Wall clock time and date at job start Tue Mar 31 2020 06:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47011 * 2 1 4 4 C 1.52998 * 109.47357 * 120.00873 * 2 1 3 5 5 C 1.50699 * 109.46700 * 294.99511 * 4 2 1 6 6 H 1.07999 * 120.00803 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99889 * 180.02562 * 5 4 2 8 8 N 1.31520 * 120.00186 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00030 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 89.99863 * 9 7 5 11 11 H 1.48503 * 109.47261 * 330.00044 * 9 7 5 12 12 H 1.48500 * 109.47454 * 210.00037 * 9 7 5 13 13 C 1.53001 * 109.46691 * 240.00504 * 2 1 3 14 14 N 1.46902 * 109.47166 * 65.00267 * 13 2 1 15 15 C 1.46902 * 110.99926 * 180.02562 * 14 13 2 16 16 C 1.53002 * 109.46776 * 179.97438 * 15 14 13 17 17 H 1.09005 * 109.26175 * 53.04985 * 16 15 14 18 18 C 1.54137 * 109.27271 * 293.54205 * 16 15 14 19 19 S 1.83294 * 101.08797 * 211.55826 * 18 16 15 20 20 C 1.77436 * 96.60028 * 24.87645 * 19 18 16 21 21 C 1.38816 * 130.56794 * 164.56887 * 20 19 18 22 22 C 1.38031 * 120.15723 * 180.20289 * 21 20 19 23 23 C 1.38321 * 119.29127 * 0.03037 * 22 21 20 24 24 C 1.37701 * 120.54213 * 359.87058 * 23 22 21 25 25 C 1.38883 * 108.27536 * 344.56748 * 20 19 18 26 26 H 1.09005 * 109.46651 * 299.99122 * 1 2 3 27 27 H 1.08990 * 109.47103 * 59.99453 * 1 2 3 28 28 H 1.08997 * 109.47011 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47139 * 174.99888 * 4 2 1 30 30 H 1.08997 * 109.47675 * 54.99488 * 4 2 1 31 31 H 0.96998 * 120.00124 * 180.02562 * 8 7 5 32 32 H 1.09006 * 109.46983 * 184.99466 * 13 2 1 33 33 H 1.09000 * 109.47580 * 304.99729 * 13 2 1 34 34 H 1.00903 * 110.99774 * 303.94991 * 14 13 2 35 35 H 1.09001 * 109.46587 * 299.99317 * 15 14 13 36 36 H 1.08997 * 109.47516 * 59.99803 * 15 14 13 37 37 H 1.09001 * 111.09548 * 329.51008 * 18 16 15 38 38 H 1.08995 * 111.09565 * 93.55586 * 18 16 15 39 39 H 1.07996 * 119.92403 * 0.23319 * 21 20 19 40 40 H 1.08002 * 120.35509 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.72850 * 179.84768 * 23 22 21 42 42 H 1.08006 * 119.46742 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.6415 0.0568 2.4765 6 1 1.0802 0.9740 2.3758 7 6 1.9935 -0.4021 3.7282 8 7 1.6452 0.2768 4.7994 9 14 2.9650 -1.9880 3.9024 10 1 4.4183 -1.6835 3.8780 11 1 2.6312 -2.8990 2.7782 12 1 2.6179 -2.6423 5.1895 13 6 2.0399 -0.7212 -1.2493 14 7 1.6513 0.0377 -2.4457 15 6 2.1246 -0.6268 -3.6673 16 6 1.7011 0.1908 -4.8893 17 1 2.0325 1.2217 -4.7645 18 6 0.1651 0.1617 -5.0135 19 16 -0.0435 0.2614 -6.8318 20 6 1.5390 -0.4197 -7.2562 21 6 2.0117 -0.9231 -8.4605 22 6 3.2997 -1.4110 -8.5504 23 6 4.1101 -1.3926 -7.4296 24 6 3.6417 -0.8914 -6.2356 25 6 2.3434 -0.3908 -6.1244 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1264 -0.7996 1.2054 30 1 1.6055 -1.7199 1.2950 31 1 1.8931 -0.0458 5.6799 32 1 3.1263 -0.7993 -1.2058 33 1 1.6053 -1.7197 -1.2954 34 1 0.6527 0.1795 -2.4753 35 1 3.2115 -0.7047 -3.6407 36 1 1.6902 -1.6245 -3.7299 37 1 -0.2426 -0.7705 -4.6224 38 1 -0.2849 1.0221 -4.5185 39 1 1.3702 -0.9325 -9.3293 40 1 3.6706 -1.8037 -9.4857 41 1 5.1183 -1.7748 -7.4913 42 1 4.2895 -0.8851 -5.3714 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602672123.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:17 Heat of formation + Delta-G solvation = -8.056116 kcal Electronic energy + Delta-G solvation = -20162.372890 eV Core-core repulsion = 17231.620461 eV Total energy + Delta-G solvation = -2930.752429 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.58416 -38.66559 -36.82541 -34.84280 -33.47228 -31.86448 -30.50766 -29.44477 -27.74009 -26.26238 -24.20524 -23.71007 -23.05027 -21.42588 -20.56526 -18.99933 -18.70829 -17.45996 -16.71801 -16.39444 -16.30296 -15.89302 -15.74334 -15.35757 -15.08979 -14.80908 -14.69227 -14.25415 -13.97308 -13.80986 -13.58939 -13.52415 -13.30649 -12.95488 -12.79628 -12.71044 -12.36058 -12.26014 -12.08320 -11.86875 -11.73910 -11.44227 -11.25675 -11.11591 -11.02306 -10.72716 -10.65228 -9.78311 -9.38223 -8.46962 -8.25339 -6.27590 0.16253 0.33405 0.58549 1.23239 1.36513 1.37985 1.49545 2.38213 2.66742 3.09820 3.10371 3.35797 3.72338 3.84416 3.96555 4.14997 4.16521 4.19902 4.27305 4.40341 4.42138 4.45701 4.51416 4.57344 4.71102 4.76270 4.80896 4.84679 4.96578 5.00473 5.06169 5.07248 5.28651 5.30811 5.38114 5.40601 5.52959 5.55970 5.70680 5.74114 5.93526 6.05495 6.35330 6.46432 6.80401 7.35964 8.91438 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.028768 B = 0.002811 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.057766 B = 9959.918372 C =10728.196075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.072 4.072 3 H 0.054 0.946 4 C -0.007 4.007 5 C -0.518 4.518 6 H 0.035 0.965 7 C 0.000 4.000 8 N -0.955 5.955 9 Si 0.948 3.052 10 H -0.268 1.268 11 H -0.246 1.246 12 H -0.287 1.287 13 C 0.074 3.926 14 N -0.691 5.691 15 C 0.076 3.924 16 C -0.045 4.045 17 H 0.104 0.896 18 C -0.074 4.074 19 S -0.182 6.182 20 C -0.098 4.098 21 C -0.102 4.102 22 C -0.103 4.103 23 C -0.121 4.121 24 C -0.103 4.103 25 C -0.110 4.110 26 H 0.034 0.966 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.015 0.985 30 H 0.018 0.982 31 H 0.264 0.736 32 H 0.068 0.932 33 H 0.032 0.968 34 H 0.345 0.655 35 H 0.081 0.919 36 H 0.034 0.966 37 H 0.102 0.898 38 H 0.130 0.870 39 H 0.136 0.864 40 H 0.159 0.841 41 H 0.152 0.848 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.547 -5.380 -29.200 29.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.091 4.091 3 H 0.072 0.928 4 C -0.045 4.045 5 C -0.556 4.556 6 H 0.053 0.947 7 C -0.196 4.196 8 N -0.596 5.596 9 Si 0.772 3.228 10 H -0.193 1.193 11 H -0.170 1.170 12 H -0.213 1.213 13 C -0.055 4.055 14 N -0.323 5.323 15 C -0.054 4.054 16 C -0.064 4.064 17 H 0.122 0.878 18 C -0.222 4.222 19 S 0.060 5.940 20 C -0.210 4.210 21 C -0.125 4.125 22 C -0.122 4.122 23 C -0.140 4.140 24 C -0.122 4.122 25 C -0.115 4.115 26 H 0.053 0.947 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.033 0.967 30 H 0.036 0.964 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.165 0.835 35 H 0.099 0.901 36 H 0.052 0.948 37 H 0.121 0.879 38 H 0.148 0.852 39 H 0.154 0.846 40 H 0.176 0.824 41 H 0.169 0.831 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.981 -4.480 -29.641 30.043 hybrid contribution 0.555 -1.369 1.499 2.105 sum 2.536 -5.850 -28.142 28.855 Atomic orbital electron populations 1.21674 0.95350 1.00972 1.00777 1.20891 0.95989 0.99106 0.93075 0.92759 1.19565 0.95859 0.95802 0.93267 1.21466 1.34267 1.08611 0.91246 0.94704 1.26017 0.97109 1.00939 0.95568 1.70077 1.49168 1.41648 0.98716 0.85687 0.79190 0.79940 0.77972 1.19342 1.16962 1.21330 1.21898 1.00313 0.94390 0.88856 1.60512 1.20316 1.50342 1.01158 1.21958 1.01212 0.94567 0.87672 1.20497 0.92436 1.01566 0.91933 0.87832 1.24526 0.97748 1.07724 0.92184 1.86135 1.20248 1.78894 1.08694 1.22226 0.96817 1.04106 0.97831 1.20718 0.97228 0.98906 0.95667 1.21477 0.92550 0.98239 0.99952 1.21366 1.01263 0.99256 0.92156 1.21142 0.93948 0.97856 0.99293 1.20898 0.95685 1.01094 0.93873 0.94719 0.91453 0.93284 0.96652 0.96396 0.92723 0.91315 0.94931 0.83545 0.90081 0.94755 0.87947 0.85152 0.84639 0.82363 0.83059 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.50 8.77 71.98 0.63 -3.87 16 2 C -0.07 -2.66 2.55 -10.79 -0.03 -2.69 16 3 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 4 C -0.01 -0.32 3.52 29.85 0.10 -0.22 16 5 C -0.52 -29.56 8.96 25.60 0.23 -29.33 16 6 H 0.03 2.19 7.30 -2.91 -0.02 2.17 16 7 C 0.00 -0.02 5.47 84.65 0.46 0.44 16 8 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 9 Si 0.95 44.32 27.47 68.60 1.88 46.21 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.25 -10.59 6.54 99.48 0.65 -9.94 16 12 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 13 C 0.07 2.14 5.14 86.30 0.44 2.58 16 14 N -0.69 -16.22 6.50 -513.87 -3.34 -19.56 16 15 C 0.08 1.48 4.86 86.30 0.42 1.90 16 16 C -0.04 -0.83 2.80 -11.10 -0.03 -0.86 16 17 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 18 C -0.07 -1.27 6.13 72.37 0.44 -0.83 16 19 S -0.18 -3.72 23.08 -56.49 -1.30 -5.03 16 20 C -0.10 -1.98 6.48 22.56 0.15 -1.84 16 21 C -0.10 -1.70 10.05 22.36 0.22 -1.48 16 22 C -0.10 -1.32 10.08 22.24 0.22 -1.10 16 23 C -0.12 -1.60 10.00 22.16 0.22 -1.38 16 24 C -0.10 -1.70 9.43 22.47 0.21 -1.49 16 25 C -0.11 -2.12 5.56 -19.33 -0.11 -2.23 16 26 H 0.03 1.42 6.95 -2.38 -0.02 1.40 16 27 H 0.07 1.85 6.68 -2.39 -0.02 1.83 16 28 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.02 0.68 7.57 -2.39 -0.02 0.66 16 30 H 0.02 0.80 7.20 -2.39 -0.02 0.79 16 31 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 32 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.34 7.39 6.11 -89.69 -0.55 6.84 16 35 H 0.08 1.55 6.86 -2.39 -0.02 1.54 16 36 H 0.03 0.67 8.01 -2.39 -0.02 0.65 16 37 H 0.10 1.65 7.84 -2.39 -0.02 1.63 16 38 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 40 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 41 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 42 H 0.13 1.90 7.02 -2.91 -0.02 1.88 16 Total: -1.00 -67.34 344.44 1.53 -65.81 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.40 Total: 14.98 kcal Atomic # 6 Polarization: -45.98 SS G_CDS: 3.60 Total: -42.38 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -3.04 Total: -79.59 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.88 Total: 46.21 kcal Atomic # 16 Polarization: -3.72 SS G_CDS: -1.30 Total: -5.03 kcal Total: -67.34 1.53 -65.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602672123.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.749 kcal (2) G-P(sol) polarization free energy of solvation -67.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds