Wall clock time and date at job start Tue Mar 31 2020 09:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00018 * 2 1 4 4 H 1.48497 * 109.46617 * 275.44696 * 3 2 1 5 5 H 1.48495 * 109.47061 * 35.44304 * 3 2 1 6 6 H 1.48497 * 109.47269 * 155.44546 * 3 2 1 7 7 C 1.37877 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00017 * 343.92040 * 7 2 1 9 9 C 1.50697 * 120.00379 * 163.92211 * 7 2 1 10 10 C 1.53004 * 115.54661 * 323.97676 * 9 7 2 11 11 N 1.46897 * 109.47344 * 291.02949 * 10 9 7 12 12 C 1.46848 * 110.99681 * 53.26863 * 11 10 9 13 13 C 1.53034 * 109.52664 * 185.83942 * 12 11 10 14 14 C 1.53126 * 109.27919 * 300.82686 * 13 12 11 15 15 C 1.52997 * 109.52539 * 177.55640 * 14 13 12 16 16 C 1.52994 * 109.46993 * 65.31196 * 15 14 13 17 17 F 1.39908 * 109.47184 * 60.00384 * 16 15 14 18 18 F 1.39902 * 109.47292 * 179.97438 * 16 15 14 19 19 F 1.39896 * 109.47452 * 300.00113 * 16 15 14 20 20 C 1.53123 * 109.16060 * 57.64777 * 14 13 12 21 21 C 1.46840 * 111.00143 * 177.47813 * 11 10 9 22 22 C 1.52997 * 117.50078 * 109.64379 * 9 7 2 23 23 C 1.52999 * 117.50349 * 178.30497 * 9 7 2 24 24 H 0.96994 * 120.00198 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47151 * 51.03540 * 10 9 7 26 26 H 1.09001 * 109.46569 * 171.03332 * 10 9 7 27 27 H 1.08998 * 109.46697 * 305.85605 * 12 11 10 28 28 H 1.09002 * 109.46428 * 65.82285 * 12 11 10 29 29 H 1.08990 * 109.51008 * 180.88122 * 13 12 11 30 30 H 1.09010 * 109.50134 * 60.75840 * 13 12 11 31 31 H 1.09001 * 109.51930 * 297.74856 * 14 13 12 32 32 H 1.08999 * 109.46852 * 185.31450 * 15 14 13 33 33 H 1.09005 * 109.46860 * 305.31252 * 15 14 13 34 34 H 1.08995 * 109.49904 * 182.41027 * 20 14 13 35 35 H 1.09002 * 109.50340 * 62.29088 * 20 14 13 36 36 H 1.08994 * 109.46562 * 294.17840 * 21 11 10 37 37 H 1.09004 * 109.46214 * 54.15084 * 21 11 10 38 38 H 1.09000 * 117.50103 * 215.00640 * 22 9 7 39 39 H 1.09000 * 117.49798 * 0.02673 * 22 9 7 40 40 H 1.09004 * 117.49468 * 359.97438 * 23 9 7 41 41 H 1.08993 * 117.50082 * 144.97032 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3815 2.1128 -1.3938 5 1 1.5089 2.6167 0.8119 6 1 3.5995 1.4098 0.5818 7 6 2.0046 -1.1940 0.0005 8 1 1.4963 -2.1110 0.2600 9 6 3.4674 -1.2197 -0.3609 10 6 3.8942 -0.2383 -1.4543 11 7 3.3246 -0.6604 -2.7408 12 6 1.8714 -0.8450 -2.6376 13 6 1.3347 -1.4222 -3.9493 14 6 1.6661 -0.4636 -5.0966 15 6 1.1857 -1.0639 -6.4194 16 6 -0.3412 -1.1606 -6.4108 17 9 -0.8886 0.1172 -6.2525 18 9 -0.7805 -1.7089 -7.6206 19 9 -0.7508 -1.9779 -5.3519 20 6 3.1814 -0.2506 -5.1516 21 6 3.6645 0.2927 -3.8049 22 6 4.4674 -1.5060 0.7611 23 6 4.1858 -2.5693 -0.3033 24 1 -0.4850 0.8400 -0.0004 25 1 3.5336 0.7602 -1.2073 26 1 4.9818 -0.2244 -1.5256 27 1 1.6496 -1.5320 -1.8209 28 1 1.3961 0.1163 -2.4424 29 1 0.2540 -1.5445 -3.8780 30 1 1.7994 -2.3900 -4.1382 31 1 1.1698 0.4920 -4.9275 32 1 1.5049 -0.4270 -7.2444 33 1 1.6122 -2.0594 -6.5427 34 1 3.4199 0.4643 -5.9391 35 1 3.6751 -1.1999 -5.3593 36 1 3.1808 1.2487 -3.6044 37 1 4.7451 0.4320 -3.8361 38 1 5.4294 -0.9951 0.7204 39 1 4.0672 -1.6761 1.7606 40 1 3.6004 -3.4386 -0.0036 41 1 4.9622 -2.7582 -1.0446 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602824845.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:51 Heat of formation + Delta-G solvation = -116.964073 kcal Electronic energy + Delta-G solvation = -25350.233576 eV Core-core repulsion = 21430.148933 eV Total energy + Delta-G solvation = -3920.084644 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.02468 -47.53931 -47.46095 -38.99277 -36.79499 -33.97500 -32.45005 -30.21679 -29.75326 -26.48548 -25.41265 -23.31726 -22.46459 -21.32341 -21.17438 -19.36494 -19.02234 -18.42210 -18.22541 -17.16506 -16.49871 -15.64787 -15.05283 -14.54112 -14.44537 -14.30343 -14.05519 -13.92696 -13.81857 -13.69572 -13.58755 -13.14160 -13.05944 -12.88904 -12.77775 -12.27251 -11.89016 -11.77299 -11.64311 -11.32846 -10.94252 -10.68801 -10.53727 -10.41519 -10.30761 -9.98783 -9.78804 -9.72703 -9.38523 -9.04171 -8.75326 -8.26453 -7.33262 -6.25361 -4.06052 2.88641 3.14774 3.31897 3.35541 3.91732 4.10080 4.14694 4.29125 4.54330 4.86803 4.95167 4.98954 5.10913 5.41245 5.43261 5.49093 5.60861 5.74747 5.85748 5.91917 5.96184 6.06502 6.15453 6.19297 6.31346 6.35886 6.43989 6.53285 6.56906 6.63306 6.67240 6.80797 7.01215 7.10004 7.22478 7.55439 7.69695 7.97229 8.11565 8.45694 8.81205 9.39537 10.84709 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.020144 B = 0.005612 C = 0.005257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.681051 B = 4987.809034 C = 5324.634550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.083 3.917 3 Si 0.883 3.117 4 H -0.286 1.286 5 H -0.300 1.300 6 H -0.264 1.264 7 C -0.484 4.484 8 H 0.082 0.918 9 C 0.009 3.991 10 C 0.087 3.913 11 N -0.523 5.523 12 C 0.037 3.963 13 C -0.131 4.131 14 C -0.096 4.096 15 C -0.158 4.158 16 C 0.450 3.550 17 F -0.185 7.185 18 F -0.193 7.193 19 F -0.172 7.172 20 C -0.099 4.099 21 C 0.048 3.952 22 C -0.210 4.210 23 C -0.174 4.174 24 H 0.266 0.734 25 H 0.020 0.980 26 H 0.054 0.946 27 H 0.151 0.849 28 H 0.027 0.973 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.024 0.976 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.898 -0.639 -12.873 13.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.122 4.122 3 Si 0.715 3.285 4 H -0.214 1.214 5 H -0.228 1.228 6 H -0.189 1.189 7 C -0.520 4.520 8 H 0.099 0.901 9 C 0.008 3.992 10 C -0.040 4.040 11 N -0.248 5.248 12 C -0.089 4.089 13 C -0.168 4.168 14 C -0.115 4.115 15 C -0.196 4.196 16 C 0.396 3.604 17 F -0.167 7.167 18 F -0.174 7.174 19 F -0.153 7.153 20 C -0.137 4.137 21 C -0.080 4.080 22 C -0.249 4.249 23 C -0.211 4.211 24 H 0.076 0.924 25 H 0.038 0.962 26 H 0.073 0.927 27 H 0.168 0.832 28 H 0.045 0.955 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.042 0.958 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.867 -0.982 -12.994 13.593 hybrid contribution -0.112 1.920 0.129 1.928 sum 3.756 0.938 -12.866 13.436 Atomic orbital electron populations 1.69939 1.06182 1.27291 1.47696 1.24912 0.94452 0.98694 0.94110 0.86998 0.80525 0.83972 0.76994 1.21428 1.22829 1.18925 1.20186 0.90165 0.95359 1.46312 0.90055 1.19299 0.93532 0.93531 0.92850 1.21866 0.97014 0.96024 0.89067 1.61987 1.14085 1.44676 1.04027 1.23158 0.84731 1.02506 0.98510 1.22221 1.02263 0.98032 0.94320 1.21339 0.97220 1.00261 0.92630 1.22963 0.87794 1.06283 1.02595 1.20732 0.92964 0.73565 0.73137 1.93177 1.88210 1.39972 1.95331 1.93160 1.91783 1.86119 1.46371 1.93143 1.92342 1.73260 1.56566 1.21493 0.93980 1.01494 0.96716 1.22055 0.99646 0.94045 0.92283 1.23128 1.00459 1.05477 0.95811 1.22643 1.03362 0.93659 1.01434 0.92384 0.96244 0.92710 0.83242 0.95458 0.89970 0.91649 0.90628 0.87943 0.87334 0.92211 0.90917 0.95764 0.91636 0.91693 0.89844 0.90276 0.90769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.76 13.96 55.43 0.77 -23.98 16 2 C 0.08 2.22 3.43 -17.82 -0.06 2.15 16 3 Si 0.88 21.63 23.29 -169.99 -3.96 17.68 16 4 H -0.29 -6.93 6.89 56.52 0.39 -6.54 16 5 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.26 -6.32 6.93 56.52 0.39 -5.93 16 7 C -0.48 -12.61 6.44 -34.44 -0.22 -12.83 16 8 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 9 C 0.01 0.21 1.10 -155.66 -0.17 0.03 16 10 C 0.09 1.87 4.39 -3.82 -0.02 1.85 16 11 N -0.52 -10.37 4.75 -234.68 -1.12 -11.48 16 12 C 0.04 0.79 3.80 -3.84 -0.01 0.78 16 13 C -0.13 -2.29 4.75 -26.65 -0.13 -2.42 16 14 C -0.10 -1.37 2.19 -90.49 -0.20 -1.57 16 15 C -0.16 -1.76 4.84 -26.74 -0.13 -1.89 16 16 C 0.45 5.92 3.15 37.15 0.12 6.03 16 17 F -0.19 -2.69 16.71 2.25 0.04 -2.65 16 18 F -0.19 -2.44 17.32 2.25 0.04 -2.40 16 19 F -0.17 -2.61 13.87 2.25 0.03 -2.58 16 20 C -0.10 -1.33 5.38 -26.65 -0.14 -1.47 16 21 C 0.05 0.81 5.46 -3.84 -0.02 0.79 16 22 C -0.21 -4.37 9.91 -26.70 -0.26 -4.64 16 23 C -0.17 -3.52 9.96 -26.70 -0.27 -3.78 16 24 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.02 0.46 2.25 -51.93 -0.12 0.35 16 26 H 0.05 1.07 8.06 -51.93 -0.42 0.65 16 27 H 0.15 3.69 4.32 -51.93 -0.22 3.47 16 28 H 0.03 0.66 6.26 -51.93 -0.33 0.33 16 29 H 0.08 1.51 5.37 -51.93 -0.28 1.23 16 30 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 31 H 0.08 1.19 7.67 -51.93 -0.40 0.79 16 32 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 40 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 41 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 315.47 15.07 4.75 4.75 Total: -1.00 -27.21 315.47 -6.95 -34.16 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -5.99 Total: 3.47 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -1.52 Total: -16.96 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: -0.34 Total: -35.46 kcal Atomic # 9 Polarization: -7.74 SS G_CDS: 0.11 Total: -7.63 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -3.96 Total: 17.68 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.21 -6.95 -34.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602824845.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.807 kcal (2) G-P(sol) polarization free energy of solvation -27.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds