Wall clock time and date at job start Tue Mar 31 2020 07:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00133 * 2 1 4 4 H 1.48503 * 109.46930 * 270.00109 * 3 2 1 5 5 H 1.48497 * 109.47266 * 29.99755 * 3 2 1 6 6 H 1.48497 * 109.47350 * 150.00060 * 3 2 1 7 7 C 1.37875 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00700 * 205.20094 * 7 2 1 9 9 C 1.50708 * 119.99958 * 25.19576 * 7 2 1 10 10 C 1.53000 * 115.55003 * 337.09877 * 9 7 2 11 11 N 1.46890 * 109.47440 * 69.29516 * 10 9 7 12 12 C 1.46899 * 111.00347 * 191.58001 * 11 10 9 13 13 C 1.52994 * 109.47708 * 179.36134 * 12 11 10 14 14 C 1.53785 * 113.61418 * 269.39097 * 13 12 11 15 15 C 1.53956 * 87.02020 * 220.04388 * 14 13 12 16 16 C 1.53780 * 113.61910 * 171.78104 * 13 12 11 17 17 C 1.46902 * 111.00047 * 67.62593 * 11 10 9 18 18 C 1.53003 * 109.46947 * 68.90458 * 17 11 10 19 19 F 1.39903 * 109.47011 * 65.39235 * 18 17 11 20 20 F 1.39902 * 109.47002 * 185.39388 * 18 17 11 21 21 F 1.39901 * 109.46863 * 305.39204 * 18 17 11 22 22 C 1.52997 * 117.49606 * 122.76024 * 9 7 2 23 23 C 1.52996 * 117.49970 * 191.42096 * 9 7 2 24 24 H 0.97000 * 119.99938 * 4.75510 * 1 2 3 25 25 H 1.09004 * 109.46709 * 309.29595 * 10 9 7 26 26 H 1.08994 * 109.47270 * 189.30098 * 10 9 7 27 27 H 1.08999 * 109.47388 * 299.36433 * 12 11 10 28 28 H 1.09001 * 109.46861 * 59.35712 * 12 11 10 29 29 H 1.09000 * 112.84707 * 40.58324 * 13 12 11 30 30 H 1.08998 * 113.61220 * 334.56678 * 14 13 12 31 31 H 1.08999 * 113.61465 * 105.46911 * 14 13 12 32 32 H 1.09000 * 113.53785 * 270.81276 * 15 14 13 33 33 H 1.09001 * 113.66830 * 139.93172 * 15 14 13 34 34 H 1.08992 * 113.61563 * 254.52939 * 16 13 12 35 35 H 1.09003 * 113.61264 * 25.35306 * 16 13 12 36 36 H 1.09004 * 109.47281 * 188.90235 * 17 11 10 37 37 H 1.08994 * 109.47316 * 308.90602 * 17 11 10 38 38 H 1.09001 * 117.49859 * 215.00268 * 22 9 7 39 39 H 1.08999 * 117.50400 * 0.02880 * 22 9 7 40 40 H 1.08999 * 117.50119 * 359.97438 * 23 9 7 41 41 H 1.09001 * 117.49812 * 144.97387 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0075 -1.2384 0.3988 9 6 1.3586 -2.4374 -0.5545 10 6 -0.1711 -2.4300 -0.5824 11 7 -0.6380 -1.4613 -1.5831 12 6 -2.0817 -1.2233 -1.4520 13 6 -2.5269 -0.1995 -2.4980 14 6 -2.4656 1.2548 -2.0018 15 6 -3.7943 1.4802 -2.7460 16 6 -4.0528 -0.0267 -2.5806 17 6 -0.2986 -1.9034 -2.9422 18 6 -1.1332 -3.1344 -3.3014 19 9 -2.4851 -2.7796 -3.3626 20 9 -0.7239 -3.6288 -4.5445 21 9 -0.9535 -4.1205 -2.3253 22 6 2.0824 -3.1622 -1.6910 23 6 2.0540 -3.7739 -0.2881 24 1 -0.4850 0.8372 -0.0696 25 1 -0.5510 -2.1493 0.4000 26 1 -0.5346 -3.4242 -0.8420 27 1 -2.6196 -2.1585 -1.6070 28 1 -2.2977 -0.8410 -0.4544 29 1 -2.0516 -0.3505 -3.4672 30 1 -2.5496 1.3506 -0.9193 31 1 -1.6313 1.8221 -2.4144 32 1 -3.6653 1.7898 -3.7831 33 1 -4.5003 2.1067 -2.2009 34 1 -4.4980 -0.4924 -3.4597 35 1 -4.5718 -0.2832 -1.6570 36 1 -0.5115 -1.1013 -3.6490 37 1 0.7605 -2.1565 -2.9882 38 1 1.4687 -3.6339 -2.4585 39 1 3.0259 -2.7402 -2.0370 40 1 2.9789 -3.7539 0.2883 41 1 1.4216 -4.6479 -0.1321 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602779717.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:59 Heat of formation + Delta-G solvation = -52.572059 kcal Electronic energy + Delta-G solvation = -26434.255806 eV Core-core repulsion = 22516.963409 eV Total energy + Delta-G solvation = -3917.292396 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -49.72850 -47.20652 -47.14862 -38.78173 -37.29663 -34.62563 -32.11769 -28.95042 -27.74784 -25.52753 -25.06733 -23.80656 -23.07914 -21.23146 -20.64215 -19.13326 -18.84922 -18.08804 -18.03888 -16.70694 -15.94234 -15.33088 -14.84520 -14.47954 -14.38857 -14.21191 -13.95070 -13.85599 -13.67262 -13.55579 -13.21941 -12.82570 -12.67228 -12.32070 -12.00246 -11.80472 -11.63220 -11.38464 -11.26926 -10.86221 -10.78774 -10.59425 -10.38068 -10.27595 -10.11884 -10.01164 -9.79295 -9.66301 -9.31723 -8.69174 -8.64358 -8.15120 -6.80769 -5.90502 -3.80023 3.36255 3.39324 3.44809 3.49753 4.38400 4.47778 4.56589 4.63165 4.81793 5.05517 5.12245 5.14595 5.29837 5.48359 5.61205 5.79844 5.87784 5.96949 6.05135 6.14441 6.16575 6.17543 6.27507 6.32713 6.49558 6.50723 6.58580 6.64719 6.70009 6.72808 6.80852 6.90738 7.04334 7.09704 7.30956 7.64771 7.99352 8.09431 8.22523 8.58364 9.06317 9.69361 11.04909 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.012621 B = 0.010030 C = 0.006286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.053022 B = 2790.987896 C = 4453.334968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.097 3.903 3 Si 0.863 3.137 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.515 4.515 8 H 0.053 0.947 9 C 0.064 3.936 10 C 0.093 3.907 11 N -0.426 5.426 12 C 0.060 3.940 13 C -0.097 4.097 14 C -0.118 4.118 15 C -0.148 4.148 16 C -0.134 4.134 17 C -0.009 4.009 18 C 0.401 3.599 19 F -0.187 7.187 20 F -0.204 7.204 21 F -0.179 7.179 22 C -0.231 4.231 23 C -0.210 4.210 24 H 0.257 0.743 25 H 0.087 0.913 26 H 0.032 0.968 27 H 0.028 0.972 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.130 0.870 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.045 -1.261 -5.688 9.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.112 4.112 3 Si 0.691 3.309 4 H -0.209 1.209 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.550 4.550 8 H 0.071 0.929 9 C 0.063 3.937 10 C -0.034 4.034 11 N -0.144 5.144 12 C -0.068 4.068 13 C -0.116 4.116 14 C -0.155 4.155 15 C -0.186 4.186 16 C -0.172 4.172 17 C -0.141 4.141 18 C 0.344 3.656 19 F -0.169 7.169 20 F -0.186 7.186 21 F -0.160 7.160 22 C -0.269 4.269 23 C -0.248 4.248 24 H 0.069 0.931 25 H 0.105 0.895 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.147 0.853 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.034 -0.681 -5.471 8.938 hybrid contribution 0.104 -0.118 -0.537 0.560 sum -6.930 -0.800 -6.009 9.207 Atomic orbital electron populations 1.70198 1.05679 1.25982 1.41150 1.24661 0.94208 0.98026 0.94335 0.87102 0.80709 0.85178 0.77959 1.20862 1.21838 1.20467 1.20214 1.00008 0.91725 1.43063 0.92882 1.19033 0.90339 0.89837 0.94447 1.21958 0.94581 0.90607 0.96208 1.62530 1.12814 1.42072 0.97031 1.22379 0.87937 0.96717 0.99762 1.22493 0.94535 0.95616 0.98958 1.22846 0.95909 0.96395 1.00387 1.22900 0.98842 0.96530 1.00309 1.22877 0.97005 0.96069 1.01282 1.24566 1.02158 0.90136 0.97267 1.23707 0.80048 0.88231 0.73649 1.93104 1.36388 1.91665 1.95753 1.93117 1.90274 1.89940 1.45248 1.92989 1.95055 1.66404 1.61596 1.23230 1.03610 1.08908 0.91173 1.22863 1.03115 0.99252 0.99617 0.93143 0.89482 0.95079 0.95427 0.89581 0.90146 0.89786 0.92157 0.91044 0.92235 0.92377 0.90510 0.88233 0.85266 0.91993 0.90601 0.90740 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.07 7.39 55.43 0.41 -18.66 16 2 C 0.10 2.43 5.19 -17.82 -0.09 2.34 16 3 Si 0.86 19.98 29.61 -169.99 -5.03 14.94 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -13.33 9.05 -34.44 -0.31 -13.64 16 8 H 0.05 1.43 7.93 -52.49 -0.42 1.02 16 9 C 0.06 1.50 2.02 -155.66 -0.31 1.18 16 10 C 0.09 2.02 3.73 -3.83 -0.01 2.01 16 11 N -0.43 -8.52 2.19 -234.64 -0.51 -9.03 16 12 C 0.06 1.07 3.61 -3.83 -0.01 1.06 16 13 C -0.10 -1.54 2.60 -89.81 -0.23 -1.77 16 14 C -0.12 -1.83 7.27 -25.82 -0.19 -2.01 16 15 C -0.15 -1.93 8.09 -25.82 -0.21 -2.14 16 16 C -0.13 -1.84 7.65 -25.92 -0.20 -2.03 16 17 C -0.01 -0.17 4.77 -3.82 -0.02 -0.19 16 18 C 0.40 7.02 2.72 37.16 0.10 7.13 16 19 F -0.19 -3.19 12.89 2.25 0.03 -3.16 16 20 F -0.20 -3.49 17.32 2.25 0.04 -3.45 16 21 F -0.18 -3.37 12.96 2.25 0.03 -3.34 16 22 C -0.23 -4.93 7.96 -26.69 -0.21 -5.14 16 23 C -0.21 -4.52 9.91 -26.70 -0.26 -4.79 16 24 H 0.26 5.96 7.57 -40.82 -0.31 5.65 16 25 H 0.09 2.08 7.15 -51.93 -0.37 1.71 16 26 H 0.03 0.67 4.46 -51.93 -0.23 0.44 16 27 H 0.03 0.50 5.61 -51.93 -0.29 0.21 16 28 H 0.09 1.66 7.19 -51.93 -0.37 1.29 16 29 H 0.08 1.30 5.58 -51.93 -0.29 1.01 16 30 H 0.08 1.37 7.51 -51.93 -0.39 0.98 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 36 H 0.10 1.69 6.19 -51.93 -0.32 1.37 16 37 H 0.13 2.52 4.32 -51.93 -0.22 2.30 16 38 H 0.06 1.25 5.77 -51.93 -0.30 0.95 16 39 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 40 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 41 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 312.59 15.07 4.71 4.71 Total: -1.00 -24.41 312.59 -7.99 -32.40 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -5.69 Total: 3.61 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -1.97 Total: -18.02 kcal Atomic # 7 Polarization: -27.59 SS G_CDS: -0.10 Total: -27.70 kcal Atomic # 9 Polarization: -10.04 SS G_CDS: 0.10 Total: -9.95 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.94 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -24.41 -7.99 -32.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602779717.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.174 kcal (2) G-P(sol) polarization free energy of solvation -24.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds