Wall clock time and date at job start Tue Mar 31 2020 06:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46857 * 2 1 4 4 H 1.09010 * 109.60508 * 175.67464 * 3 2 1 5 5 C 1.52253 * 109.75302 * 296.10141 * 3 2 1 6 6 C 1.39020 * 124.27526 * 317.18955 * 5 3 2 7 7 C 1.33015 * 115.65994 * 179.88133 * 6 5 3 8 8 S 1.75784 * 109.60764 * 0.07710 * 7 6 5 9 9 C 1.34793 * 122.07883 * 137.18277 * 5 3 2 10 10 C 1.51415 * 123.95660 * 0.08269 * 9 5 3 11 11 C 1.53352 * 108.07444 * 15.53466 * 10 9 5 12 12 N 1.46896 * 109.61534 * 55.33556 * 3 2 1 13 13 C 1.46901 * 111.00002 * 63.24779 * 12 3 2 14 14 C 1.53002 * 109.46978 * 193.79779 * 13 12 3 15 15 C 1.50707 * 115.54622 * 292.61622 * 14 13 12 16 16 H 1.07999 * 119.99545 * 114.83438 * 15 14 13 17 17 C 1.37876 * 120.00108 * 294.82876 * 15 14 13 18 18 N 1.31516 * 119.99938 * 153.73210 * 17 15 14 19 19 Si 1.86797 * 120.00069 * 333.73690 * 17 15 14 20 20 H 1.48499 * 109.47460 * 88.55340 * 19 17 15 21 21 H 1.48507 * 109.47236 * 208.55285 * 19 17 15 22 22 H 1.48498 * 109.47208 * 328.54879 * 19 17 15 23 23 C 1.53005 * 117.50089 * 146.95133 * 14 13 12 24 24 C 1.53000 * 117.50408 * 78.28905 * 14 13 12 25 25 H 1.08995 * 109.46989 * 65.20867 * 1 2 3 26 26 H 1.09003 * 109.47213 * 185.20694 * 1 2 3 27 27 H 1.08994 * 109.47347 * 305.20991 * 1 2 3 28 28 H 1.08994 * 109.47382 * 240.00018 * 2 1 3 29 29 H 1.09008 * 109.47248 * 119.99157 * 2 1 3 30 30 H 1.08004 * 122.16411 * 359.93926 * 6 5 3 31 31 H 1.08001 * 125.19595 * 180.02562 * 7 6 5 32 32 H 1.09004 * 109.73824 * 255.89191 * 10 9 5 33 33 H 1.09000 * 109.74263 * 135.18638 * 10 9 5 34 34 H 1.09003 * 109.53207 * 71.04930 * 11 10 9 35 35 H 1.08994 * 109.53578 * 191.28179 * 11 10 9 36 36 H 1.09005 * 109.47097 * 313.79085 * 13 12 3 37 37 H 1.08995 * 109.47042 * 73.79705 * 13 12 3 38 38 H 0.97000 * 120.00270 * 180.02562 * 18 17 15 39 39 H 1.08997 * 117.49643 * 359.97438 * 23 14 13 40 40 H 1.09002 * 117.49879 * 145.01673 * 23 14 13 41 41 H 1.09004 * 117.49997 * 214.97860 * 24 14 13 42 42 H 1.09001 * 117.49607 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1272 1.4461 0.0774 5 6 1.6170 2.1378 -1.2868 6 6 1.6780 1.5556 -2.5478 7 6 1.2621 2.3183 -3.5551 8 16 0.7504 3.8828 -2.9382 9 6 1.1412 3.3989 -1.2961 10 6 0.9781 4.2505 -0.0547 11 6 1.7857 3.6023 1.0764 12 7 1.4622 2.1698 1.1381 13 6 1.9000 1.5857 2.4130 14 6 1.0297 2.1289 3.5482 15 6 1.1925 3.5971 3.8465 16 1 0.3690 4.2761 3.6818 17 6 2.3928 4.0735 4.3296 18 7 2.7382 5.3242 4.1149 19 14 3.5284 2.9425 5.2891 20 1 4.4360 2.2380 4.3482 21 1 4.3328 3.7442 6.2459 22 1 2.7193 1.9462 6.0360 23 6 0.7427 1.1961 4.7266 24 6 -0.3645 1.5231 3.7215 25 1 -0.3633 0.4309 -0.9329 26 1 -0.3634 -1.0234 0.0933 27 1 -0.3634 0.5925 0.8396 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 2.0388 0.5490 -2.6994 31 1 1.2427 2.0219 -4.5934 32 1 -0.0746 4.2968 0.2243 33 1 1.3535 5.2558 -0.2459 34 1 2.8508 3.7273 0.8816 35 1 1.5294 4.0750 2.0244 36 1 1.8029 0.5010 2.3680 37 1 2.9415 1.8502 2.5952 38 1 3.5828 5.6593 4.4545 39 1 1.1736 0.1955 4.6930 40 1 0.6713 1.6445 5.7176 41 1 -1.1640 2.1865 4.0517 42 1 -0.6620 0.7379 3.0265 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602762474.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:04 Heat of formation + Delta-G solvation = 55.619233 kcal Electronic energy + Delta-G solvation = -22416.593776 eV Core-core repulsion = 19488.602517 eV Total energy + Delta-G solvation = -2927.991259 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.88317 -38.67972 -36.47452 -34.87393 -34.19486 -32.17939 -29.41368 -28.05510 -27.39769 -25.38867 -24.43226 -23.06584 -22.29431 -21.61589 -20.57358 -18.66358 -18.25533 -17.88725 -16.98845 -16.79251 -15.96381 -15.60586 -15.50432 -15.27417 -14.89451 -14.59370 -14.32493 -14.06606 -13.82187 -13.58683 -13.34396 -13.24019 -12.94716 -12.80515 -12.62597 -12.34017 -12.10503 -12.08737 -11.93790 -11.92599 -11.82417 -11.51050 -11.20785 -11.11825 -10.76672 -10.34892 -10.05555 -9.38619 -9.23687 -8.94932 -8.31405 -6.11174 0.17031 0.77144 1.16409 1.33794 1.42294 1.53870 1.83832 2.41771 2.90057 3.04137 3.62726 3.82631 3.94854 4.11397 4.21103 4.27349 4.39961 4.41356 4.47912 4.50140 4.56236 4.66120 4.70855 4.74796 4.82915 4.88133 4.95991 5.02373 5.07976 5.18092 5.21749 5.22624 5.27493 5.37230 5.46319 5.52816 5.60314 5.67408 5.73010 5.75987 5.81922 6.33580 6.43527 6.59939 6.81099 7.40151 8.81564 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020128 B = 0.006069 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.759417 B = 4612.679498 C = 5278.515853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.103 4.103 3 C 0.136 3.864 4 H 0.028 0.972 5 C -0.104 4.104 6 C -0.127 4.127 7 C -0.211 4.211 8 S 0.086 5.914 9 C -0.186 4.186 10 C -0.033 4.033 11 C 0.037 3.963 12 N -0.507 5.507 13 C 0.100 3.900 14 C -0.013 4.013 15 C -0.477 4.477 16 H 0.039 0.961 17 C 0.045 3.955 18 N -0.914 5.914 19 Si 0.900 3.100 20 H -0.281 1.281 21 H -0.300 1.300 22 H -0.230 1.230 23 C -0.195 4.195 24 C -0.153 4.153 25 H 0.043 0.957 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.158 0.842 31 H 0.193 0.807 32 H 0.074 0.926 33 H 0.069 0.931 34 H -0.008 1.008 35 H 0.134 0.866 36 H 0.079 0.921 37 H 0.000 1.000 38 H 0.263 0.737 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.287 -10.287 -12.899 16.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.140 4.140 3 C 0.026 3.974 4 H 0.046 0.954 5 C -0.117 4.117 6 C -0.157 4.157 7 C -0.346 4.346 8 S 0.351 5.649 9 C -0.303 4.303 10 C -0.073 4.073 11 C -0.092 4.092 12 N -0.230 5.230 13 C -0.028 4.028 14 C -0.014 4.014 15 C -0.514 4.514 16 H 0.057 0.943 17 C -0.156 4.156 18 N -0.552 5.552 19 Si 0.725 3.275 20 H -0.207 1.207 21 H -0.227 1.227 22 H -0.152 1.152 23 C -0.233 4.233 24 C -0.190 4.190 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.175 0.825 31 H 0.210 0.790 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.010 0.990 35 H 0.151 0.849 36 H 0.098 0.902 37 H 0.018 0.982 38 H 0.072 0.928 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.259 -8.862 -13.621 16.574 hybrid contribution 2.316 -0.746 1.430 2.822 sum -0.943 -9.607 -12.191 15.550 Atomic orbital electron populations 1.21549 0.94780 1.00917 1.01832 1.21525 0.97488 0.92648 1.02375 1.20646 0.94796 0.94513 0.87482 0.95399 1.19662 1.02994 0.93517 0.95486 1.20034 1.03190 1.02204 0.90292 1.25659 1.08389 0.96403 1.04122 1.83917 1.65458 1.17031 0.98461 1.24993 1.07837 0.99324 0.98171 1.20223 1.00937 0.96297 0.89837 1.22813 0.94245 0.89508 1.02609 1.61819 1.58410 1.01974 1.00824 1.21679 0.94675 0.97603 0.88852 1.19226 0.96213 0.92254 0.93712 1.20046 0.97636 0.90839 1.42864 0.94321 1.25411 0.98434 0.95559 0.96168 1.70185 1.23116 1.18202 1.43662 0.86476 0.79598 0.81044 0.80356 1.20677 1.22724 1.15225 1.23129 1.05276 0.99878 0.95018 1.22643 0.91866 1.02588 1.01898 0.93803 0.92210 0.92754 0.89800 0.91668 0.82483 0.78965 0.90725 0.91257 0.99019 0.84914 0.90247 0.98172 0.92768 0.89125 0.90731 0.91093 0.88619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 9.51 71.98 0.68 -2.79 16 2 C -0.10 -2.64 5.10 30.59 0.16 -2.48 16 3 C 0.14 4.45 2.30 44.67 0.10 4.55 16 4 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 5 C -0.10 -3.23 4.53 -19.97 -0.09 -3.32 16 6 C -0.13 -3.08 9.25 21.29 0.20 -2.89 16 7 C -0.21 -4.60 11.21 66.65 0.75 -3.85 16 8 S 0.09 2.26 23.32 -56.49 -1.32 0.94 16 9 C -0.19 -6.18 6.42 25.12 0.16 -6.02 16 10 C -0.03 -1.27 6.50 30.19 0.20 -1.07 16 11 C 0.04 1.62 5.36 86.41 0.46 2.09 16 12 N -0.51 -19.57 3.29 -871.48 -2.87 -22.44 16 13 C 0.10 4.01 4.64 86.30 0.40 4.42 16 14 C -0.01 -0.56 1.02 -52.92 -0.05 -0.61 16 15 C -0.48 -25.02 5.95 25.60 0.15 -24.87 16 16 H 0.04 2.29 8.02 -2.91 -0.02 2.27 16 17 C 0.05 2.45 5.05 84.65 0.43 2.88 16 18 N -0.91 -53.09 13.96 21.45 0.30 -52.80 16 19 Si 0.90 42.17 25.97 68.60 1.78 43.95 16 20 H -0.28 -13.09 7.02 99.48 0.70 -12.39 16 21 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 22 H -0.23 -9.88 5.55 99.48 0.55 -9.32 16 23 C -0.19 -7.55 7.79 30.62 0.24 -7.31 16 24 C -0.15 -5.82 9.96 30.62 0.30 -5.52 16 25 H 0.04 1.17 7.38 -2.39 -0.02 1.15 16 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.05 1.68 6.60 -2.39 -0.02 1.67 16 28 H 0.08 1.73 7.04 -2.39 -0.02 1.72 16 29 H 0.06 1.65 6.45 -2.38 -0.02 1.63 16 30 H 0.16 2.99 7.20 -2.91 -0.02 2.97 16 31 H 0.19 2.82 8.06 -2.91 -0.02 2.80 16 32 H 0.07 2.89 8.14 -2.38 -0.02 2.87 16 33 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 34 H -0.01 -0.41 8.06 -2.39 -0.02 -0.42 16 35 H 0.13 6.84 3.71 -2.39 -0.01 6.83 16 36 H 0.08 2.76 5.87 -2.38 -0.01 2.75 16 37 H 0.00 0.00 6.63 -2.39 -0.02 -0.01 16 38 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 39 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 40 H 0.07 3.04 7.47 -2.39 -0.02 3.03 16 41 H 0.07 2.81 8.14 -2.38 -0.02 2.79 16 42 H 0.10 3.22 7.43 -2.39 -0.02 3.20 16 Total: -1.00 -58.38 327.93 2.83 -55.55 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.84 Total: 21.60 kcal Atomic # 6 Polarization: -50.89 SS G_CDS: 4.09 Total: -46.81 kcal Atomic # 7 Polarization: -72.66 SS G_CDS: -2.57 Total: -75.23 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.78 Total: 43.95 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -1.32 Total: 0.94 kcal Total: -58.38 2.83 -55.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602762474.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.168 kcal (2) G-P(sol) polarization free energy of solvation -58.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds