Wall clock time and date at job start Tue Mar 31 2020 06:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47405 * 2 1 4 4 H 1.09003 * 109.74482 * 299.90727 * 3 2 1 5 5 C 1.52254 * 109.61308 * 179.48024 * 3 2 1 6 6 C 1.39010 * 124.27820 * 42.92131 * 5 3 2 7 7 C 1.33017 * 115.66253 * 180.02562 * 6 5 3 8 8 S 1.75787 * 109.60564 * 359.97438 * 7 6 5 9 9 C 1.34802 * 122.07115 * 222.93879 * 5 3 2 10 10 C 1.51410 * 123.96300 * 359.88300 * 9 5 3 11 11 C 1.53351 * 108.07187 * 344.47092 * 10 9 5 12 12 N 1.46905 * 109.61177 * 60.32369 * 3 2 1 13 13 C 1.46905 * 110.99416 * 48.21581 * 12 3 2 14 14 C 1.53007 * 109.47023 * 201.75301 * 13 12 3 15 15 C 1.50697 * 115.54848 * 147.52610 * 14 13 12 16 16 H 1.08001 * 119.99866 * 145.97861 * 15 14 13 17 17 C 1.37881 * 120.00027 * 325.97680 * 15 14 13 18 18 N 1.31509 * 119.99947 * 339.72068 * 17 15 14 19 19 Si 1.86805 * 119.99927 * 159.72075 * 17 15 14 20 20 H 1.48500 * 109.46953 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46698 * 119.99796 * 19 17 15 22 22 H 1.48495 * 109.47018 * 239.99962 * 19 17 15 23 23 C 1.52999 * 117.49565 * 1.82159 * 14 13 12 24 24 C 1.52998 * 117.49535 * 293.19841 * 14 13 12 25 25 H 1.09007 * 109.46912 * 300.00062 * 1 2 3 26 26 H 1.08999 * 109.47067 * 59.99778 * 1 2 3 27 27 H 1.08996 * 109.47254 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47218 * 239.99624 * 2 1 3 29 29 H 1.08999 * 109.47067 * 120.00222 * 2 1 3 30 30 H 1.07998 * 122.16767 * 0.09000 * 6 5 3 31 31 H 1.07996 * 125.19981 * 179.97438 * 7 6 5 32 32 H 1.09001 * 109.73681 * 224.83394 * 10 9 5 33 33 H 1.08999 * 109.78213 * 104.14421 * 10 9 5 34 34 H 1.09000 * 109.53655 * 288.96310 * 11 10 9 35 35 H 1.08995 * 109.53925 * 168.72402 * 11 10 9 36 36 H 1.09001 * 109.47249 * 321.75605 * 13 12 3 37 37 H 1.08999 * 109.47353 * 81.75368 * 13 12 3 38 38 H 0.97009 * 120.00339 * 184.95526 * 18 17 15 39 39 H 1.08996 * 117.50180 * 359.97438 * 23 14 13 40 40 H 1.08994 * 117.49739 * 145.01983 * 23 14 13 41 41 H 1.09005 * 117.49082 * 214.97644 * 24 14 13 42 42 H 1.08990 * 117.50435 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6806 1.9602 -0.8893 5 6 3.5625 1.4462 0.0130 6 6 4.3542 0.6046 -0.7599 7 6 5.6677 0.7537 -0.6131 8 16 5.9897 2.0219 0.5609 9 6 4.2696 2.2865 0.7947 10 6 3.6441 3.3025 1.7269 11 6 2.1709 3.4655 1.3335 12 7 1.5585 2.1357 1.2023 13 6 1.7935 1.3269 2.4059 14 6 0.8430 1.7777 3.5169 15 6 0.3893 0.6958 4.4628 16 1 0.2142 0.9267 5.5032 17 6 0.1979 -0.5888 4.0000 18 7 0.0159 -0.8047 2.7156 19 14 0.1970 -2.0226 5.1975 20 1 0.4202 -1.5165 6.5757 21 1 -1.1122 -2.7205 5.1330 22 1 1.2815 -2.9702 4.8358 23 6 -0.1533 2.8906 3.1858 24 6 1.0444 3.1808 4.0927 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.9301 -0.1225 -1.4366 31 1 6.4213 0.1830 -1.1352 32 1 4.1592 4.2581 1.6290 33 1 3.7136 2.9506 2.7562 34 1 2.1040 3.9929 0.3820 35 1 1.6486 4.0329 2.1036 36 1 1.6141 0.2761 2.1783 37 1 2.8245 1.4564 2.7351 38 1 -0.1902 -1.6980 2.3983 39 1 -0.1313 3.3020 2.1767 40 1 -1.1372 2.8404 3.6520 41 1 0.8483 3.3214 5.1557 42 1 1.8541 3.7826 3.6804 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602762473.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:59 Heat of formation + Delta-G solvation = 86.822226 kcal Electronic energy + Delta-G solvation = -22815.088472 eV Core-core repulsion = 19888.450277 eV Total energy + Delta-G solvation = -2926.638195 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -40.00916 -36.92049 -34.72832 -33.56661 -32.03605 -29.87391 -28.23179 -26.78380 -25.36760 -23.85520 -23.06737 -20.98501 -20.81083 -20.21600 -18.82360 -17.51023 -16.76591 -16.29752 -15.48015 -14.80491 -14.57534 -14.50673 -13.97381 -13.56466 -13.20542 -12.70472 -12.67076 -12.60692 -12.37330 -11.66385 -11.52715 -11.39978 -11.25275 -11.06830 -10.93931 -10.90543 -10.62916 -10.44428 -10.34500 -10.18569 -10.09753 -9.74856 -9.46056 -9.10244 -9.01892 -8.53588 -8.30114 -8.03756 -7.81502 -7.36433 -5.99355 -3.98612 1.25765 1.87504 2.23394 2.98351 3.26773 3.37438 3.42239 4.39284 4.71282 5.02368 5.06929 5.14546 5.38189 5.49075 5.52663 5.67311 5.77947 5.81377 5.96012 5.96154 6.15425 6.22828 6.25773 6.31364 6.40442 6.53324 6.55616 6.59383 6.72078 6.76513 6.82918 6.85830 7.01175 7.09320 7.13829 7.20363 7.32198 7.54656 7.68841 7.91976 8.01674 8.05590 8.21489 8.58445 8.93859 9.55379 10.96894 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016517 B = 0.006568 C = 0.006083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.849767 B = 4262.302772 C = 4601.846823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.104 4.104 3 C 0.150 3.850 4 H 0.080 0.920 5 C -0.131 4.131 6 C -0.113 4.113 7 C -0.226 4.226 8 S 0.065 5.935 9 C -0.167 4.167 10 C -0.087 4.087 11 C 0.044 3.956 12 N -0.506 5.506 13 C 0.064 3.936 14 C 0.065 3.935 15 C -0.492 4.492 16 H 0.058 0.942 17 C 0.074 3.926 18 N -0.855 5.855 19 Si 0.879 3.121 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.283 1.283 23 C -0.189 4.189 24 C -0.233 4.233 25 H 0.109 0.891 26 H 0.018 0.982 27 H 0.037 0.963 28 H 0.040 0.960 29 H 0.080 0.920 30 H 0.136 0.864 31 H 0.158 0.842 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.140 0.860 37 H 0.012 0.988 38 H 0.260 0.740 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.717 4.117 -7.533 11.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.142 4.142 3 C 0.039 3.961 4 H 0.098 0.902 5 C -0.144 4.144 6 C -0.144 4.144 7 C -0.361 4.361 8 S 0.331 5.669 9 C -0.284 4.284 10 C -0.127 4.127 11 C -0.086 4.086 12 N -0.226 5.226 13 C -0.062 4.062 14 C 0.064 3.936 15 C -0.529 4.529 16 H 0.076 0.924 17 C -0.129 4.129 18 N -0.492 5.492 19 Si 0.707 3.293 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.209 1.209 23 C -0.227 4.227 24 C -0.270 4.270 25 H 0.127 0.873 26 H 0.037 0.963 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.153 0.847 31 H 0.176 0.824 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.117 0.883 36 H 0.157 0.843 37 H 0.030 0.970 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.588 4.629 -7.130 12.084 hybrid contribution -0.104 -1.510 0.100 1.517 sum 8.484 3.119 -7.031 11.452 Atomic orbital electron populations 1.21625 0.93754 1.00779 1.02438 1.21565 0.98234 0.93399 1.00975 1.20833 0.84587 0.96447 0.94277 0.90232 1.20708 0.99423 0.96475 0.97836 1.20019 0.92414 1.00741 1.01256 1.25256 0.99767 1.05101 1.05929 1.83904 1.06702 1.35221 1.41098 1.24763 0.94761 1.04236 1.04652 1.21017 0.98054 0.95627 0.98042 1.22637 0.90383 0.93767 1.01824 1.62330 1.54954 1.02016 1.03292 1.22294 0.94444 1.02185 0.87242 1.18897 0.95003 0.85786 0.93911 1.20556 1.45701 0.92148 0.94539 0.92371 1.24943 0.94478 0.98436 0.95064 1.69991 1.45003 1.21472 1.12699 0.86747 0.77572 0.82901 0.82063 1.19907 1.21205 1.20934 1.22946 0.93056 1.08763 0.97933 1.23167 1.01292 1.04894 0.97654 0.87251 0.96325 0.94429 0.94124 0.90165 0.84660 0.82395 0.91077 0.89358 0.91936 0.88339 0.84320 0.97033 0.92933 0.89699 0.91664 0.91519 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.27 37.16 0.31 -2.17 16 2 C -0.10 -1.89 4.55 -26.73 -0.12 -2.01 16 3 C 0.15 2.63 2.56 -68.09 -0.17 2.46 16 4 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 5 C -0.13 -2.19 5.08 -104.78 -0.53 -2.73 16 6 C -0.11 -1.69 9.44 -41.11 -0.39 -2.08 16 7 C -0.23 -3.09 11.21 28.92 0.32 -2.76 16 8 S 0.07 0.93 23.32 -107.50 -2.51 -1.57 16 9 C -0.17 -2.75 5.82 -35.18 -0.20 -2.95 16 10 C -0.09 -1.38 5.41 -27.35 -0.15 -1.53 16 11 C 0.04 0.73 4.76 -3.60 -0.02 0.71 16 12 N -0.51 -9.58 2.93 -226.80 -0.66 -10.24 16 13 C 0.06 1.41 3.72 -3.82 -0.01 1.40 16 14 C 0.06 1.53 2.35 -155.66 -0.37 1.17 16 15 C -0.49 -12.95 9.00 -34.44 -0.31 -13.26 16 16 H 0.06 1.57 7.90 -52.49 -0.41 1.16 16 17 C 0.07 1.89 4.99 -17.82 -0.09 1.80 16 18 N -0.85 -21.33 7.88 55.43 0.44 -20.89 16 19 Si 0.88 20.19 29.59 -169.99 -5.03 15.16 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C -0.19 -4.19 9.08 -26.73 -0.24 -4.43 16 24 C -0.23 -4.93 9.23 -26.73 -0.25 -5.18 16 25 H 0.11 2.48 5.78 -51.92 -0.30 2.18 16 26 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.04 0.65 7.23 -51.93 -0.38 0.27 16 29 H 0.08 1.68 5.63 -51.93 -0.29 1.39 16 30 H 0.14 1.81 7.29 -52.49 -0.38 1.42 16 31 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.09 1.55 6.19 -51.93 -0.32 1.22 16 34 H 0.06 0.96 8.06 -51.93 -0.42 0.54 16 35 H 0.10 1.68 4.03 -51.93 -0.21 1.47 16 36 H 0.14 3.31 2.02 -51.93 -0.10 3.20 16 37 H 0.01 0.26 5.11 -51.93 -0.27 0.00 16 38 H 0.26 6.28 8.32 -40.82 -0.34 5.94 16 39 H 0.08 1.79 5.84 -51.93 -0.30 1.49 16 40 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.07 1.32 5.10 -51.93 -0.26 1.06 16 LS Contribution 315.92 15.07 4.76 4.76 Total: -1.00 -25.24 315.92 -10.97 -36.21 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -5.75 Total: 8.13 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: -2.22 Total: -31.56 kcal Atomic # 7 Polarization: -30.90 SS G_CDS: -0.23 Total: -31.13 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.16 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.51 Total: -1.57 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -25.24 -10.97 -36.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602762473.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.036 kcal (2) G-P(sol) polarization free energy of solvation -25.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds