1.00199 0.92653 1.20907 0.94208 0.97732 0.98274 1.20799 0.95045 1.00220 0.93890 0.91235 0.94778 0.94066 0.97119 0.96814 0.92816 0.91377 0.95712 0.84210 0.90351 0.95020 0.88425 0.86142 0.85624 0.85181 0.85508 0.85624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.77 37.16 0.33 -2.08 16 2 C -0.08 -1.44 2.55 -90.62 -0.23 -1.67 16 3 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 4 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 5 C -0.51 -14.34 8.96 -34.44 -0.31 -14.65 16 6 H 0.07 2.21 7.30 -52.49 -0.38 1.83 16 7 C 0.06 1.87 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 9 Si 0.88 21.67 27.47 -169.99 -4.67 17.01 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 C 0.06 0.96 5.14 -3.82 -0.02 0.94 16 14 N -0.69 -8.85 6.50 -113.77 -0.74 -9.59 16 15 C 0.07 0.75 4.86 -3.82 -0.02 0.73 16 16 C -0.05 -0.53 2.80 -91.09 -0.26 -0.79 16 17 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 18 C -0.08 -0.74 6.13 37.75 0.23 -0.51 16 19 S -0.15 -1.61 23.08 -107.50 -2.48 -4.09 16 20 C -0.08 -0.84 6.48 -39.13 -0.25 -1.10 16 21 C -0.09 -0.82 10.05 -39.44 -0.40 -1.22 16 22 C -0.11 -0.82 10.08 -39.63 -0.40 -1.22 16 23 C -0.12 -0.96 10.00 -39.75 -0.40 -1.36 16 24 C -0.09 -0.85 9.43 -39.27 -0.37 -1.22 16 25 C -0.09 -0.97 5.56 -103.79 -0.58 -1.55 16 26 H 0.07 1.40 6.95 -51.93 -0.36 1.04 16 27 H 0.03 0.49 6.68 -51.93 -0.35 0.15 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 30 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.34 4.05 6.11 -39.29 -0.24 3.81 16 35 H 0.08 0.84 6.86 -51.93 -0.36 0.49 16 36 H 0.03 0.35 8.01 -51.93 -0.42 -0.06 16 37 H 0.10 0.87 7.84 -51.93 -0.41 0.47 16 38 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 40 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.13 1.03 7.02 -52.48 -0.37 0.66 16 LS Contribution 344.44 15.07 5.19 5.19 Total: -1.00 -30.61 344.44 -11.41 -42.02 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.62 Total: 0.73 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: -2.87 Total: -24.21 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.03 Total: -36.64 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.01 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.48 Total: -4.09 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.61 -11.41 -42.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602672123.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.929 kcal (2) G-P(sol) polarization free energy of solvation -30.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds