Wall clock time and date at job start Tue Mar 31 2020 08:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99837 * 2 1 4 4 H 1.48499 * 109.47049 * 355.00112 * 3 2 1 5 5 H 1.48500 * 109.47080 * 115.00616 * 3 2 1 6 6 H 1.48504 * 109.46996 * 235.00073 * 3 2 1 7 7 C 1.37880 * 120.00322 * 180.27899 * 2 1 3 8 8 H 1.07994 * 120.00016 * 188.21411 * 7 2 1 9 9 C 1.50697 * 119.99735 * 8.20738 * 7 2 1 10 10 C 1.53003 * 115.54778 * 65.11977 * 9 7 2 11 11 N 1.46903 * 109.47260 * 54.23780 * 10 9 7 12 12 C 1.46850 * 110.99729 * 51.66168 * 11 10 9 13 13 C 1.53036 * 109.52236 * 185.83850 * 12 11 10 14 14 C 1.53113 * 109.28191 * 300.82713 * 13 12 11 15 15 C 1.53120 * 109.16465 * 57.65205 * 14 13 12 16 16 H 1.08998 * 109.50409 * 62.28468 * 15 14 13 17 17 C 1.52998 * 109.54154 * 182.38716 * 15 14 13 18 18 C 1.52998 * 109.46760 * 294.82394 * 17 15 14 19 19 F 1.39904 * 109.47315 * 59.99727 * 18 17 15 20 20 F 1.39901 * 109.46905 * 179.97438 * 18 17 15 21 21 F 1.39892 * 109.47212 * 299.99631 * 18 17 15 22 22 C 1.46845 * 111.00334 * 175.87296 * 11 10 9 23 23 C 1.52995 * 117.50432 * 279.41304 * 9 7 2 24 24 C 1.52993 * 117.50153 * 210.78703 * 9 7 2 25 25 H 0.97005 * 119.99998 * 185.15411 * 1 2 3 26 26 H 1.09002 * 109.47130 * 174.23878 * 10 9 7 27 27 H 1.09005 * 109.47181 * 294.23708 * 10 9 7 28 28 H 1.08995 * 109.46700 * 305.85873 * 12 11 10 29 29 H 1.09001 * 109.46012 * 65.82873 * 12 11 10 30 30 H 1.08997 * 109.50383 * 180.88195 * 13 12 11 31 31 H 1.09008 * 109.53404 * 60.78386 * 13 12 11 32 32 H 1.09006 * 109.52418 * 297.74946 * 14 13 12 33 33 H 1.08999 * 109.57690 * 177.59041 * 14 13 12 34 34 H 1.09001 * 109.46601 * 54.81945 * 17 15 14 35 35 H 1.08995 * 109.47443 * 174.82017 * 17 15 14 36 36 H 1.08998 * 109.46574 * 294.17811 * 22 11 10 37 37 H 1.09003 * 109.45875 * 54.15551 * 22 11 10 38 38 H 1.09000 * 117.49683 * 0.02562 * 23 9 7 39 39 H 1.08995 * 117.50522 * 145.01887 * 23 9 7 40 40 H 1.09005 * 117.50461 * 214.98362 * 24 9 7 41 41 H 1.09002 * 117.49869 * 0.02562 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2887 2.7438 -0.1220 5 1 3.0091 1.7506 1.2688 6 1 3.1921 1.6449 -1.1469 7 6 2.0046 -1.1940 -0.0058 8 1 3.0762 -1.1994 0.1278 9 6 1.2627 -2.4915 -0.1984 10 6 0.5923 -2.6721 -1.5619 11 7 1.5867 -2.4799 -2.6259 12 6 2.7723 -3.3152 -2.3953 13 6 3.8425 -2.9831 -3.4375 14 6 3.2801 -3.2380 -4.8386 15 6 2.0188 -2.3924 -5.0355 16 1 2.2752 -1.3352 -4.9681 17 6 1.4159 -2.6852 -6.4109 18 6 2.3835 -2.2203 -7.5011 19 9 3.5976 -2.9029 -7.3692 20 9 1.8326 -2.4885 -8.7588 21 9 2.6053 -0.8451 -7.3724 22 6 1.0014 -2.7418 -3.9469 23 6 0.5581 -3.0902 1.0205 24 6 1.8335 -3.7390 0.4788 25 1 -0.4850 -0.8367 0.0755 26 1 0.1753 -3.6768 -1.6315 27 1 -0.2063 -1.9387 -1.6741 28 1 3.1648 -3.1211 -1.3971 29 1 2.4975 -4.3667 -2.4792 30 1 4.7163 -3.6142 -3.2758 31 1 4.1283 -1.9352 -3.3453 32 1 3.0309 -4.2939 -4.9446 33 1 4.0237 -2.9624 -5.5864 34 1 1.2432 -3.7567 -6.5112 35 1 0.4701 -2.1534 -6.5137 36 1 0.7350 -3.7959 -4.0236 37 1 0.1078 -2.1310 -4.0757 38 1 0.6308 -2.5454 1.9618 39 1 -0.3833 -3.6128 0.8514 40 1 1.7311 -4.6885 -0.0466 41 1 2.7454 -3.6212 1.0642 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602844553.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:44:02 Heat of formation + Delta-G solvation = -154.951020 kcal Electronic energy + Delta-G solvation = -24853.535687 eV Core-core repulsion = 20931.803806 eV Total energy + Delta-G solvation = -3921.731881 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.10376 -48.61653 -48.54783 -40.42484 -38.39059 -35.02414 -33.91676 -33.04792 -29.56957 -27.79238 -26.83010 -24.81559 -23.93959 -23.08496 -22.58021 -21.01827 -20.69882 -19.51533 -19.31108 -18.45884 -18.22334 -16.75357 -16.04987 -15.71590 -15.63213 -15.63096 -15.53420 -15.43320 -15.12688 -14.92640 -14.79053 -14.66924 -14.51222 -14.25033 -14.19455 -13.56731 -13.38641 -12.98925 -12.90315 -12.80180 -12.57718 -12.39238 -12.23084 -12.02534 -11.93144 -11.61048 -11.46891 -11.23291 -10.91804 -10.60500 -10.27429 -10.08313 -8.92088 -8.37562 -6.06302 1.57260 1.64780 1.82191 1.83866 2.66076 2.80102 2.97544 3.13813 3.15660 3.38035 3.48973 3.76614 3.87044 3.99082 4.13165 4.27212 4.33433 4.39914 4.41899 4.47183 4.55611 4.60382 4.61631 4.72447 4.80408 4.82071 4.90429 4.95520 5.05547 5.09949 5.16857 5.21122 5.38992 5.46211 5.47616 5.53859 6.21642 6.35099 6.49485 6.53604 6.86498 7.68086 9.01150 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.018787 B = 0.004872 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.059029 B = 5745.742619 C = 6393.132039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.009 4.009 3 Si 1.097 2.903 4 H -0.290 1.290 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.544 4.544 8 H 0.033 0.967 9 C 0.010 3.990 10 C 0.114 3.886 11 N -0.531 5.531 12 C 0.064 3.936 13 C -0.112 4.112 14 C -0.128 4.128 15 C -0.082 4.082 16 H 0.071 0.929 17 C -0.151 4.151 18 C 0.455 3.545 19 F -0.182 7.182 20 F -0.189 7.189 21 F -0.193 7.193 22 C 0.066 3.934 23 C -0.197 4.197 24 C -0.173 4.173 25 H 0.263 0.737 26 H 0.012 0.988 27 H 0.045 0.955 28 H 0.067 0.933 29 H 0.024 0.976 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.131 0.869 35 H 0.123 0.877 36 H 0.041 0.959 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.878 -8.599 -14.323 17.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.209 4.209 3 Si 0.922 3.078 4 H -0.215 1.215 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.581 4.581 8 H 0.052 0.948 9 C 0.009 3.991 10 C -0.014 4.014 11 N -0.255 5.255 12 C -0.063 4.063 13 C -0.150 4.150 14 C -0.165 4.165 15 C -0.101 4.101 16 H 0.089 0.911 17 C -0.190 4.190 18 C 0.401 3.599 19 F -0.163 7.163 20 F -0.170 7.170 21 F -0.175 7.175 22 C -0.062 4.062 23 C -0.236 4.236 24 C -0.210 4.210 25 H 0.073 0.927 26 H 0.030 0.970 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.042 0.958 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.149 0.851 35 H 0.142 0.858 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.860 -6.455 -14.405 16.250 hybrid contribution -0.136 -2.168 0.340 2.199 sum 3.725 -8.623 -14.065 16.913 Atomic orbital electron populations 1.70828 1.07636 1.30535 1.48227 1.26559 0.96513 1.04728 0.93089 0.83189 0.74407 0.73091 0.77131 1.21537 1.20449 1.20495 1.21218 0.93259 0.91444 1.52211 0.94848 1.19173 0.98368 0.92547 0.89019 1.21352 0.93185 0.95782 0.91081 1.61554 1.06958 1.56031 1.00954 1.22033 0.91249 0.92980 1.00062 1.21550 0.97542 1.01485 0.94447 1.22080 0.97018 1.00014 0.97375 1.21076 0.95942 1.01312 0.91783 0.91061 1.22890 0.98357 1.06884 0.90849 1.20778 0.81300 0.74805 0.83046 1.93079 1.48223 1.79794 1.95206 1.93176 1.85345 1.93626 1.44863 1.93178 1.95316 1.33123 1.95887 1.22014 0.96604 0.99019 0.88587 1.22889 0.95248 1.05448 1.00005 1.22815 0.96332 0.96789 1.05076 0.92684 0.96984 0.93660 0.91505 0.95808 0.90276 0.93124 0.90735 0.89335 0.85086 0.85829 0.94126 0.91589 0.91973 0.90336 0.89370 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.08 13.22 21.45 0.28 -54.80 16 2 C -0.01 -0.51 5.38 84.66 0.46 -0.06 16 3 Si 1.10 51.06 29.91 68.60 2.05 53.11 16 4 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.54 -29.26 7.96 25.60 0.20 -29.05 16 8 H 0.03 1.85 7.83 -2.91 -0.02 1.82 16 9 C 0.01 0.45 0.13 -52.93 -0.01 0.45 16 10 C 0.11 4.93 4.82 86.30 0.42 5.34 16 11 N -0.53 -20.51 4.45 -896.34 -3.99 -24.50 16 12 C 0.06 2.24 4.72 86.32 0.41 2.64 16 13 C -0.11 -3.27 6.09 30.64 0.19 -3.08 16 14 C -0.13 -3.03 4.66 30.67 0.14 -2.88 16 15 C -0.08 -2.04 2.29 -10.74 -0.02 -2.07 16 16 H 0.07 2.12 7.66 -2.39 -0.02 2.10 16 17 C -0.15 -2.66 4.84 30.59 0.15 -2.52 16 18 C 0.45 9.18 3.15 71.98 0.23 9.40 16 19 F -0.18 -3.82 13.87 44.97 0.62 -3.20 16 20 F -0.19 -3.79 17.32 44.97 0.78 -3.01 16 21 F -0.19 -4.72 16.71 44.97 0.75 -3.97 16 22 C 0.07 1.96 4.74 86.33 0.41 2.36 16 23 C -0.20 -8.77 9.38 30.59 0.29 -8.48 16 24 C -0.17 -7.02 8.15 30.59 0.25 -6.77 16 25 H 0.26 15.44 6.15 -92.70 -0.57 14.87 16 26 H 0.01 0.48 8.08 -2.39 -0.02 0.46 16 27 H 0.04 2.21 6.94 -2.38 -0.02 2.20 16 28 H 0.07 2.69 5.27 -2.39 -0.01 2.68 16 29 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.09 1.99 5.36 -2.39 -0.01 1.98 16 34 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 2.02 8.12 -2.39 -0.02 2.00 16 38 H 0.06 2.97 8.14 -2.39 -0.02 2.95 16 39 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 40 H 0.09 3.14 8.14 -2.38 -0.02 3.12 16 41 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -61.21 328.10 4.82 -56.40 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 1.22 Total: 14.67 kcal Atomic # 6 Polarization: -37.82 SS G_CDS: 3.10 Total: -34.71 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -3.71 Total: -79.29 kcal Atomic # 9 Polarization: -12.33 SS G_CDS: 2.15 Total: -10.17 kcal Atomic # 14 Polarization: 51.06 SS G_CDS: 2.05 Total: 53.11 kcal Total: -61.21 4.82 -56.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602844553.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.556 kcal (2) G-P(sol) polarization free energy of solvation -61.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds