Wall clock time and date at job start Tue Mar 31 2020 08:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00479 * 2 1 4 4 H 1.48499 * 109.47087 * 240.00344 * 3 2 1 5 5 H 1.48500 * 109.46910 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46754 * 120.00499 * 3 2 1 7 7 C 1.37883 * 119.99209 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99252 * 169.36105 * 7 2 1 9 9 C 1.50697 * 120.00436 * 349.35829 * 7 2 1 10 10 C 1.53002 * 115.54987 * 324.95746 * 9 7 2 11 11 N 1.46906 * 109.46697 * 306.33208 * 10 9 7 12 12 C 1.46853 * 110.99747 * 284.79075 * 11 10 9 13 13 C 1.53034 * 109.51641 * 174.16210 * 12 11 10 14 14 C 1.53121 * 109.27977 * 59.18323 * 13 12 11 15 15 C 1.53116 * 109.15937 * 302.34217 * 14 13 12 16 16 H 1.09007 * 109.50097 * 297.71457 * 15 14 13 17 17 C 1.52992 * 109.50191 * 177.63743 * 15 14 13 18 18 C 1.52999 * 109.47589 * 65.07355 * 17 15 14 19 19 F 1.39899 * 109.46808 * 60.00351 * 18 17 15 20 20 F 1.39901 * 109.47317 * 180.02562 * 18 17 15 21 21 F 1.39894 * 109.47516 * 300.00281 * 18 17 15 22 22 C 1.46844 * 110.99474 * 160.58313 * 11 10 9 23 23 C 1.53004 * 117.49432 * 110.62057 * 9 7 2 24 24 C 1.52996 * 117.50077 * 179.28087 * 9 7 2 25 25 H 0.97002 * 119.99661 * 5.00926 * 1 2 3 26 26 H 1.09001 * 109.47008 * 186.33242 * 10 9 7 27 27 H 1.08996 * 109.47049 * 66.33347 * 10 9 7 28 28 H 1.08997 * 109.45991 * 54.14893 * 12 11 10 29 29 H 1.08996 * 109.45141 * 294.17486 * 12 11 10 30 30 H 1.08998 * 109.50821 * 299.23864 * 13 12 11 31 31 H 1.09006 * 109.50190 * 179.12124 * 13 12 11 32 32 H 1.09001 * 109.52110 * 182.43482 * 14 13 12 33 33 H 1.08997 * 109.57462 * 62.27954 * 14 13 12 34 34 H 1.08999 * 109.47332 * 185.07644 * 17 15 14 35 35 H 1.09005 * 109.47192 * 305.07455 * 17 15 14 36 36 H 1.08999 * 109.46296 * 65.82451 * 22 11 10 37 37 H 1.08990 * 109.46532 * 305.85494 * 22 11 10 38 38 H 1.09000 * 117.49885 * 215.00240 * 23 9 7 39 39 H 1.08998 * 117.50273 * 0.02877 * 23 9 7 40 40 H 1.09005 * 117.49929 * 359.97438 * 24 9 7 41 41 H 1.09000 * 117.50070 * 144.97510 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6961 1.2124 7 6 2.0044 -1.1942 -0.0005 8 1 3.0705 -1.2022 -0.1732 9 6 1.2703 -2.4881 0.2399 10 6 0.1053 -2.4119 1.2288 11 7 0.5730 -1.8262 2.4922 12 6 1.3647 -2.7957 3.2603 13 6 1.9549 -2.1101 4.4947 14 6 0.8177 -1.5545 5.3566 15 6 -0.0202 -0.5847 4.5188 16 1 0.6001 0.2553 4.2059 17 6 -1.1935 -0.0698 5.3548 18 6 -0.6611 0.7631 6.5225 19 9 0.0695 1.8481 6.0264 20 9 -1.7341 1.2334 7.2873 21 9 0.1680 -0.0310 7.3220 22 6 -0.5530 -1.3144 3.2836 23 6 1.1334 -3.4524 -0.9402 24 6 2.0884 -3.7806 0.2102 25 1 -0.4850 0.8369 -0.0734 26 1 -0.2804 -3.4145 1.4138 27 1 -0.6860 -1.7897 0.8108 28 1 2.1724 -3.1798 2.6373 29 1 0.7244 -3.6200 3.5739 30 1 2.6061 -1.2941 4.1815 31 1 2.5296 -2.8337 5.0730 32 1 1.2350 -1.0278 6.2148 33 1 0.1882 -2.3741 5.7032 34 1 -1.8395 0.5489 4.7319 35 1 -1.7629 -0.9152 5.7413 36 1 -1.1842 -2.1459 3.5972 37 1 -1.1382 -0.6229 2.6776 38 1 0.2134 -4.0325 -1.0119 39 1 1.5747 -3.1511 -1.8902 40 1 3.1577 -3.6951 0.0164 41 1 1.7970 -4.5766 0.8956 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602844551.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:49 Heat of formation + Delta-G solvation = -144.724096 kcal Electronic energy + Delta-G solvation = -25109.431456 eV Core-core repulsion = 21188.143047 eV Total energy + Delta-G solvation = -3921.288409 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 4.57 seconds Orbital eigenvalues (eV) -51.10887 -48.61784 -48.55458 -40.15063 -38.11018 -34.91848 -33.99370 -32.88412 -29.48882 -27.79158 -26.98319 -24.75753 -23.79920 -22.88855 -22.46194 -20.72110 -20.60920 -19.51830 -19.30147 -18.22181 -17.95734 -16.60700 -16.43237 -15.89657 -15.60753 -15.53043 -15.42214 -15.29446 -15.07124 -14.90089 -14.77470 -14.67172 -14.41574 -14.22112 -13.63233 -13.36719 -13.23027 -13.00691 -12.89150 -12.78571 -12.65661 -12.27706 -12.18429 -11.98824 -11.87237 -11.54501 -11.40758 -11.17346 -10.92490 -10.83443 -10.37221 -9.83476 -8.66624 -7.87114 -5.92234 1.45476 1.49559 1.54606 1.84112 2.53528 2.85005 3.01897 3.14049 3.18419 3.45442 3.78463 3.85432 3.93015 4.06383 4.30248 4.37383 4.45161 4.50188 4.53739 4.58594 4.64431 4.79884 4.85493 4.87479 4.94776 4.96947 5.01798 5.10174 5.17935 5.20958 5.25481 5.41310 5.47970 5.55722 5.60726 5.71848 6.10488 6.51696 6.68577 6.79250 7.05227 7.67582 9.12819 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.017440 B = 0.005710 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.152374 B = 4902.293132 C = 5744.872713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.061 3.939 3 Si 0.930 3.070 4 H -0.283 1.283 5 H -0.286 1.286 6 H -0.281 1.281 7 C -0.488 4.488 8 H 0.034 0.966 9 C 0.042 3.958 10 C 0.118 3.882 11 N -0.519 5.519 12 C 0.058 3.942 13 C -0.110 4.110 14 C -0.127 4.127 15 C -0.082 4.082 16 H 0.063 0.937 17 C -0.152 4.152 18 C 0.455 3.545 19 F -0.195 7.195 20 F -0.188 7.188 21 F -0.180 7.180 22 C 0.078 3.922 23 C -0.209 4.209 24 C -0.196 4.196 25 H 0.256 0.744 26 H -0.007 1.007 27 H 0.089 0.911 28 H 0.061 0.939 29 H 0.024 0.976 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.118 0.882 35 H 0.132 0.868 36 H 0.032 0.968 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.940 -2.119 13.480 14.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.140 4.140 3 Si 0.758 3.242 4 H -0.209 1.209 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.525 4.525 8 H 0.053 0.947 9 C 0.041 3.959 10 C -0.009 4.009 11 N -0.243 5.243 12 C -0.070 4.070 13 C -0.148 4.148 14 C -0.164 4.164 15 C -0.101 4.101 16 H 0.082 0.918 17 C -0.190 4.190 18 C 0.401 3.599 19 F -0.177 7.177 20 F -0.170 7.170 21 F -0.162 7.162 22 C -0.051 4.051 23 C -0.248 4.248 24 C -0.233 4.233 25 H 0.065 0.935 26 H 0.011 0.989 27 H 0.107 0.893 28 H 0.080 0.920 29 H 0.042 0.958 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.136 0.864 35 H 0.150 0.850 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.788 -1.562 13.460 14.070 hybrid contribution 0.254 0.425 -0.177 0.526 sum -3.534 -1.137 13.283 13.792 Atomic orbital electron populations 1.69874 1.06350 1.26308 1.49992 1.25105 0.95152 1.00020 0.93739 0.86091 0.78878 0.81321 0.77894 1.20891 1.21140 1.20722 1.20362 0.92723 0.90801 1.48664 0.94728 1.19058 0.95000 0.88227 0.93629 1.21417 0.97303 0.93650 0.88568 1.61400 1.22159 1.37132 1.03560 1.22100 0.97231 0.92795 0.94826 1.21524 0.97882 1.00081 0.95310 1.22067 0.97266 0.98947 0.98126 1.21080 0.95416 0.98927 0.94720 0.91844 1.22892 1.00302 1.01841 0.94007 1.20774 0.75459 0.78897 0.84743 1.93176 1.78927 1.58026 1.87543 1.93172 1.55923 1.89644 1.78232 1.93073 1.73166 1.73398 1.76517 1.21852 0.92212 0.97707 0.93287 1.22961 1.00034 1.07610 0.94182 1.22885 0.96250 1.01847 1.02362 0.93478 0.98881 0.89296 0.92029 0.95823 0.93334 0.90101 0.89565 0.90670 0.86370 0.84987 0.94986 0.92121 0.90712 0.91545 0.91234 0.89967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.04 10.76 21.45 0.23 -46.81 16 2 C 0.06 3.25 5.14 84.66 0.43 3.69 16 3 Si 0.93 43.65 29.55 68.60 2.03 45.68 16 4 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 7 C -0.49 -26.27 8.72 25.60 0.22 -26.04 16 8 H 0.03 1.92 7.84 -2.91 -0.02 1.90 16 9 C 0.04 2.00 1.67 -52.93 -0.09 1.91 16 10 C 0.12 5.26 4.07 86.30 0.35 5.61 16 11 N -0.52 -20.89 4.13 -896.37 -3.71 -24.59 16 12 C 0.06 2.04 5.27 86.32 0.45 2.49 16 13 C -0.11 -3.27 6.09 30.65 0.19 -3.09 16 14 C -0.13 -3.24 4.65 30.67 0.14 -3.10 16 15 C -0.08 -2.33 2.29 -10.74 -0.02 -2.35 16 16 H 0.06 2.17 7.67 -2.38 -0.02 2.15 16 17 C -0.15 -3.19 4.85 30.59 0.15 -3.04 16 18 C 0.46 10.39 3.15 71.98 0.23 10.61 16 19 F -0.20 -5.35 16.71 44.97 0.75 -4.60 16 20 F -0.19 -4.20 17.32 44.97 0.78 -3.42 16 21 F -0.18 -4.14 13.86 44.97 0.62 -3.51 16 22 C 0.08 2.61 4.71 86.33 0.41 3.02 16 23 C -0.21 -9.30 9.96 30.62 0.30 -9.00 16 24 C -0.20 -8.24 8.51 30.62 0.26 -7.97 16 25 H 0.26 13.16 8.32 -92.71 -0.77 12.39 16 26 H -0.01 -0.28 7.95 -2.39 -0.02 -0.30 16 27 H 0.09 4.41 5.70 -2.39 -0.01 4.40 16 28 H 0.06 2.35 6.13 -2.39 -0.01 2.34 16 29 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.09 2.10 5.36 -2.39 -0.01 2.08 16 33 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.13 2.10 8.14 -2.38 -0.02 2.08 16 36 H 0.03 0.96 8.14 -2.39 -0.02 0.95 16 37 H 0.06 2.27 7.93 -2.39 -0.02 2.25 16 38 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 39 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 40 H 0.07 2.93 8.14 -2.38 -0.02 2.91 16 41 H 0.08 3.10 7.99 -2.39 -0.02 3.08 16 Total: -1.00 -56.22 329.04 4.75 -51.47 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 1.02 Total: 13.06 kcal Atomic # 6 Polarization: -30.30 SS G_CDS: 3.03 Total: -27.27 kcal Atomic # 7 Polarization: -67.93 SS G_CDS: -3.47 Total: -71.40 kcal Atomic # 9 Polarization: -13.69 SS G_CDS: 2.15 Total: -11.54 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -56.22 4.75 -51.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602844551.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.252 kcal (2) G-P(sol) polarization free energy of solvation -56.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.57 seconds