Wall clock time and date at job start Tue Mar 31 2020 06:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.46833 * 2 1 4 4 C 1.36085 * 126.34469 * 90.00173 * 3 2 1 5 5 C 1.50706 * 124.95421 * 0.02695 * 4 3 2 6 6 N 1.46908 * 109.46935 * 269.71879 * 5 4 3 7 7 C 1.46894 * 110.99837 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47104 * 324.99694 * 7 6 5 9 9 C 1.52997 * 109.47515 * 84.99962 * 7 6 5 10 10 C 1.50708 * 109.46991 * 205.00145 * 7 6 5 11 11 H 1.08000 * 119.99723 * 359.97438 * 10 7 6 12 12 C 1.37873 * 119.99930 * 179.97438 * 10 7 6 13 13 N 1.31509 * 120.00195 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 119.99968 * 179.97438 * 12 10 7 15 15 H 1.48498 * 109.46680 * 60.00159 * 14 12 10 16 16 H 1.48492 * 109.47298 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.46944 * 300.00675 * 14 12 10 18 18 N 1.30081 * 110.09269 * 179.76174 * 4 3 2 19 19 C 1.35817 * 109.62996 * 0.23913 * 18 4 3 20 20 C 1.38070 * 126.34997 * 270.18217 * 3 2 1 21 21 C 1.38831 * 134.04299 * 359.96202 * 20 3 2 22 22 C 1.37854 * 119.87447 * 180.30801 * 21 20 3 23 23 C 1.38747 * 120.47639 * 0.02562 * 22 21 20 24 24 C 1.37834 * 120.49862 * 359.96915 * 23 22 21 25 25 F 1.35098 * 120.13910 * 180.02562 * 24 23 22 26 26 H 1.08993 * 109.47434 * 299.99294 * 1 2 3 27 27 H 1.09000 * 109.47490 * 59.99779 * 1 2 3 28 28 H 1.09010 * 109.46849 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46778 * 240.00546 * 2 1 3 30 30 H 1.09000 * 109.47490 * 120.00221 * 2 1 3 31 31 H 1.08993 * 109.47103 * 149.72020 * 5 4 3 32 32 H 1.09002 * 109.47193 * 29.71536 * 5 4 3 33 33 H 1.00898 * 110.99816 * 56.04381 * 6 5 4 34 34 H 1.09002 * 109.47153 * 59.99762 * 9 7 6 35 35 H 1.09001 * 109.46832 * 299.99953 * 9 7 6 36 36 H 1.09004 * 109.47261 * 179.97438 * 9 7 6 37 37 H 0.97006 * 120.00358 * 179.97438 * 13 12 10 38 38 H 1.07999 * 120.05796 * 0.33500 * 21 20 3 39 39 H 1.07999 * 119.76200 * 180.02562 * 22 21 20 40 40 H 1.07998 * 119.74532 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2871 2.1416 1.0961 5 6 2.1266 1.6858 2.5236 6 7 0.7706 2.0049 2.9900 7 6 0.5776 1.5746 4.3812 8 1 1.1310 0.6520 4.5562 9 6 1.0883 2.6630 5.3274 10 6 -0.8889 1.3364 4.6344 11 1 -1.6057 1.4898 3.8413 12 6 -1.3153 0.9226 5.8785 13 7 -0.4425 0.7363 6.8444 14 14 -3.1330 0.6280 6.1926 15 1 -3.6292 -0.4278 5.2738 16 1 -3.3282 0.1929 7.5989 17 1 -3.8865 1.8854 5.9548 18 7 2.7081 3.3173 0.7321 19 6 2.7331 3.3934 -0.6237 20 6 2.2877 2.1540 -1.1120 21 6 2.2070 1.9368 -2.4809 22 6 2.5648 2.9388 -3.3574 23 6 3.0065 4.1651 -2.8819 24 6 3.0933 4.3998 -1.5265 25 9 3.5237 5.5968 -1.0714 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.8565 2.1960 3.1521 32 1 2.2868 0.6092 2.5815 33 1 0.0745 1.5961 2.3847 34 1 0.5348 3.5856 5.1523 35 1 2.1489 2.8353 5.1442 36 1 0.9446 2.3439 6.3597 37 1 -0.7425 0.4455 7.7199 38 1 1.8641 0.9847 -2.8582 39 1 2.5009 2.7680 -4.4219 40 1 3.2834 4.9420 -3.5792 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602870466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:23 Heat of formation + Delta-G solvation = 24.936822 kcal Electronic energy + Delta-G solvation = -23013.773614 eV Core-core repulsion = 19550.531441 eV Total energy + Delta-G solvation = -3463.242173 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.72231 -42.17295 -37.50773 -35.91797 -35.02894 -32.78793 -30.97051 -30.21263 -29.25730 -28.30856 -25.66634 -24.80568 -24.02761 -22.40511 -21.84450 -20.07135 -19.76406 -17.74473 -17.48907 -16.74653 -16.00305 -15.98972 -15.57939 -15.16291 -14.93668 -14.74312 -14.34824 -14.16593 -13.61471 -13.46104 -13.19574 -12.86265 -12.43234 -12.38973 -12.16966 -11.86777 -11.72260 -11.52418 -11.38887 -11.25261 -10.94669 -10.84602 -10.39224 -10.25367 -10.18622 -10.10352 -9.90622 -8.94461 -8.56350 -8.42175 -7.96922 -7.47422 -6.10487 -4.17910 0.78525 1.31200 2.51710 2.79124 3.25583 3.31194 3.33795 3.65467 4.03841 4.23363 4.33401 4.47127 4.53975 4.82538 4.86360 4.98223 5.03681 5.14231 5.20019 5.23954 5.38936 5.49076 5.54510 5.67403 5.72540 5.92943 6.01320 6.05159 6.17806 6.31619 6.37970 6.75955 6.79858 7.08266 7.11798 7.14378 7.38090 7.67864 7.78327 7.98685 8.17455 8.22521 8.48919 8.89707 9.48347 10.95599 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.023005 B = 0.003830 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.833298 B = 7308.201255 C = 7919.261198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.105 3.895 3 N -0.486 5.486 4 C 0.310 3.690 5 C 0.133 3.867 6 N -0.676 5.676 7 C 0.214 3.786 8 H 0.005 0.995 9 C -0.126 4.126 10 C -0.522 4.522 11 H 0.059 0.941 12 C 0.065 3.935 13 N -0.888 5.888 14 Si 0.897 3.103 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.276 1.276 18 N -0.471 5.471 19 C 0.014 3.986 20 C 0.072 3.928 21 C -0.119 4.119 22 C -0.084 4.084 23 C -0.171 4.171 24 C 0.153 3.847 25 F -0.131 7.131 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.043 0.957 33 H 0.329 0.671 34 H 0.034 0.966 35 H 0.007 0.993 36 H 0.082 0.918 37 H 0.263 0.737 38 H 0.125 0.875 39 H 0.137 0.863 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.761 -2.180 -18.688 19.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.017 4.017 3 N -0.176 5.176 4 C 0.044 3.956 5 C 0.002 3.998 6 N -0.309 5.309 7 C 0.108 3.892 8 H 0.022 0.978 9 C -0.185 4.185 10 C -0.560 4.560 11 H 0.077 0.923 12 C -0.137 4.137 13 N -0.526 5.526 14 Si 0.725 3.275 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.201 1.201 18 N -0.190 5.190 19 C -0.106 4.106 20 C -0.039 4.039 21 C -0.140 4.140 22 C -0.104 4.104 23 C -0.192 4.192 24 C 0.132 3.868 25 F -0.109 7.109 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.061 0.939 33 H 0.148 0.852 34 H 0.053 0.947 35 H 0.026 0.974 36 H 0.101 0.899 37 H 0.073 0.927 38 H 0.143 0.857 39 H 0.154 0.846 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.145 -1.029 -17.711 18.775 hybrid contribution -1.249 -1.538 -0.315 2.006 sum 4.895 -2.567 -18.025 18.854 Atomic orbital electron populations 1.22239 0.93657 1.03498 1.03770 1.21856 0.96111 0.79177 1.04545 1.45591 1.54061 1.13113 1.04816 1.23994 0.94610 0.86020 0.90935 1.20531 0.96520 0.97741 0.84988 1.60805 0.99609 1.64254 1.06278 1.19169 0.96177 0.92470 0.81426 0.97780 1.21732 0.95539 0.98596 1.02613 1.21149 0.91861 1.45792 0.97245 0.92307 1.24889 0.97814 0.95100 0.95940 1.69878 1.33594 1.46188 1.02911 0.86573 0.85068 0.78656 0.77185 1.20338 1.21216 1.20124 1.70555 1.21706 1.17636 1.09082 1.18977 1.06568 0.93710 0.91349 1.18590 1.03789 0.92035 0.89440 1.19928 1.04951 1.00558 0.88602 1.20592 0.98669 0.91775 0.99380 1.20785 1.06339 0.99556 0.92528 1.16815 0.99400 0.79905 0.90714 1.91497 1.86869 1.42693 1.89832 0.90817 0.91957 0.90269 0.89233 0.88475 0.87872 0.93940 0.85218 0.94696 0.97378 0.89928 0.92724 0.85695 0.84566 0.84360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 10.24 37.16 0.38 -1.45 16 2 C 0.10 1.10 6.65 -4.04 -0.03 1.07 16 3 N -0.49 -6.89 2.81 -111.16 -0.31 -7.20 16 4 C 0.31 5.36 7.37 -154.80 -1.14 4.22 16 5 C 0.13 2.37 5.78 -4.97 -0.03 2.34 16 6 N -0.68 -14.11 6.29 -109.21 -0.69 -14.80 16 7 C 0.21 5.21 2.60 -68.87 -0.18 5.03 16 8 H 0.00 0.12 7.80 -51.93 -0.41 -0.29 16 9 C -0.13 -3.11 9.19 37.16 0.34 -2.77 16 10 C -0.52 -13.77 8.59 -34.44 -0.30 -14.07 16 11 H 0.06 1.53 7.62 -52.49 -0.40 1.13 16 12 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 13 N -0.89 -24.53 11.32 55.43 0.63 -23.91 16 14 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 N -0.47 -9.14 11.27 -8.19 -0.09 -9.23 16 19 C 0.01 0.24 7.21 -84.64 -0.61 -0.37 16 20 C 0.07 1.03 6.87 -84.00 -0.58 0.46 16 21 C -0.12 -1.29 10.04 -39.50 -0.40 -1.68 16 22 C -0.08 -0.80 10.02 -39.53 -0.40 -1.20 16 23 C -0.17 -1.91 9.99 -39.54 -0.40 -2.31 16 24 C 0.15 2.32 7.34 -39.10 -0.29 2.03 16 25 F -0.13 -2.13 17.27 2.25 0.04 -2.09 16 26 H 0.07 0.98 6.24 -51.93 -0.32 0.65 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.68 8.14 -51.92 -0.42 0.25 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.10 0.97 6.99 -51.93 -0.36 0.61 16 31 H 0.10 1.91 7.43 -51.93 -0.39 1.52 16 32 H 0.04 0.68 6.92 -51.93 -0.36 0.32 16 33 H 0.33 6.60 6.32 -39.29 -0.25 6.35 16 34 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.01 0.16 7.45 -51.93 -0.39 -0.22 16 36 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 37 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 39 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 334.93 15.07 5.05 5.05 Total: -1.00 -30.73 334.93 -9.39 -40.11 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.28 Total: 3.51 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -3.71 Total: -7.07 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.46 Total: -55.14 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.73 -9.39 -40.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.050 kcal (2) G-P(sol) polarization free energy of solvation -30.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds