Wall clock time and date at job start Tue Mar 31 2020 07:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00133 * 2 1 4 4 H 1.48503 * 109.46930 * 270.00109 * 3 2 1 5 5 H 1.48497 * 109.47266 * 29.99755 * 3 2 1 6 6 H 1.48497 * 109.47350 * 150.00060 * 3 2 1 7 7 C 1.37875 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00700 * 205.20094 * 7 2 1 9 9 C 1.50708 * 119.99958 * 25.19576 * 7 2 1 10 10 C 1.53000 * 115.55003 * 337.09877 * 9 7 2 11 11 N 1.46890 * 109.47440 * 69.29516 * 10 9 7 12 12 C 1.46899 * 111.00347 * 191.58001 * 11 10 9 13 13 C 1.52994 * 109.47708 * 179.36134 * 12 11 10 14 14 C 1.53785 * 113.61418 * 269.39097 * 13 12 11 15 15 C 1.53956 * 87.02020 * 220.04388 * 14 13 12 16 16 C 1.53780 * 113.61910 * 171.78104 * 13 12 11 17 17 C 1.46902 * 111.00047 * 67.62593 * 11 10 9 18 18 C 1.53003 * 109.46947 * 68.90458 * 17 11 10 19 19 F 1.39903 * 109.47011 * 65.39235 * 18 17 11 20 20 F 1.39902 * 109.47002 * 185.39388 * 18 17 11 21 21 F 1.39901 * 109.46863 * 305.39204 * 18 17 11 22 22 C 1.52997 * 117.49606 * 122.76024 * 9 7 2 23 23 C 1.52996 * 117.49970 * 191.42096 * 9 7 2 24 24 H 0.97000 * 119.99938 * 4.75510 * 1 2 3 25 25 H 1.09004 * 109.46709 * 309.29595 * 10 9 7 26 26 H 1.08994 * 109.47270 * 189.30098 * 10 9 7 27 27 H 1.08999 * 109.47388 * 299.36433 * 12 11 10 28 28 H 1.09001 * 109.46861 * 59.35712 * 12 11 10 29 29 H 1.09000 * 112.84707 * 40.58324 * 13 12 11 30 30 H 1.08998 * 113.61220 * 334.56678 * 14 13 12 31 31 H 1.08999 * 113.61465 * 105.46911 * 14 13 12 32 32 H 1.09000 * 113.53785 * 270.81276 * 15 14 13 33 33 H 1.09001 * 113.66830 * 139.93172 * 15 14 13 34 34 H 1.08992 * 113.61563 * 254.52939 * 16 13 12 35 35 H 1.09003 * 113.61264 * 25.35306 * 16 13 12 36 36 H 1.09004 * 109.47281 * 188.90235 * 17 11 10 37 37 H 1.08994 * 109.47316 * 308.90602 * 17 11 10 38 38 H 1.09001 * 117.49859 * 215.00268 * 22 9 7 39 39 H 1.08999 * 117.50400 * 0.02880 * 22 9 7 40 40 H 1.08999 * 117.50119 * 359.97438 * 23 9 7 41 41 H 1.09001 * 117.49812 * 144.97387 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0075 -1.2384 0.3988 9 6 1.3586 -2.4374 -0.5545 10 6 -0.1711 -2.4300 -0.5824 11 7 -0.6380 -1.4613 -1.5831 12 6 -2.0817 -1.2233 -1.4520 13 6 -2.5269 -0.1995 -2.4980 14 6 -2.4656 1.2548 -2.0018 15 6 -3.7943 1.4802 -2.7460 16 6 -4.0528 -0.0267 -2.5806 17 6 -0.2986 -1.9034 -2.9422 18 6 -1.1332 -3.1344 -3.3014 19 9 -2.4851 -2.7796 -3.3626 20 9 -0.7239 -3.6288 -4.5445 21 9 -0.9535 -4.1205 -2.3253 22 6 2.0824 -3.1622 -1.6910 23 6 2.0540 -3.7739 -0.2881 24 1 -0.4850 0.8372 -0.0696 25 1 -0.5510 -2.1493 0.4000 26 1 -0.5346 -3.4242 -0.8420 27 1 -2.6196 -2.1585 -1.6070 28 1 -2.2977 -0.8410 -0.4544 29 1 -2.0516 -0.3505 -3.4672 30 1 -2.5496 1.3506 -0.9193 31 1 -1.6313 1.8221 -2.4144 32 1 -3.6653 1.7898 -3.7831 33 1 -4.5003 2.1067 -2.2009 34 1 -4.4980 -0.4924 -3.4597 35 1 -4.5718 -0.2832 -1.6570 36 1 -0.5115 -1.1013 -3.6490 37 1 0.7605 -2.1565 -2.9882 38 1 1.4687 -3.6339 -2.4585 39 1 3.0259 -2.7402 -2.0370 40 1 2.9789 -3.7539 0.2883 41 1 1.4216 -4.6479 -0.1321 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602779717.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:52 Heat of formation + Delta-G solvation = -61.475295 kcal Electronic energy + Delta-G solvation = -26434.641879 eV Core-core repulsion = 22516.963409 eV Total energy + Delta-G solvation = -3917.678470 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -51.15255 -48.64882 -48.53844 -40.13624 -38.83807 -36.20231 -34.02423 -30.41939 -29.23881 -27.33964 -26.29307 -25.34723 -24.45979 -22.93780 -22.03624 -20.86995 -20.14939 -19.51725 -19.45086 -18.30266 -17.62917 -16.62971 -16.59468 -15.97230 -15.90041 -15.66877 -15.49417 -15.27173 -15.16426 -14.97562 -14.68736 -14.45178 -14.19120 -13.72392 -13.32076 -13.24511 -13.16234 -13.02423 -12.68358 -12.63267 -12.49957 -12.16463 -12.02396 -11.97935 -11.75792 -11.39034 -11.17557 -10.99836 -10.88938 -10.47985 -10.35201 -9.97415 -8.42087 -7.80148 -5.74816 1.49299 1.55557 1.60206 1.95090 2.62157 2.86685 3.01470 3.20386 3.28049 3.56520 3.80464 3.91130 3.97695 4.04649 4.19081 4.34575 4.41473 4.59915 4.63480 4.70364 4.82734 4.88295 4.95256 4.96757 4.98784 5.02259 5.04452 5.15792 5.18035 5.28071 5.32547 5.37209 5.56647 5.58940 5.78067 5.87259 6.05514 6.48594 6.61146 6.73303 7.11480 7.73631 9.11878 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.012621 B = 0.010030 C = 0.006286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.053022 B = 2790.987896 C = 4453.334968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.073 3.927 3 Si 0.906 3.094 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.546 4.546 8 H 0.030 0.970 9 C 0.042 3.958 10 C 0.106 3.894 11 N -0.442 5.442 12 C 0.067 3.933 13 C -0.101 4.101 14 C -0.123 4.123 15 C -0.134 4.134 16 C -0.127 4.127 17 C -0.007 4.007 18 C 0.409 3.591 19 F -0.182 7.182 20 F -0.198 7.198 21 F -0.186 7.186 22 C -0.214 4.214 23 C -0.207 4.207 24 H 0.260 0.740 25 H 0.060 0.940 26 H 0.040 0.960 27 H 0.028 0.972 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.287 -1.065 -7.002 10.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.581 4.581 8 H 0.048 0.952 9 C 0.041 3.959 10 C -0.021 4.021 11 N -0.160 5.160 12 C -0.060 4.060 13 C -0.120 4.120 14 C -0.161 4.161 15 C -0.171 4.171 16 C -0.165 4.165 17 C -0.138 4.138 18 C 0.352 3.648 19 F -0.163 7.163 20 F -0.180 7.180 21 F -0.168 7.168 22 C -0.252 4.252 23 C -0.245 4.245 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.290 -0.486 -6.790 10.727 hybrid contribution 0.501 -0.183 -0.110 0.545 sum -7.789 -0.669 -6.900 10.427 Atomic orbital electron populations 1.70263 1.05525 1.26352 1.39914 1.24971 0.94924 0.99178 0.94603 0.86462 0.79422 0.83280 0.77480 1.20983 1.21571 1.21675 1.20274 0.99436 0.93598 1.44830 0.95211 1.19087 0.91266 0.89646 0.95895 1.21718 0.93568 0.91340 0.95472 1.62358 1.14101 1.42056 0.97489 1.22315 0.86776 0.97239 0.99666 1.22524 0.96384 0.94984 0.98078 1.22817 0.97190 0.96193 0.99887 1.22838 0.97174 0.96320 1.00753 1.22840 0.95113 0.96600 1.01914 1.24468 1.01650 0.91071 0.96639 1.23385 0.80134 0.87635 0.73637 1.93114 1.35903 1.91587 1.95718 1.93130 1.90255 1.89823 1.44783 1.92964 1.95125 1.66635 1.62032 1.23136 1.03087 1.07842 0.91151 1.22894 1.02906 0.98972 0.99732 0.92883 0.92190 0.94284 0.95426 0.91357 0.90131 0.91059 0.93346 0.89811 0.90871 0.91283 0.90295 0.86662 0.86320 0.90591 0.91090 0.91178 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.76 7.39 21.45 0.16 -37.60 16 2 C 0.07 3.69 5.19 84.65 0.44 4.13 16 3 Si 0.91 41.24 29.61 68.60 2.03 43.27 16 4 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 6 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 7 C -0.55 -28.70 9.05 25.60 0.23 -28.47 16 8 H 0.03 1.65 7.93 -2.91 -0.02 1.63 16 9 C 0.04 1.95 2.02 -52.93 -0.11 1.84 16 10 C 0.11 4.59 3.73 86.31 0.32 4.91 16 11 N -0.44 -17.34 2.19 -896.26 -1.96 -19.30 16 12 C 0.07 2.36 3.61 86.30 0.31 2.67 16 13 C -0.10 -3.02 2.60 -10.27 -0.03 -3.04 16 14 C -0.12 -3.64 7.27 31.18 0.23 -3.42 16 15 C -0.13 -3.10 8.09 31.18 0.25 -2.84 16 16 C -0.13 -3.13 7.65 31.12 0.24 -2.89 16 17 C -0.01 -0.23 4.77 86.30 0.41 0.18 16 18 C 0.41 13.50 2.72 71.98 0.20 13.70 16 19 F -0.18 -5.74 12.89 44.97 0.58 -5.16 16 20 F -0.20 -6.30 17.32 44.97 0.78 -5.52 16 21 F -0.19 -6.66 12.96 44.97 0.58 -6.08 16 22 C -0.21 -8.95 7.96 30.62 0.24 -8.71 16 23 C -0.21 -8.80 9.91 30.62 0.30 -8.49 16 24 H 0.26 11.98 7.57 -92.71 -0.70 11.28 16 25 H 0.06 2.90 7.15 -2.38 -0.02 2.88 16 26 H 0.04 1.64 4.46 -2.39 -0.01 1.63 16 27 H 0.03 0.97 5.61 -2.39 -0.01 0.96 16 28 H 0.07 2.63 7.19 -2.39 -0.02 2.61 16 29 H 0.08 2.41 5.58 -2.39 -0.01 2.40 16 30 H 0.07 2.28 7.51 -2.39 -0.02 2.26 16 31 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.08 1.92 8.10 -2.39 -0.02 1.90 16 36 H 0.12 3.68 6.19 -2.38 -0.01 3.66 16 37 H 0.12 4.46 4.32 -2.39 -0.01 4.45 16 38 H 0.08 2.94 5.77 -2.39 -0.01 2.92 16 39 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 40 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 41 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -50.64 312.59 6.33 -44.31 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 1.11 Total: 16.51 kcal Atomic # 6 Polarization: -33.48 SS G_CDS: 3.04 Total: -30.44 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -1.80 Total: -56.89 kcal Atomic # 9 Polarization: -18.70 SS G_CDS: 1.94 Total: -16.76 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -50.64 6.33 -44.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602779717.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.163 kcal (2) G-P(sol) polarization free energy of solvation -50.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds