Wall clock time and date at job start Tue Mar 31 2020 08:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00479 * 2 1 4 4 H 1.48499 * 109.47087 * 240.00344 * 3 2 1 5 5 H 1.48500 * 109.46910 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46754 * 120.00499 * 3 2 1 7 7 C 1.37883 * 119.99209 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99252 * 169.36105 * 7 2 1 9 9 C 1.50697 * 120.00436 * 349.35829 * 7 2 1 10 10 C 1.53002 * 115.54987 * 324.95746 * 9 7 2 11 11 N 1.46906 * 109.46697 * 306.33208 * 10 9 7 12 12 C 1.46853 * 110.99747 * 284.79075 * 11 10 9 13 13 C 1.53034 * 109.51641 * 174.16210 * 12 11 10 14 14 C 1.53121 * 109.27977 * 59.18323 * 13 12 11 15 15 C 1.53116 * 109.15937 * 302.34217 * 14 13 12 16 16 H 1.09007 * 109.50097 * 297.71457 * 15 14 13 17 17 C 1.52992 * 109.50191 * 177.63743 * 15 14 13 18 18 C 1.52999 * 109.47589 * 65.07355 * 17 15 14 19 19 F 1.39899 * 109.46808 * 60.00351 * 18 17 15 20 20 F 1.39901 * 109.47317 * 180.02562 * 18 17 15 21 21 F 1.39894 * 109.47516 * 300.00281 * 18 17 15 22 22 C 1.46844 * 110.99474 * 160.58313 * 11 10 9 23 23 C 1.53004 * 117.49432 * 110.62057 * 9 7 2 24 24 C 1.52996 * 117.50077 * 179.28087 * 9 7 2 25 25 H 0.97002 * 119.99661 * 5.00926 * 1 2 3 26 26 H 1.09001 * 109.47008 * 186.33242 * 10 9 7 27 27 H 1.08996 * 109.47049 * 66.33347 * 10 9 7 28 28 H 1.08997 * 109.45991 * 54.14893 * 12 11 10 29 29 H 1.08996 * 109.45141 * 294.17486 * 12 11 10 30 30 H 1.08998 * 109.50821 * 299.23864 * 13 12 11 31 31 H 1.09006 * 109.50190 * 179.12124 * 13 12 11 32 32 H 1.09001 * 109.52110 * 182.43482 * 14 13 12 33 33 H 1.08997 * 109.57462 * 62.27954 * 14 13 12 34 34 H 1.08999 * 109.47332 * 185.07644 * 17 15 14 35 35 H 1.09005 * 109.47192 * 305.07455 * 17 15 14 36 36 H 1.08999 * 109.46296 * 65.82451 * 22 11 10 37 37 H 1.08990 * 109.46532 * 305.85494 * 22 11 10 38 38 H 1.09000 * 117.49885 * 215.00240 * 23 9 7 39 39 H 1.08998 * 117.50273 * 0.02877 * 23 9 7 40 40 H 1.09005 * 117.49929 * 359.97438 * 24 9 7 41 41 H 1.09000 * 117.50070 * 144.97510 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6961 1.2124 7 6 2.0044 -1.1942 -0.0005 8 1 3.0705 -1.2022 -0.1732 9 6 1.2703 -2.4881 0.2399 10 6 0.1053 -2.4119 1.2288 11 7 0.5730 -1.8262 2.4922 12 6 1.3647 -2.7957 3.2603 13 6 1.9549 -2.1101 4.4947 14 6 0.8177 -1.5545 5.3566 15 6 -0.0202 -0.5847 4.5188 16 1 0.6001 0.2553 4.2059 17 6 -1.1935 -0.0698 5.3548 18 6 -0.6611 0.7631 6.5225 19 9 0.0695 1.8481 6.0264 20 9 -1.7341 1.2334 7.2873 21 9 0.1680 -0.0310 7.3220 22 6 -0.5530 -1.3144 3.2836 23 6 1.1334 -3.4524 -0.9402 24 6 2.0884 -3.7806 0.2102 25 1 -0.4850 0.8369 -0.0734 26 1 -0.2804 -3.4145 1.4138 27 1 -0.6860 -1.7897 0.8108 28 1 2.1724 -3.1798 2.6373 29 1 0.7244 -3.6200 3.5739 30 1 2.6061 -1.2941 4.1815 31 1 2.5296 -2.8337 5.0730 32 1 1.2350 -1.0278 6.2148 33 1 0.1882 -2.3741 5.7032 34 1 -1.8395 0.5489 4.7319 35 1 -1.7629 -0.9152 5.7413 36 1 -1.1842 -2.1459 3.5972 37 1 -1.1382 -0.6229 2.6776 38 1 0.2134 -4.0325 -1.0119 39 1 1.5747 -3.1511 -1.8902 40 1 3.1577 -3.6951 0.0164 41 1 1.7970 -4.5766 0.8956 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602844551.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:54 Heat of formation + Delta-G solvation = -132.380797 kcal Electronic energy + Delta-G solvation = -25108.896210 eV Core-core repulsion = 21188.143047 eV Total energy + Delta-G solvation = -3920.753163 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.10432 -47.63385 -47.51806 -38.73130 -36.45382 -33.58797 -32.03631 -31.53524 -28.30004 -26.09074 -25.13272 -23.62909 -22.39194 -21.35170 -21.01063 -19.36506 -18.85280 -18.50443 -18.25461 -17.17986 -16.09602 -15.11921 -14.67810 -14.59890 -14.50696 -14.19657 -14.14019 -13.93442 -13.78020 -13.71764 -13.60260 -13.43445 -13.17554 -12.60280 -12.34734 -12.08850 -11.78157 -11.64579 -11.33933 -11.04429 -10.84341 -10.71773 -10.48477 -10.42534 -10.34779 -10.08838 -9.89832 -9.78556 -9.19106 -8.94581 -8.56949 -7.93203 -7.14605 -5.87337 -3.87411 2.83189 3.38831 3.43092 3.48833 3.86726 4.06156 4.11027 4.50953 4.70822 4.93443 5.07359 5.21242 5.24617 5.45678 5.52789 5.66175 5.68372 5.78995 5.86301 6.06252 6.12925 6.16411 6.21907 6.31956 6.40247 6.47828 6.53386 6.63400 6.65577 6.73541 6.78889 6.89313 6.99434 7.22611 7.38108 7.60101 8.05519 8.21661 8.26469 8.60753 9.05235 9.71821 11.15602 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.017440 B = 0.005710 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.152374 B = 4902.293132 C = 5744.872713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.091 3.909 3 Si 0.887 3.113 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.470 4.470 8 H 0.052 0.948 9 C 0.070 3.930 10 C 0.105 3.895 11 N -0.496 5.496 12 C 0.057 3.943 13 C -0.114 4.114 14 C -0.133 4.133 15 C -0.088 4.088 16 H 0.092 0.908 17 C -0.160 4.160 18 C 0.452 3.548 19 F -0.182 7.182 20 F -0.191 7.191 21 F -0.180 7.180 22 C 0.075 3.925 23 C -0.208 4.208 24 C -0.219 4.219 25 H 0.256 0.744 26 H -0.014 1.014 27 H 0.115 0.885 28 H 0.080 0.920 29 H 0.011 0.989 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.015 0.985 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.376 -1.390 11.893 12.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.111 4.111 3 Si 0.716 3.284 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.507 4.507 8 H 0.070 0.930 9 C 0.069 3.931 10 C -0.022 4.022 11 N -0.219 5.219 12 C -0.072 4.072 13 C -0.151 4.151 14 C -0.171 4.171 15 C -0.107 4.107 16 H 0.110 0.890 17 C -0.199 4.199 18 C 0.398 3.602 19 F -0.163 7.163 20 F -0.173 7.173 21 F -0.161 7.161 22 C -0.054 4.054 23 C -0.247 4.247 24 C -0.256 4.256 25 H 0.067 0.933 26 H 0.004 0.996 27 H 0.132 0.868 28 H 0.098 0.902 29 H 0.029 0.971 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.033 0.967 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.225 -0.832 11.870 12.328 hybrid contribution 0.054 0.217 0.339 0.407 sum -3.171 -0.614 12.209 12.629 Atomic orbital electron populations 1.69771 1.05966 1.26125 1.49857 1.24687 0.94513 0.98262 0.93684 0.86762 0.79785 0.83485 0.78401 1.20881 1.21562 1.20159 1.20226 0.93330 0.89087 1.48063 0.92983 1.18934 0.93619 0.88321 0.92227 1.21719 0.98779 0.93850 0.87810 1.61488 1.20728 1.36314 1.03336 1.22119 0.97883 0.92633 0.94544 1.21548 0.97446 1.00399 0.95749 1.22086 0.97781 0.98634 0.98558 1.21224 0.94503 0.99896 0.95048 0.88976 1.22941 1.01467 1.00886 0.94602 1.20738 0.75625 0.79231 0.84595 1.93196 1.78529 1.57252 1.87341 1.93165 1.56145 1.89668 1.78312 1.93078 1.73080 1.73501 1.76483 1.21892 0.92922 0.97541 0.93046 1.22971 0.99125 1.07893 0.94688 1.22942 0.96712 1.02878 1.03071 0.93337 0.99564 0.86758 0.90156 0.97128 0.90980 0.92500 0.90442 0.92608 0.87186 0.87710 0.96729 0.90080 0.92105 0.90531 0.90954 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.07 10.76 55.43 0.60 -22.47 16 2 C 0.09 2.39 5.14 -17.82 -0.09 2.30 16 3 Si 0.89 21.06 29.55 -169.99 -5.02 16.03 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.47 -12.46 8.72 -34.44 -0.30 -12.76 16 8 H 0.05 1.41 7.84 -52.49 -0.41 1.00 16 9 C 0.07 1.67 1.67 -155.66 -0.26 1.41 16 10 C 0.11 2.36 4.07 -3.82 -0.02 2.35 16 11 N -0.50 -10.10 4.13 -234.67 -0.97 -11.07 16 12 C 0.06 1.03 5.27 -3.83 -0.02 1.01 16 13 C -0.11 -1.79 6.09 -26.65 -0.16 -1.95 16 14 C -0.13 -1.88 4.65 -26.61 -0.12 -2.00 16 15 C -0.09 -1.31 2.29 -90.54 -0.21 -1.52 16 16 H 0.09 1.58 7.67 -51.92 -0.40 1.18 16 17 C -0.16 -1.88 4.85 -26.74 -0.13 -2.01 16 18 C 0.45 5.64 3.15 37.16 0.12 5.76 16 19 F -0.18 -2.59 16.71 2.25 0.04 -2.55 16 20 F -0.19 -2.36 17.32 2.25 0.04 -2.32 16 21 F -0.18 -2.30 13.86 2.25 0.03 -2.27 16 22 C 0.07 1.30 4.71 -3.84 -0.02 1.28 16 23 C -0.21 -4.68 9.96 -26.69 -0.27 -4.95 16 24 C -0.22 -4.70 8.51 -26.69 -0.23 -4.92 16 25 H 0.26 6.55 8.32 -40.82 -0.34 6.21 16 26 H -0.01 -0.30 7.95 -51.93 -0.41 -0.71 16 27 H 0.11 2.81 5.70 -51.93 -0.30 2.51 16 28 H 0.08 1.57 6.13 -51.93 -0.32 1.25 16 29 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.05 5.36 -51.93 -0.28 0.77 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.08 1.52 7.93 -51.93 -0.41 1.11 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 40 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 41 H 0.06 1.24 7.99 -51.93 -0.42 0.82 16 LS Contribution 329.04 15.07 4.96 4.96 Total: -1.00 -26.43 329.04 -8.34 -34.77 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -6.30 Total: 0.93 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -1.70 Total: -16.01 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: -0.37 Total: -33.55 kcal Atomic # 9 Polarization: -7.25 SS G_CDS: 0.11 Total: -7.14 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -26.43 -8.34 -34.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602844551.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.606 kcal (2) G-P(sol) polarization free energy of solvation -26.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds