Wall clock time and date at job start Tue Mar 31 2020 09:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00018 * 2 1 4 4 H 1.48497 * 109.46617 * 275.44696 * 3 2 1 5 5 H 1.48495 * 109.47061 * 35.44304 * 3 2 1 6 6 H 1.48497 * 109.47269 * 155.44546 * 3 2 1 7 7 C 1.37877 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00017 * 343.92040 * 7 2 1 9 9 C 1.50697 * 120.00379 * 163.92211 * 7 2 1 10 10 C 1.53004 * 115.54661 * 323.97676 * 9 7 2 11 11 N 1.46897 * 109.47344 * 291.02949 * 10 9 7 12 12 C 1.46848 * 110.99681 * 53.26863 * 11 10 9 13 13 C 1.53034 * 109.52664 * 185.83942 * 12 11 10 14 14 C 1.53126 * 109.27919 * 300.82686 * 13 12 11 15 15 C 1.52997 * 109.52539 * 177.55640 * 14 13 12 16 16 C 1.52994 * 109.46993 * 65.31196 * 15 14 13 17 17 F 1.39908 * 109.47184 * 60.00384 * 16 15 14 18 18 F 1.39902 * 109.47292 * 179.97438 * 16 15 14 19 19 F 1.39896 * 109.47452 * 300.00113 * 16 15 14 20 20 C 1.53123 * 109.16060 * 57.64777 * 14 13 12 21 21 C 1.46840 * 111.00143 * 177.47813 * 11 10 9 22 22 C 1.52997 * 117.50078 * 109.64379 * 9 7 2 23 23 C 1.52999 * 117.50349 * 178.30497 * 9 7 2 24 24 H 0.96994 * 120.00198 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47151 * 51.03540 * 10 9 7 26 26 H 1.09001 * 109.46569 * 171.03332 * 10 9 7 27 27 H 1.08998 * 109.46697 * 305.85605 * 12 11 10 28 28 H 1.09002 * 109.46428 * 65.82285 * 12 11 10 29 29 H 1.08990 * 109.51008 * 180.88122 * 13 12 11 30 30 H 1.09010 * 109.50134 * 60.75840 * 13 12 11 31 31 H 1.09001 * 109.51930 * 297.74856 * 14 13 12 32 32 H 1.08999 * 109.46852 * 185.31450 * 15 14 13 33 33 H 1.09005 * 109.46860 * 305.31252 * 15 14 13 34 34 H 1.08995 * 109.49904 * 182.41027 * 20 14 13 35 35 H 1.09002 * 109.50340 * 62.29088 * 20 14 13 36 36 H 1.08994 * 109.46562 * 294.17840 * 21 11 10 37 37 H 1.09004 * 109.46214 * 54.15084 * 21 11 10 38 38 H 1.09000 * 117.50103 * 215.00640 * 22 9 7 39 39 H 1.09000 * 117.49798 * 0.02673 * 22 9 7 40 40 H 1.09004 * 117.49468 * 359.97438 * 23 9 7 41 41 H 1.08993 * 117.50082 * 144.97032 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3815 2.1128 -1.3938 5 1 1.5089 2.6167 0.8119 6 1 3.5995 1.4098 0.5818 7 6 2.0046 -1.1940 0.0005 8 1 1.4963 -2.1110 0.2600 9 6 3.4674 -1.2197 -0.3609 10 6 3.8942 -0.2383 -1.4543 11 7 3.3246 -0.6604 -2.7408 12 6 1.8714 -0.8450 -2.6376 13 6 1.3347 -1.4222 -3.9493 14 6 1.6661 -0.4636 -5.0966 15 6 1.1857 -1.0639 -6.4194 16 6 -0.3412 -1.1606 -6.4108 17 9 -0.8886 0.1172 -6.2525 18 9 -0.7805 -1.7089 -7.6206 19 9 -0.7508 -1.9779 -5.3519 20 6 3.1814 -0.2506 -5.1516 21 6 3.6645 0.2927 -3.8049 22 6 4.4674 -1.5060 0.7611 23 6 4.1858 -2.5693 -0.3033 24 1 -0.4850 0.8400 -0.0004 25 1 3.5336 0.7602 -1.2073 26 1 4.9818 -0.2244 -1.5256 27 1 1.6496 -1.5320 -1.8209 28 1 1.3961 0.1163 -2.4424 29 1 0.2540 -1.5445 -3.8780 30 1 1.7994 -2.3900 -4.1382 31 1 1.1698 0.4920 -4.9275 32 1 1.5049 -0.4270 -7.2444 33 1 1.6122 -2.0594 -6.5427 34 1 3.4199 0.4643 -5.9391 35 1 3.6751 -1.1999 -5.3593 36 1 3.1808 1.2487 -3.6044 37 1 4.7451 0.4320 -3.8361 38 1 5.4294 -0.9951 0.7204 39 1 4.0672 -1.6761 1.7606 40 1 3.6004 -3.4386 -0.0036 41 1 4.9622 -2.7582 -1.0446 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602824845.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:42 Heat of formation + Delta-G solvation = -133.527511 kcal Electronic energy + Delta-G solvation = -25350.951821 eV Core-core repulsion = 21430.148933 eV Total energy + Delta-G solvation = -3920.802888 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 7.97 seconds Orbital eigenvalues (eV) -51.09317 -48.61093 -48.54972 -40.49057 -38.31948 -35.33166 -34.46538 -31.58740 -31.02201 -28.25974 -27.03556 -24.57740 -23.83421 -22.94092 -22.47133 -20.90021 -20.68902 -19.50908 -19.29547 -18.39356 -18.19360 -17.44448 -16.54436 -15.88659 -15.73336 -15.52420 -15.44988 -15.24554 -15.07211 -14.93792 -14.82031 -14.70212 -14.57945 -14.27498 -14.16548 -13.82191 -13.26450 -13.05292 -13.01591 -12.69154 -12.62547 -12.41835 -12.07831 -11.95871 -11.82131 -11.64245 -11.40105 -11.19040 -11.11612 -10.76576 -10.48704 -10.23545 -8.97421 -8.34546 -6.14401 1.17309 1.29453 1.38226 1.88748 2.26181 2.83869 2.92917 3.05827 3.12787 3.16710 3.66813 3.84140 3.88507 3.95440 4.09983 4.26440 4.43249 4.44641 4.50569 4.55293 4.63698 4.66142 4.70422 4.79198 4.86587 4.88803 5.00409 5.04914 5.07776 5.17543 5.19390 5.33065 5.36239 5.55232 5.59310 5.70082 5.83494 6.30005 6.38549 6.53128 6.71646 7.31368 8.79291 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.020144 B = 0.005612 C = 0.005257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.681051 B = 4987.809034 C = 5324.634550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.044 3.956 3 Si 0.932 3.068 4 H -0.286 1.286 5 H -0.310 1.310 6 H -0.249 1.249 7 C -0.472 4.472 8 H 0.040 0.960 9 C -0.022 4.022 10 C 0.086 3.914 11 N -0.519 5.519 12 C 0.050 3.950 13 C -0.126 4.126 14 C -0.092 4.092 15 C -0.145 4.145 16 C 0.444 3.556 17 F -0.197 7.197 18 F -0.188 7.188 19 F -0.189 7.189 20 C -0.090 4.090 21 C 0.041 3.959 22 C -0.200 4.200 23 C -0.155 4.155 24 H 0.263 0.737 25 H 0.002 0.998 26 H 0.083 0.917 27 H 0.110 0.890 28 H -0.011 1.011 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.138 0.862 33 H 0.131 0.869 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.002 0.998 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.019 -0.630 -15.258 16.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.156 4.156 3 Si 0.763 3.237 4 H -0.214 1.214 5 H -0.239 1.239 6 H -0.173 1.173 7 C -0.509 4.509 8 H 0.058 0.942 9 C -0.023 4.023 10 C -0.041 4.041 11 N -0.243 5.243 12 C -0.078 4.078 13 C -0.164 4.164 14 C -0.111 4.111 15 C -0.182 4.182 16 C 0.390 3.610 17 F -0.179 7.179 18 F -0.170 7.170 19 F -0.171 7.171 20 C -0.128 4.128 21 C -0.087 4.087 22 C -0.238 4.238 23 C -0.192 4.192 24 H 0.072 0.928 25 H 0.019 0.981 26 H 0.101 0.899 27 H 0.128 0.872 28 H 0.008 0.992 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.156 0.844 33 H 0.149 0.851 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.021 0.979 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.018 -0.984 -15.382 16.936 hybrid contribution -1.115 1.812 0.890 2.306 sum 5.903 0.828 -14.492 15.670 Atomic orbital electron populations 1.70052 1.07689 1.27557 1.50604 1.25381 0.94728 1.01145 0.94341 0.86208 0.79961 0.80788 0.76748 1.21400 1.23877 1.17302 1.20234 0.92287 0.93534 1.44877 0.94153 1.19299 0.91800 0.96290 0.94911 1.21874 0.98502 0.94368 0.89353 1.62041 1.12353 1.45691 1.04210 1.22721 0.86078 0.99511 0.99460 1.22114 1.01087 0.99234 0.93959 1.21222 0.98425 0.98502 0.92962 1.22960 0.85615 1.08128 1.01530 1.21167 0.94242 0.72837 0.72738 1.93155 1.88586 1.40751 1.95392 1.93166 1.91902 1.85999 1.45912 1.93114 1.92667 1.73742 1.57568 1.21502 0.92512 1.03202 0.95567 1.22281 1.01087 0.92511 0.92826 1.23143 1.00564 1.05192 0.94914 1.22652 1.02826 0.92275 1.01434 0.92792 0.98109 0.89913 0.87249 0.99243 0.91702 0.90546 0.92546 0.84438 0.85057 0.88629 0.89193 0.97923 0.89158 0.88994 0.90728 0.91064 0.88220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.19 13.96 21.45 0.30 -54.89 16 2 C 0.04 2.45 3.43 84.65 0.29 2.74 16 3 Si 0.93 45.66 23.29 68.60 1.60 47.25 16 4 H -0.29 -13.83 6.89 99.48 0.69 -13.15 16 5 H -0.31 -15.45 7.11 99.48 0.71 -14.74 16 6 H -0.25 -11.41 6.93 99.48 0.69 -10.72 16 7 C -0.47 -25.57 6.44 25.60 0.16 -25.41 16 8 H 0.04 2.45 8.06 -2.91 -0.02 2.43 16 9 C -0.02 -0.98 1.10 -52.93 -0.06 -1.04 16 10 C 0.09 3.52 4.39 86.31 0.38 3.90 16 11 N -0.52 -19.68 4.75 -896.39 -4.26 -23.94 16 12 C 0.05 2.16 3.80 86.32 0.33 2.49 16 13 C -0.13 -4.39 4.75 30.65 0.15 -4.25 16 14 C -0.09 -2.44 2.19 -10.71 -0.02 -2.46 16 15 C -0.14 -2.70 4.84 30.59 0.15 -2.56 16 16 C 0.44 11.00 3.15 71.98 0.23 11.22 16 17 F -0.20 -5.60 16.71 44.97 0.75 -4.85 16 18 F -0.19 -4.38 17.32 44.97 0.78 -3.61 16 19 F -0.19 -5.76 13.87 44.97 0.62 -5.14 16 20 C -0.09 -2.03 5.38 30.65 0.16 -1.87 16 21 C 0.04 1.25 5.46 86.33 0.47 1.72 16 22 C -0.20 -7.85 9.91 30.62 0.30 -7.55 16 23 C -0.15 -5.95 9.96 30.62 0.30 -5.64 16 24 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 25 H 0.00 0.07 2.25 -2.39 -0.01 0.06 16 26 H 0.08 2.91 8.06 -2.39 -0.02 2.89 16 27 H 0.11 5.67 4.32 -2.39 -0.01 5.66 16 28 H -0.01 -0.55 6.26 -2.39 -0.01 -0.56 16 29 H 0.06 2.47 5.37 -2.39 -0.01 2.46 16 30 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 31 H 0.06 1.72 7.67 -2.39 -0.02 1.70 16 32 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.13 1.94 8.14 -2.38 -0.02 1.92 16 34 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 37 H 0.09 2.32 8.12 -2.38 -0.02 2.31 16 38 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 39 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 40 H 0.07 2.83 8.14 -2.38 -0.02 2.81 16 41 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -63.09 315.47 3.63 -59.46 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.99 Total: 14.39 kcal Atomic # 6 Polarization: -31.52 SS G_CDS: 2.85 Total: -28.68 kcal Atomic # 7 Polarization: -74.87 SS G_CDS: -3.96 Total: -78.83 kcal Atomic # 9 Polarization: -15.75 SS G_CDS: 2.15 Total: -13.59 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.60 Total: 47.25 kcal Total: -63.09 3.63 -59.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602824845.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.070 kcal (2) G-P(sol) polarization free energy of solvation -63.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.97 seconds