Wall clock time and date at job start Tue Mar 31 2020 08:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99837 * 2 1 4 4 H 1.48499 * 109.47049 * 355.00112 * 3 2 1 5 5 H 1.48500 * 109.47080 * 115.00616 * 3 2 1 6 6 H 1.48504 * 109.46996 * 235.00073 * 3 2 1 7 7 C 1.37880 * 120.00322 * 180.27899 * 2 1 3 8 8 H 1.07994 * 120.00016 * 188.21411 * 7 2 1 9 9 C 1.50697 * 119.99735 * 8.20738 * 7 2 1 10 10 C 1.53003 * 115.54778 * 65.11977 * 9 7 2 11 11 N 1.46903 * 109.47260 * 54.23780 * 10 9 7 12 12 C 1.46850 * 110.99729 * 51.66168 * 11 10 9 13 13 C 1.53036 * 109.52236 * 185.83850 * 12 11 10 14 14 C 1.53113 * 109.28191 * 300.82713 * 13 12 11 15 15 C 1.53120 * 109.16465 * 57.65205 * 14 13 12 16 16 H 1.08998 * 109.50409 * 62.28468 * 15 14 13 17 17 C 1.52998 * 109.54154 * 182.38716 * 15 14 13 18 18 C 1.52998 * 109.46760 * 294.82394 * 17 15 14 19 19 F 1.39904 * 109.47315 * 59.99727 * 18 17 15 20 20 F 1.39901 * 109.46905 * 179.97438 * 18 17 15 21 21 F 1.39892 * 109.47212 * 299.99631 * 18 17 15 22 22 C 1.46845 * 111.00334 * 175.87296 * 11 10 9 23 23 C 1.52995 * 117.50432 * 279.41304 * 9 7 2 24 24 C 1.52993 * 117.50153 * 210.78703 * 9 7 2 25 25 H 0.97005 * 119.99998 * 185.15411 * 1 2 3 26 26 H 1.09002 * 109.47130 * 174.23878 * 10 9 7 27 27 H 1.09005 * 109.47181 * 294.23708 * 10 9 7 28 28 H 1.08995 * 109.46700 * 305.85873 * 12 11 10 29 29 H 1.09001 * 109.46012 * 65.82873 * 12 11 10 30 30 H 1.08997 * 109.50383 * 180.88195 * 13 12 11 31 31 H 1.09008 * 109.53404 * 60.78386 * 13 12 11 32 32 H 1.09006 * 109.52418 * 297.74946 * 14 13 12 33 33 H 1.08999 * 109.57690 * 177.59041 * 14 13 12 34 34 H 1.09001 * 109.46601 * 54.81945 * 17 15 14 35 35 H 1.08995 * 109.47443 * 174.82017 * 17 15 14 36 36 H 1.08998 * 109.46574 * 294.17811 * 22 11 10 37 37 H 1.09003 * 109.45875 * 54.15551 * 22 11 10 38 38 H 1.09000 * 117.49683 * 0.02562 * 23 9 7 39 39 H 1.08995 * 117.50522 * 145.01887 * 23 9 7 40 40 H 1.09005 * 117.50461 * 214.98362 * 24 9 7 41 41 H 1.09002 * 117.49869 * 0.02562 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2887 2.7438 -0.1220 5 1 3.0091 1.7506 1.2688 6 1 3.1921 1.6449 -1.1469 7 6 2.0046 -1.1940 -0.0058 8 1 3.0762 -1.1994 0.1278 9 6 1.2627 -2.4915 -0.1984 10 6 0.5923 -2.6721 -1.5619 11 7 1.5867 -2.4799 -2.6259 12 6 2.7723 -3.3152 -2.3953 13 6 3.8425 -2.9831 -3.4375 14 6 3.2801 -3.2380 -4.8386 15 6 2.0188 -2.3924 -5.0355 16 1 2.2752 -1.3352 -4.9681 17 6 1.4159 -2.6852 -6.4109 18 6 2.3835 -2.2203 -7.5011 19 9 3.5976 -2.9029 -7.3692 20 9 1.8326 -2.4885 -8.7588 21 9 2.6053 -0.8451 -7.3724 22 6 1.0014 -2.7418 -3.9469 23 6 0.5581 -3.0902 1.0205 24 6 1.8335 -3.7390 0.4788 25 1 -0.4850 -0.8367 0.0755 26 1 0.1753 -3.6768 -1.6315 27 1 -0.2063 -1.9387 -1.6741 28 1 3.1648 -3.1211 -1.3971 29 1 2.4975 -4.3667 -2.4792 30 1 4.7163 -3.6142 -3.2758 31 1 4.1283 -1.9352 -3.3453 32 1 3.0309 -4.2939 -4.9446 33 1 4.0237 -2.9624 -5.5864 34 1 1.2432 -3.7567 -6.5112 35 1 0.4701 -2.1534 -6.5137 36 1 0.7350 -3.7959 -4.0236 37 1 0.1078 -2.1310 -4.0757 38 1 0.6308 -2.5454 1.9618 39 1 -0.3833 -3.6128 0.8514 40 1 1.7311 -4.6885 -0.0466 41 1 2.7454 -3.6212 1.0642 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602844553.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:44:02 Heat of formation + Delta-G solvation = -140.370158 kcal Electronic energy + Delta-G solvation = -24852.903413 eV Core-core repulsion = 20931.803806 eV Total energy + Delta-G solvation = -3921.099608 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.20023 -47.72617 -47.61770 -39.02494 -36.79703 -33.74258 -31.87963 -31.79470 -28.46194 -26.26506 -24.81721 -23.73095 -22.60079 -21.59108 -21.17160 -19.52902 -19.14400 -18.60207 -18.36871 -17.30715 -16.55057 -15.37078 -14.80874 -14.61366 -14.40095 -14.37807 -14.09159 -14.01609 -13.83833 -13.76522 -13.67668 -13.60765 -13.30250 -12.72855 -12.52241 -12.22651 -12.16621 -11.91189 -11.57256 -11.17401 -10.89119 -10.73354 -10.70905 -10.44683 -10.38987 -10.14009 -10.02815 -9.92039 -9.33031 -8.63367 -8.42579 -8.10536 -7.45115 -6.22395 -3.92362 2.72170 3.49790 3.54940 3.70966 3.74581 3.93328 3.99711 4.49994 4.62340 4.77962 4.92006 5.07214 5.13562 5.32664 5.37592 5.49079 5.50817 5.63372 5.69431 5.89812 5.91432 5.97140 6.07094 6.14075 6.19491 6.26396 6.34454 6.35186 6.44199 6.52732 6.62534 6.72451 6.82429 6.94948 7.22564 7.25782 7.87153 7.95267 8.36353 8.51622 8.97628 9.77440 11.15451 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.018787 B = 0.004872 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.059029 B = 5745.742619 C = 6393.132039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.035 3.965 3 Si 1.060 2.940 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.544 4.544 8 H 0.048 0.952 9 C 0.035 3.965 10 C 0.100 3.900 11 N -0.506 5.506 12 C 0.060 3.940 13 C -0.115 4.115 14 C -0.134 4.134 15 C -0.087 4.087 16 H 0.094 0.906 17 C -0.161 4.161 18 C 0.453 3.547 19 F -0.179 7.179 20 F -0.190 7.190 21 F -0.181 7.181 22 C 0.066 3.934 23 C -0.194 4.194 24 C -0.200 4.200 25 H 0.271 0.729 26 H -0.002 1.002 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.012 0.988 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.022 0.978 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.340 -7.101 -12.898 15.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.170 4.170 3 Si 0.889 3.111 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.213 1.213 7 C -0.582 4.582 8 H 0.066 0.934 9 C 0.035 3.965 10 C -0.027 4.027 11 N -0.229 5.229 12 C -0.068 4.068 13 C -0.153 4.153 14 C -0.171 4.171 15 C -0.106 4.106 16 H 0.112 0.888 17 C -0.200 4.200 18 C 0.399 3.601 19 F -0.161 7.161 20 F -0.172 7.172 21 F -0.163 7.163 22 C -0.063 4.063 23 C -0.232 4.232 24 C -0.238 4.238 25 H 0.082 0.918 26 H 0.017 0.983 27 H 0.094 0.906 28 H 0.114 0.886 29 H 0.030 0.970 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.040 0.960 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.306 -4.940 -12.978 14.275 hybrid contribution -0.003 -2.594 -0.118 2.596 sum 3.303 -7.534 -13.096 15.466 Atomic orbital electron populations 1.70739 1.06924 1.30990 1.45743 1.25544 0.96381 1.01848 0.93226 0.83695 0.75145 0.75953 0.76335 1.21070 1.21910 1.21319 1.21030 0.93848 0.89834 1.53475 0.93374 1.19118 0.97146 0.92560 0.87724 1.21654 0.93602 0.96159 0.91289 1.61644 1.06690 1.54667 0.99878 1.22115 0.91319 0.92652 1.00695 1.21575 0.97546 1.02496 0.93687 1.22100 0.97127 0.99070 0.98843 1.21201 0.96154 1.02562 0.90679 0.88753 1.22937 0.98498 1.05072 0.93456 1.20679 0.81285 0.75402 0.82743 1.93089 1.47916 1.79850 1.95200 1.93172 1.85407 1.93702 1.44912 1.93196 1.95226 1.32021 1.95817 1.21959 0.96288 0.98053 0.89977 1.22948 0.93691 1.05201 1.01397 1.22850 0.97377 0.96924 1.06599 0.91774 0.98347 0.90588 0.88614 0.97032 0.92216 0.90854 0.92537 0.90202 0.87624 0.87203 0.95965 0.91010 0.89992 0.91920 0.91829 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.20 13.22 55.43 0.73 -25.46 16 2 C 0.03 0.96 5.38 -17.82 -0.10 0.86 16 3 Si 1.06 25.01 29.91 -169.99 -5.08 19.92 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.54 -14.44 7.96 -34.44 -0.27 -14.71 16 8 H 0.05 1.31 7.83 -52.49 -0.41 0.90 16 9 C 0.04 0.83 0.13 -155.67 -0.02 0.81 16 10 C 0.10 2.18 4.82 -3.82 -0.02 2.17 16 11 N -0.51 -9.94 4.45 -234.66 -1.04 -10.98 16 12 C 0.06 1.08 4.72 -3.83 -0.02 1.07 16 13 C -0.12 -1.77 6.09 -26.65 -0.16 -1.93 16 14 C -0.13 -1.77 4.66 -26.61 -0.12 -1.90 16 15 C -0.09 -1.17 2.29 -90.54 -0.21 -1.38 16 16 H 0.09 1.43 7.66 -51.93 -0.40 1.04 16 17 C -0.16 -1.66 4.84 -26.73 -0.13 -1.79 16 18 C 0.45 5.11 3.15 37.16 0.12 5.23 16 19 F -0.18 -2.12 13.87 2.25 0.03 -2.09 16 20 F -0.19 -2.15 17.32 2.25 0.04 -2.11 16 21 F -0.18 -2.33 16.71 2.25 0.04 -2.29 16 22 C 0.07 1.04 4.74 -3.83 -0.02 1.02 16 23 C -0.19 -4.33 9.38 -26.74 -0.25 -4.58 16 24 C -0.20 -4.19 8.15 -26.74 -0.22 -4.41 16 25 H 0.27 7.75 6.15 -40.82 -0.25 7.50 16 26 H 0.00 -0.03 8.08 -51.93 -0.42 -0.45 16 27 H 0.08 1.82 6.94 -51.93 -0.36 1.46 16 28 H 0.10 1.96 5.27 -51.93 -0.27 1.68 16 29 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.24 8.14 -51.92 -0.42 0.81 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 1.01 5.36 -51.93 -0.28 0.73 16 34 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 1.13 8.12 -51.93 -0.42 0.71 16 38 H 0.08 1.93 8.14 -51.93 -0.42 1.51 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 LS Contribution 328.10 15.07 4.94 4.94 Total: -1.00 -28.25 328.10 -8.02 -36.27 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -6.26 Total: 1.35 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -1.42 Total: -19.55 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: -0.31 Total: -36.44 kcal Atomic # 9 Polarization: -6.60 SS G_CDS: 0.11 Total: -6.49 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.08 Total: 19.92 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.25 -8.02 -36.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602844553.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.101 kcal (2) G-P(sol) polarization free energy of solvation -28.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds