Wall clock time and date at job start Tue Mar 31 2020 06:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46857 * 2 1 4 4 H 1.09010 * 109.60508 * 175.67464 * 3 2 1 5 5 C 1.52253 * 109.75302 * 296.10141 * 3 2 1 6 6 C 1.39020 * 124.27526 * 317.18955 * 5 3 2 7 7 C 1.33015 * 115.65994 * 179.88133 * 6 5 3 8 8 S 1.75784 * 109.60764 * 0.07710 * 7 6 5 9 9 C 1.34793 * 122.07883 * 137.18277 * 5 3 2 10 10 C 1.51415 * 123.95660 * 0.08269 * 9 5 3 11 11 C 1.53352 * 108.07444 * 15.53466 * 10 9 5 12 12 N 1.46896 * 109.61534 * 55.33556 * 3 2 1 13 13 C 1.46901 * 111.00002 * 63.24779 * 12 3 2 14 14 C 1.53002 * 109.46978 * 193.79779 * 13 12 3 15 15 C 1.50707 * 115.54622 * 292.61622 * 14 13 12 16 16 H 1.07999 * 119.99545 * 114.83438 * 15 14 13 17 17 C 1.37876 * 120.00108 * 294.82876 * 15 14 13 18 18 N 1.31516 * 119.99938 * 153.73210 * 17 15 14 19 19 Si 1.86797 * 120.00069 * 333.73690 * 17 15 14 20 20 H 1.48499 * 109.47460 * 88.55340 * 19 17 15 21 21 H 1.48507 * 109.47236 * 208.55285 * 19 17 15 22 22 H 1.48498 * 109.47208 * 328.54879 * 19 17 15 23 23 C 1.53005 * 117.50089 * 146.95133 * 14 13 12 24 24 C 1.53000 * 117.50408 * 78.28905 * 14 13 12 25 25 H 1.08995 * 109.46989 * 65.20867 * 1 2 3 26 26 H 1.09003 * 109.47213 * 185.20694 * 1 2 3 27 27 H 1.08994 * 109.47347 * 305.20991 * 1 2 3 28 28 H 1.08994 * 109.47382 * 240.00018 * 2 1 3 29 29 H 1.09008 * 109.47248 * 119.99157 * 2 1 3 30 30 H 1.08004 * 122.16411 * 359.93926 * 6 5 3 31 31 H 1.08001 * 125.19595 * 180.02562 * 7 6 5 32 32 H 1.09004 * 109.73824 * 255.89191 * 10 9 5 33 33 H 1.09000 * 109.74263 * 135.18638 * 10 9 5 34 34 H 1.09003 * 109.53207 * 71.04930 * 11 10 9 35 35 H 1.08994 * 109.53578 * 191.28179 * 11 10 9 36 36 H 1.09005 * 109.47097 * 313.79085 * 13 12 3 37 37 H 1.08995 * 109.47042 * 73.79705 * 13 12 3 38 38 H 0.97000 * 120.00270 * 180.02562 * 18 17 15 39 39 H 1.08997 * 117.49643 * 359.97438 * 23 14 13 40 40 H 1.09002 * 117.49879 * 145.01673 * 23 14 13 41 41 H 1.09004 * 117.49997 * 214.97860 * 24 14 13 42 42 H 1.09001 * 117.49607 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1272 1.4461 0.0774 5 6 1.6170 2.1378 -1.2868 6 6 1.6780 1.5556 -2.5478 7 6 1.2621 2.3183 -3.5551 8 16 0.7504 3.8828 -2.9382 9 6 1.1412 3.3989 -1.2961 10 6 0.9781 4.2505 -0.0547 11 6 1.7857 3.6023 1.0764 12 7 1.4622 2.1698 1.1381 13 6 1.9000 1.5857 2.4130 14 6 1.0297 2.1289 3.5482 15 6 1.1925 3.5971 3.8465 16 1 0.3690 4.2761 3.6818 17 6 2.3928 4.0735 4.3296 18 7 2.7382 5.3242 4.1149 19 14 3.5284 2.9425 5.2891 20 1 4.4360 2.2380 4.3482 21 1 4.3328 3.7442 6.2459 22 1 2.7193 1.9462 6.0360 23 6 0.7427 1.1961 4.7266 24 6 -0.3645 1.5231 3.7215 25 1 -0.3633 0.4309 -0.9329 26 1 -0.3634 -1.0234 0.0933 27 1 -0.3634 0.5925 0.8396 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 2.0388 0.5490 -2.6994 31 1 1.2427 2.0219 -4.5934 32 1 -0.0746 4.2968 0.2243 33 1 1.3535 5.2558 -0.2459 34 1 2.8508 3.7273 0.8816 35 1 1.5294 4.0750 2.0244 36 1 1.8029 0.5010 2.3680 37 1 2.9415 1.8502 2.5952 38 1 3.5828 5.6593 4.4545 39 1 1.1736 0.1955 4.6930 40 1 0.6713 1.6445 5.7176 41 1 -1.1640 2.1865 4.0517 42 1 -0.6620 0.7379 3.0265 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602762474.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:10 Heat of formation + Delta-G solvation = 67.926751 kcal Electronic energy + Delta-G solvation = -22416.060082 eV Core-core repulsion = 19488.602517 eV Total energy + Delta-G solvation = -2927.457565 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 5.40 seconds Orbital eigenvalues (eV) -39.50441 -37.13927 -35.08269 -33.48924 -32.26037 -30.82397 -28.12180 -26.39380 -25.66349 -24.06198 -23.09335 -21.43175 -20.93687 -20.29624 -18.79811 -17.29808 -16.85993 -16.26671 -15.66134 -15.03870 -14.51607 -14.19385 -14.08053 -13.76151 -13.41715 -12.96297 -12.78592 -12.55319 -12.45170 -12.18512 -11.97756 -11.84911 -11.32919 -11.23841 -11.08449 -10.87550 -10.82612 -10.70435 -10.54028 -10.33652 -10.15012 -9.96498 -9.74449 -9.47096 -9.00006 -8.59390 -8.24512 -8.15629 -8.00241 -7.40745 -6.28219 -4.08283 1.31923 1.91372 2.28279 2.99012 3.25265 3.37091 3.46115 4.39108 4.47762 4.93144 5.03842 5.22559 5.28715 5.35470 5.44729 5.59728 5.70734 5.76599 5.84437 5.91444 6.05414 6.07567 6.16134 6.21148 6.23424 6.26019 6.32686 6.42226 6.44554 6.52759 6.60860 6.62326 6.69932 6.79297 6.85024 6.93402 6.94426 7.15869 7.24569 7.50158 7.72723 7.96247 8.13377 8.48955 8.84466 9.43393 10.81342 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020128 B = 0.006069 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.759417 B = 4612.679498 C = 5278.515853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C 0.142 3.858 4 H 0.040 0.960 5 C -0.104 4.104 6 C -0.114 4.114 7 C -0.231 4.231 8 S 0.067 5.933 9 C -0.146 4.146 10 C -0.041 4.041 11 C 0.030 3.970 12 N -0.511 5.511 13 C 0.092 3.908 14 C 0.013 3.987 15 C -0.492 4.492 16 H 0.080 0.920 17 C 0.088 3.912 18 N -0.872 5.872 19 Si 0.853 3.147 20 H -0.280 1.280 21 H -0.293 1.293 22 H -0.251 1.251 23 C -0.204 4.204 24 C -0.169 4.169 25 H 0.047 0.953 26 H 0.037 0.963 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.132 0.868 31 H 0.157 0.843 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.016 0.984 35 H 0.168 0.832 36 H 0.053 0.947 37 H 0.026 0.974 38 H 0.266 0.734 39 H 0.064 0.936 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.957 -6.981 -10.945 13.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.146 4.146 3 C 0.031 3.969 4 H 0.058 0.942 5 C -0.116 4.116 6 C -0.146 4.146 7 C -0.366 4.366 8 S 0.332 5.668 9 C -0.263 4.263 10 C -0.081 4.081 11 C -0.098 4.098 12 N -0.234 5.234 13 C -0.036 4.036 14 C 0.011 3.989 15 C -0.528 4.528 16 H 0.098 0.902 17 C -0.117 4.117 18 N -0.506 5.506 19 Si 0.679 3.321 20 H -0.206 1.206 21 H -0.220 1.220 22 H -0.174 1.174 23 C -0.243 4.243 24 C -0.206 4.206 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.150 0.850 31 H 0.175 0.825 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.035 0.965 35 H 0.185 0.815 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.910 -5.537 -11.676 13.246 hybrid contribution 2.283 -1.825 0.934 3.068 sum -0.627 -7.362 -10.742 13.038 Atomic orbital electron populations 1.21634 0.94893 1.00100 1.03124 1.21518 0.97576 0.94646 1.00883 1.20498 0.95429 0.92932 0.88034 0.94204 1.19491 1.03627 0.93726 0.94726 1.19888 1.02378 1.00835 0.91459 1.25185 1.10912 0.97863 1.02647 1.83996 1.65885 1.16089 1.00813 1.25153 1.05162 0.98843 0.97191 1.20487 1.02131 0.96132 0.89312 1.23152 0.95446 0.87971 1.03230 1.61787 1.58480 1.02948 1.00230 1.21782 0.96646 0.96311 0.88812 1.19265 0.93781 0.93906 0.91920 1.20036 0.99190 0.89255 1.44280 0.90242 1.24863 0.96982 0.94646 0.95200 1.70078 1.22461 1.16340 1.41744 0.87224 0.80999 0.82280 0.81557 1.20647 1.21974 1.17443 1.23120 1.05585 0.99389 0.96160 1.22641 0.93082 1.02810 1.02105 0.93392 0.94407 0.90338 0.92526 0.91966 0.85044 0.82515 0.89842 0.91014 0.96536 0.81500 0.92845 0.95553 0.92448 0.91751 0.89716 0.90288 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.51 37.16 0.35 -1.70 16 2 C -0.11 -1.57 5.10 -26.73 -0.14 -1.71 16 3 C 0.14 2.41 2.30 -68.09 -0.16 2.25 16 4 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 5 C -0.10 -1.70 4.53 -104.78 -0.47 -2.17 16 6 C -0.11 -1.59 9.25 -41.10 -0.38 -1.97 16 7 C -0.23 -2.99 11.21 28.92 0.32 -2.66 16 8 S 0.07 0.94 23.32 -107.50 -2.51 -1.57 16 9 C -0.15 -2.46 6.42 -35.18 -0.23 -2.68 16 10 C -0.04 -0.74 6.50 -27.35 -0.18 -0.92 16 11 C 0.03 0.62 5.36 -3.60 -0.02 0.60 16 12 N -0.51 -9.80 3.29 -226.81 -0.75 -10.55 16 13 C 0.09 1.88 4.64 -3.82 -0.02 1.86 16 14 C 0.01 0.27 1.02 -155.65 -0.16 0.12 16 15 C -0.49 -12.35 5.95 -34.44 -0.21 -12.55 16 16 H 0.08 2.19 8.02 -52.49 -0.42 1.77 16 17 C 0.09 2.30 5.05 -17.82 -0.09 2.21 16 18 N -0.87 -23.93 13.96 55.43 0.77 -23.16 16 19 Si 0.85 20.16 25.97 -169.99 -4.41 15.75 16 20 H -0.28 -6.65 7.02 56.52 0.40 -6.26 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.25 -5.69 5.55 56.52 0.31 -5.37 16 23 C -0.20 -4.17 7.79 -26.69 -0.21 -4.38 16 24 C -0.17 -3.34 9.96 -26.69 -0.27 -3.61 16 25 H 0.05 0.71 7.38 -51.93 -0.38 0.33 16 26 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 1.31 6.60 -51.93 -0.34 0.97 16 28 H 0.06 0.71 7.04 -51.93 -0.37 0.35 16 29 H 0.06 0.90 6.45 -51.92 -0.34 0.56 16 30 H 0.13 1.58 7.20 -52.48 -0.38 1.20 16 31 H 0.16 1.59 8.06 -52.49 -0.42 1.16 16 32 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.02 0.36 8.06 -51.93 -0.42 -0.06 16 35 H 0.17 4.00 3.71 -51.93 -0.19 3.81 16 36 H 0.05 0.99 5.87 -51.93 -0.30 0.69 16 37 H 0.03 0.59 6.63 -51.93 -0.34 0.25 16 38 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.08 1.80 7.47 -51.93 -0.39 1.42 16 41 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 42 H 0.07 1.32 7.43 -51.93 -0.39 0.94 16 LS Contribution 327.93 15.07 4.94 4.94 Total: -1.00 -25.68 327.93 -10.24 -35.92 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.45 Total: 5.98 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: -1.84 Total: -27.32 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 0.03 Total: -33.70 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.41 Total: 15.75 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.51 Total: -1.57 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -25.68 -10.24 -35.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602762474.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.846 kcal (2) G-P(sol) polarization free energy of solvation -25.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.40 seconds