Wall clock time and date at job start Tue Mar 31 2020 06:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47405 * 2 1 4 4 H 1.09003 * 109.74482 * 299.90727 * 3 2 1 5 5 C 1.52254 * 109.61308 * 179.48024 * 3 2 1 6 6 C 1.39010 * 124.27820 * 42.92131 * 5 3 2 7 7 C 1.33017 * 115.66253 * 180.02562 * 6 5 3 8 8 S 1.75787 * 109.60564 * 359.97438 * 7 6 5 9 9 C 1.34802 * 122.07115 * 222.93879 * 5 3 2 10 10 C 1.51410 * 123.96300 * 359.88300 * 9 5 3 11 11 C 1.53351 * 108.07187 * 344.47092 * 10 9 5 12 12 N 1.46905 * 109.61177 * 60.32369 * 3 2 1 13 13 C 1.46905 * 110.99416 * 48.21581 * 12 3 2 14 14 C 1.53007 * 109.47023 * 201.75301 * 13 12 3 15 15 C 1.50697 * 115.54848 * 147.52610 * 14 13 12 16 16 H 1.08001 * 119.99866 * 145.97861 * 15 14 13 17 17 C 1.37881 * 120.00027 * 325.97680 * 15 14 13 18 18 N 1.31509 * 119.99947 * 339.72068 * 17 15 14 19 19 Si 1.86805 * 119.99927 * 159.72075 * 17 15 14 20 20 H 1.48500 * 109.46953 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46698 * 119.99796 * 19 17 15 22 22 H 1.48495 * 109.47018 * 239.99962 * 19 17 15 23 23 C 1.52999 * 117.49565 * 1.82159 * 14 13 12 24 24 C 1.52998 * 117.49535 * 293.19841 * 14 13 12 25 25 H 1.09007 * 109.46912 * 300.00062 * 1 2 3 26 26 H 1.08999 * 109.47067 * 59.99778 * 1 2 3 27 27 H 1.08996 * 109.47254 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47218 * 239.99624 * 2 1 3 29 29 H 1.08999 * 109.47067 * 120.00222 * 2 1 3 30 30 H 1.07998 * 122.16767 * 0.09000 * 6 5 3 31 31 H 1.07996 * 125.19981 * 179.97438 * 7 6 5 32 32 H 1.09001 * 109.73681 * 224.83394 * 10 9 5 33 33 H 1.08999 * 109.78213 * 104.14421 * 10 9 5 34 34 H 1.09000 * 109.53655 * 288.96310 * 11 10 9 35 35 H 1.08995 * 109.53925 * 168.72402 * 11 10 9 36 36 H 1.09001 * 109.47249 * 321.75605 * 13 12 3 37 37 H 1.08999 * 109.47353 * 81.75368 * 13 12 3 38 38 H 0.97009 * 120.00339 * 184.95526 * 18 17 15 39 39 H 1.08996 * 117.50180 * 359.97438 * 23 14 13 40 40 H 1.08994 * 117.49739 * 145.01983 * 23 14 13 41 41 H 1.09005 * 117.49082 * 214.97644 * 24 14 13 42 42 H 1.08990 * 117.50435 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6806 1.9602 -0.8893 5 6 3.5625 1.4462 0.0130 6 6 4.3542 0.6046 -0.7599 7 6 5.6677 0.7537 -0.6131 8 16 5.9897 2.0219 0.5609 9 6 4.2696 2.2865 0.7947 10 6 3.6441 3.3025 1.7269 11 6 2.1709 3.4655 1.3335 12 7 1.5585 2.1357 1.2023 13 6 1.7935 1.3269 2.4059 14 6 0.8430 1.7777 3.5169 15 6 0.3893 0.6958 4.4628 16 1 0.2142 0.9267 5.5032 17 6 0.1979 -0.5888 4.0000 18 7 0.0159 -0.8047 2.7156 19 14 0.1970 -2.0226 5.1975 20 1 0.4202 -1.5165 6.5757 21 1 -1.1122 -2.7205 5.1330 22 1 1.2815 -2.9702 4.8358 23 6 -0.1533 2.8906 3.1858 24 6 1.0444 3.1808 4.0927 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.9301 -0.1225 -1.4366 31 1 6.4213 0.1830 -1.1352 32 1 4.1592 4.2581 1.6290 33 1 3.7136 2.9506 2.7562 34 1 2.1040 3.9929 0.3820 35 1 1.6486 4.0329 2.1036 36 1 1.6141 0.2761 2.1783 37 1 2.8245 1.4564 2.7351 38 1 -0.1902 -1.6980 2.3983 39 1 -0.1313 3.3020 2.1767 40 1 -1.1372 2.8404 3.6520 41 1 0.8483 3.3214 5.1557 42 1 1.8541 3.7826 3.6804 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602762473.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:58 Heat of formation + Delta-G solvation = 76.528551 kcal Electronic energy + Delta-G solvation = -22815.534839 eV Core-core repulsion = 19888.450277 eV Total energy + Delta-G solvation = -2927.084563 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.39624 -38.41914 -36.17824 -35.05110 -33.86973 -31.25686 -29.53349 -28.42315 -27.19336 -25.30025 -24.31269 -22.72861 -22.14131 -21.72465 -20.45247 -18.90821 -18.09540 -17.88904 -17.01541 -16.42763 -16.19513 -15.91177 -15.31897 -15.10743 -14.78747 -14.15855 -13.98065 -13.93487 -13.73310 -13.33790 -13.12745 -12.88300 -12.79257 -12.63766 -12.52094 -12.30689 -12.20811 -12.12115 -11.97073 -11.78234 -11.53239 -11.25458 -11.09018 -10.89204 -10.83441 -10.35229 -9.66185 -9.43740 -9.18730 -8.84219 -7.92482 -5.98254 0.10894 0.75004 1.10500 1.40945 1.47763 1.55759 1.81021 2.48068 3.03753 3.37101 3.81747 3.84970 3.95872 4.15328 4.16007 4.37878 4.44511 4.51752 4.58059 4.60771 4.77383 4.79481 4.80996 4.90754 4.91211 4.99540 5.03633 5.15106 5.20657 5.28443 5.36341 5.40497 5.47776 5.49227 5.54312 5.63002 5.68397 5.77787 5.81666 6.28116 6.29242 6.41775 6.62959 6.72597 6.96144 7.56022 9.00072 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016517 B = 0.006568 C = 0.006083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.849767 B = 4262.302772 C = 4601.846823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.095 4.095 3 C 0.151 3.849 4 H 0.091 0.909 5 C -0.142 4.142 6 C -0.131 4.131 7 C -0.215 4.215 8 S 0.087 5.913 9 C -0.193 4.193 10 C -0.081 4.081 11 C 0.044 3.956 12 N -0.514 5.514 13 C 0.083 3.917 14 C 0.040 3.960 15 C -0.526 4.526 16 H 0.038 0.962 17 C 0.044 3.956 18 N -0.853 5.853 19 Si 0.929 3.071 20 H -0.281 1.281 21 H -0.283 1.283 22 H -0.280 1.280 23 C -0.182 4.182 24 C -0.215 4.215 25 H 0.075 0.925 26 H 0.035 0.965 27 H 0.030 0.970 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.150 0.850 31 H 0.189 0.811 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.122 0.878 37 H -0.001 1.001 38 H 0.261 0.739 39 H 0.096 0.904 40 H 0.047 0.953 41 H 0.059 0.941 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.163 4.262 -9.103 13.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.133 4.133 3 C 0.040 3.960 4 H 0.108 0.892 5 C -0.156 4.156 6 C -0.162 4.162 7 C -0.350 4.350 8 S 0.353 5.647 9 C -0.310 4.310 10 C -0.122 4.122 11 C -0.085 4.085 12 N -0.234 5.234 13 C -0.044 4.044 14 C 0.039 3.961 15 C -0.563 4.563 16 H 0.056 0.944 17 C -0.160 4.160 18 N -0.488 5.488 19 Si 0.756 3.244 20 H -0.206 1.206 21 H -0.209 1.209 22 H -0.206 1.206 23 C -0.220 4.220 24 C -0.252 4.252 25 H 0.094 0.906 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.168 0.832 31 H 0.206 0.794 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.139 0.861 37 H 0.017 0.983 38 H 0.071 0.929 39 H 0.115 0.885 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.033 4.783 -8.710 14.121 hybrid contribution -0.538 -1.561 0.565 1.745 sum 9.496 3.222 -8.145 12.918 Atomic orbital electron populations 1.21454 0.94623 1.00044 1.01507 1.21441 0.97273 0.94020 1.00559 1.20786 0.85634 0.95786 0.93785 0.89154 1.20726 0.98906 0.97234 0.98706 1.20158 0.92864 1.01253 1.01903 1.25672 1.00045 1.04362 1.04943 1.83816 1.04746 1.35219 1.40957 1.24913 0.96334 1.04735 1.05037 1.20913 0.97733 0.96692 0.96823 1.22635 0.90825 0.92513 1.02545 1.62226 1.55896 1.02653 1.02639 1.21909 0.92997 1.01621 0.87870 1.19005 0.96260 0.86085 0.94782 1.20709 1.47492 0.93869 0.94246 0.94355 1.25401 0.94369 0.99745 0.96437 1.70101 1.44054 1.21629 1.13037 0.85982 0.77482 0.80681 0.80215 1.20639 1.20925 1.20626 1.22836 0.92306 1.08332 0.98561 1.23160 1.01305 1.03565 0.97197 0.90649 0.94603 0.95044 0.91762 0.93157 0.83237 0.79400 0.88836 0.91359 0.90258 0.88898 0.86100 0.98317 0.92875 0.88537 0.93451 0.92225 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.51 8.27 71.98 0.60 -3.91 16 2 C -0.10 -3.37 4.55 30.59 0.14 -3.23 16 3 C 0.15 5.09 2.56 44.67 0.11 5.21 16 4 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 5 C -0.14 -4.49 5.08 -19.97 -0.10 -4.59 16 6 C -0.13 -3.59 9.44 21.29 0.20 -3.39 16 7 C -0.22 -5.20 11.21 66.66 0.75 -4.45 16 8 S 0.09 2.27 23.32 -56.49 -1.32 0.95 16 9 C -0.19 -6.00 5.82 25.12 0.15 -5.86 16 10 C -0.08 -2.46 5.41 30.19 0.16 -2.30 16 11 C 0.04 1.41 4.76 86.40 0.41 1.82 16 12 N -0.51 -19.11 2.93 -871.46 -2.55 -21.67 16 13 C 0.08 3.67 3.72 86.30 0.32 3.99 16 14 C 0.04 1.90 2.35 -52.93 -0.12 1.78 16 15 C -0.53 -28.49 9.00 25.60 0.23 -28.26 16 16 H 0.04 2.16 7.90 -2.91 -0.02 2.13 16 17 C 0.04 2.28 4.99 84.66 0.42 2.70 16 18 N -0.85 -43.17 7.88 21.45 0.17 -43.00 16 19 Si 0.93 42.10 29.59 68.60 2.03 44.13 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 C -0.18 -8.16 9.08 30.60 0.28 -7.89 16 24 C -0.22 -9.13 9.23 30.60 0.28 -8.85 16 25 H 0.07 3.43 5.78 -2.38 -0.01 3.42 16 26 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.06 1.94 7.23 -2.39 -0.02 1.92 16 29 H 0.05 2.11 5.63 -2.39 -0.01 2.09 16 30 H 0.15 3.56 7.29 -2.91 -0.02 3.54 16 31 H 0.19 3.30 8.06 -2.91 -0.02 3.28 16 32 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.07 2.35 6.19 -2.39 -0.01 2.34 16 34 H 0.08 2.26 8.06 -2.39 -0.02 2.24 16 35 H 0.09 3.04 4.03 -2.39 -0.01 3.03 16 36 H 0.12 5.86 2.02 -2.39 0.00 5.85 16 37 H 0.00 -0.05 5.11 -2.39 -0.01 -0.07 16 38 H 0.26 12.72 8.32 -92.70 -0.77 11.95 16 39 H 0.10 4.05 5.84 -2.39 -0.01 4.04 16 40 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.06 2.58 8.14 -2.38 -0.02 2.56 16 42 H 0.09 3.48 5.10 -2.39 -0.01 3.47 16 Total: -1.00 -54.46 315.92 3.19 -51.26 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 1.03 Total: 25.54 kcal Atomic # 6 Polarization: -61.05 SS G_CDS: 3.83 Total: -57.23 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: -2.38 Total: -64.67 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -1.32 Total: 0.95 kcal Total: -54.46 3.19 -51.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602762473.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.793 kcal (2) G-P(sol) polarization free energy of solvation -54.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds