Wall clock time and date at job start Tue Mar 31 2020 06:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.46833 * 2 1 4 4 C 1.36085 * 126.34469 * 90.00173 * 3 2 1 5 5 C 1.50706 * 124.95421 * 0.02695 * 4 3 2 6 6 N 1.46908 * 109.46935 * 269.71879 * 5 4 3 7 7 C 1.46894 * 110.99837 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47104 * 324.99694 * 7 6 5 9 9 C 1.52997 * 109.47515 * 84.99962 * 7 6 5 10 10 C 1.50708 * 109.46991 * 205.00145 * 7 6 5 11 11 H 1.08000 * 119.99723 * 359.97438 * 10 7 6 12 12 C 1.37873 * 119.99930 * 179.97438 * 10 7 6 13 13 N 1.31509 * 120.00195 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 119.99968 * 179.97438 * 12 10 7 15 15 H 1.48498 * 109.46680 * 60.00159 * 14 12 10 16 16 H 1.48492 * 109.47298 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.46944 * 300.00675 * 14 12 10 18 18 N 1.30081 * 110.09269 * 179.76174 * 4 3 2 19 19 C 1.35817 * 109.62996 * 0.23913 * 18 4 3 20 20 C 1.38070 * 126.34997 * 270.18217 * 3 2 1 21 21 C 1.38831 * 134.04299 * 359.96202 * 20 3 2 22 22 C 1.37854 * 119.87447 * 180.30801 * 21 20 3 23 23 C 1.38747 * 120.47639 * 0.02562 * 22 21 20 24 24 C 1.37834 * 120.49862 * 359.96915 * 23 22 21 25 25 F 1.35098 * 120.13910 * 180.02562 * 24 23 22 26 26 H 1.08993 * 109.47434 * 299.99294 * 1 2 3 27 27 H 1.09000 * 109.47490 * 59.99779 * 1 2 3 28 28 H 1.09010 * 109.46849 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46778 * 240.00546 * 2 1 3 30 30 H 1.09000 * 109.47490 * 120.00221 * 2 1 3 31 31 H 1.08993 * 109.47103 * 149.72020 * 5 4 3 32 32 H 1.09002 * 109.47193 * 29.71536 * 5 4 3 33 33 H 1.00898 * 110.99816 * 56.04381 * 6 5 4 34 34 H 1.09002 * 109.47153 * 59.99762 * 9 7 6 35 35 H 1.09001 * 109.46832 * 299.99953 * 9 7 6 36 36 H 1.09004 * 109.47261 * 179.97438 * 9 7 6 37 37 H 0.97006 * 120.00358 * 179.97438 * 13 12 10 38 38 H 1.07999 * 120.05796 * 0.33500 * 21 20 3 39 39 H 1.07999 * 119.76200 * 180.02562 * 22 21 20 40 40 H 1.07998 * 119.74532 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2871 2.1416 1.0961 5 6 2.1266 1.6858 2.5236 6 7 0.7706 2.0049 2.9900 7 6 0.5776 1.5746 4.3812 8 1 1.1310 0.6520 4.5562 9 6 1.0883 2.6630 5.3274 10 6 -0.8889 1.3364 4.6344 11 1 -1.6057 1.4898 3.8413 12 6 -1.3153 0.9226 5.8785 13 7 -0.4425 0.7363 6.8444 14 14 -3.1330 0.6280 6.1926 15 1 -3.6292 -0.4278 5.2738 16 1 -3.3282 0.1929 7.5989 17 1 -3.8865 1.8854 5.9548 18 7 2.7081 3.3173 0.7321 19 6 2.7331 3.3934 -0.6237 20 6 2.2877 2.1540 -1.1120 21 6 2.2070 1.9368 -2.4809 22 6 2.5648 2.9388 -3.3574 23 6 3.0065 4.1651 -2.8819 24 6 3.0933 4.3998 -1.5265 25 9 3.5237 5.5968 -1.0714 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.8565 2.1960 3.1521 32 1 2.2868 0.6092 2.5815 33 1 0.0745 1.5961 2.3847 34 1 0.5348 3.5856 5.1523 35 1 2.1489 2.8353 5.1442 36 1 0.9446 2.3439 6.3597 37 1 -0.7425 0.4455 7.7199 38 1 1.8641 0.9847 -2.8582 39 1 2.5009 2.7680 -4.4219 40 1 3.2834 4.9420 -3.5792 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602870466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:23 Heat of formation + Delta-G solvation = 6.288211 kcal Electronic energy + Delta-G solvation = -23014.582279 eV Core-core repulsion = 19550.531441 eV Total energy + Delta-G solvation = -3464.050837 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.85082 -43.26665 -38.58784 -37.55682 -36.03531 -34.66110 -32.02783 -31.62814 -30.22749 -29.76728 -27.51058 -26.49155 -24.92683 -23.39721 -22.95844 -21.87722 -20.99090 -18.75847 -18.74309 -18.38995 -17.23612 -17.12729 -16.81360 -16.53059 -16.23591 -15.95451 -15.79925 -15.25639 -15.13178 -14.75706 -14.41589 -14.02153 -13.80262 -13.71915 -13.29405 -13.13282 -12.90583 -12.77473 -12.73088 -12.63379 -12.43704 -12.30676 -12.24721 -12.18417 -11.96184 -11.31856 -11.09515 -10.94581 -10.58337 -9.47376 -9.18438 -8.99619 -8.14311 -6.28655 -0.22965 0.36685 1.42420 1.45428 1.49237 1.52655 1.64747 2.41143 2.66018 2.93218 3.14842 3.20401 3.45256 3.67089 3.68339 3.94815 4.03731 4.12568 4.13587 4.25990 4.36470 4.47575 4.49333 4.70062 4.79342 4.81460 4.82068 5.06525 5.13027 5.14791 5.20495 5.28170 5.31223 5.40231 5.40992 5.62711 5.80236 5.85351 6.05956 6.18373 6.36441 6.64398 6.82128 6.91330 7.41428 8.91144 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.023005 B = 0.003830 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.833298 B = 7308.201255 C = 7919.261198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.098 3.902 3 N -0.478 5.478 4 C 0.293 3.707 5 C 0.142 3.858 6 N -0.681 5.681 7 C 0.221 3.779 8 H -0.013 1.013 9 C -0.117 4.117 10 C -0.538 4.538 11 H 0.057 0.943 12 C 0.019 3.981 13 N -0.914 5.914 14 Si 0.960 3.040 15 H -0.266 1.266 16 H -0.284 1.284 17 H -0.277 1.277 18 N -0.519 5.519 19 C -0.031 4.031 20 C 0.065 3.935 21 C -0.112 4.112 22 C -0.067 4.067 23 C -0.152 4.152 24 C 0.110 3.890 25 F -0.150 7.150 26 H 0.039 0.961 27 H 0.066 0.934 28 H 0.102 0.898 29 H 0.127 0.873 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.334 0.666 34 H 0.021 0.979 35 H 0.021 0.979 36 H 0.062 0.938 37 H 0.264 0.736 38 H 0.163 0.837 39 H 0.187 0.813 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.992 -3.776 -22.173 23.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.022 4.022 3 N -0.168 5.168 4 C 0.026 3.974 5 C 0.011 3.989 6 N -0.315 5.315 7 C 0.113 3.887 8 H 0.004 0.996 9 C -0.175 4.175 10 C -0.576 4.576 11 H 0.075 0.925 12 C -0.181 4.181 13 N -0.553 5.553 14 Si 0.786 3.214 15 H -0.191 1.191 16 H -0.209 1.209 17 H -0.202 1.202 18 N -0.240 5.240 19 C -0.150 4.150 20 C -0.045 4.045 21 C -0.133 4.133 22 C -0.086 4.086 23 C -0.173 4.173 24 C 0.089 3.911 25 F -0.129 7.129 26 H 0.058 0.942 27 H 0.085 0.915 28 H 0.120 0.880 29 H 0.145 0.855 30 H 0.116 0.884 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.153 0.847 34 H 0.041 0.959 35 H 0.040 0.960 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.181 0.819 39 H 0.204 0.796 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 5.375 -2.643 -21.224 22.053 hybrid contribution -0.957 -1.023 0.601 1.524 sum 4.418 -3.666 -20.623 21.407 Atomic orbital electron populations 1.22204 0.93684 1.04506 1.02247 1.22193 0.96014 0.77508 1.06460 1.45680 1.53258 1.13961 1.03895 1.23544 0.96196 0.86472 0.91163 1.20348 0.94233 0.98660 0.85685 1.60623 1.01465 1.64505 1.04881 1.18936 0.95099 0.91404 0.83236 0.99561 1.21590 0.96298 0.98027 1.01606 1.21442 0.92864 1.45872 0.97470 0.92459 1.25657 1.01898 0.94829 0.95707 1.69997 1.35377 1.46736 1.03197 0.85577 0.80044 0.78586 0.77210 1.19097 1.20911 1.20227 1.70393 1.23086 1.19161 1.11310 1.19425 1.08810 0.95934 0.90818 1.19010 1.03749 0.90963 0.90778 1.20475 1.03527 1.02501 0.86770 1.21226 0.95723 0.90091 1.01586 1.21272 1.03923 1.01100 0.90994 1.17376 1.01969 0.79494 0.92248 1.91433 1.87453 1.43695 1.90291 0.94158 0.91532 0.87954 0.85530 0.88374 0.89350 0.92022 0.84682 0.95935 0.95972 0.91923 0.92696 0.81914 0.79618 0.81457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.23 10.24 71.98 0.74 -2.49 16 2 C 0.10 1.83 6.65 86.38 0.57 2.41 16 3 N -0.48 -13.14 2.81 -505.60 -1.42 -14.56 16 4 C 0.29 10.41 7.37 137.92 1.02 11.42 16 5 C 0.14 5.23 5.78 85.56 0.49 5.72 16 6 N -0.68 -29.41 6.29 -499.44 -3.14 -32.55 16 7 C 0.22 11.07 2.60 44.17 0.11 11.18 16 8 H -0.01 -0.69 7.80 -2.39 -0.02 -0.71 16 9 C -0.12 -5.96 9.19 71.98 0.66 -5.30 16 10 C -0.54 -28.87 8.59 25.60 0.22 -28.65 16 11 H 0.06 3.02 7.62 -2.91 -0.02 3.00 16 12 C 0.02 1.02 5.30 84.65 0.45 1.47 16 13 N -0.91 -51.37 11.32 21.44 0.24 -51.13 16 14 Si 0.96 42.41 29.54 68.60 2.03 44.44 16 15 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 16 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 17 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 18 N -0.52 -21.15 11.27 -179.82 -2.03 -23.18 16 19 C -0.03 -1.07 7.21 39.47 0.28 -0.78 16 20 C 0.07 1.77 6.87 38.84 0.27 2.04 16 21 C -0.11 -1.92 10.04 22.32 0.22 -1.70 16 22 C -0.07 -0.93 10.02 22.30 0.22 -0.70 16 23 C -0.15 -2.95 9.99 22.30 0.22 -2.73 16 24 C 0.11 3.34 7.34 22.58 0.17 3.50 16 25 F -0.15 -5.13 17.27 44.97 0.78 -4.35 16 26 H 0.04 1.05 6.24 -2.39 -0.01 1.03 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 28 H 0.10 1.46 8.14 -2.38 -0.02 1.45 16 29 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.10 1.81 6.99 -2.39 -0.02 1.79 16 31 H 0.09 3.47 7.43 -2.39 -0.02 3.45 16 32 H 0.06 2.01 6.92 -2.39 -0.02 1.99 16 33 H 0.33 13.81 6.32 -89.70 -0.57 13.24 16 34 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.02 1.01 7.45 -2.39 -0.02 0.99 16 36 H 0.06 3.44 6.07 -2.38 -0.01 3.42 16 37 H 0.26 14.12 8.31 -92.70 -0.77 13.35 16 38 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 39 H 0.19 0.83 8.06 -2.91 -0.02 0.81 16 40 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -70.84 334.93 2.61 -68.23 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.50 Total: 17.70 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 5.65 Total: -4.61 kcal Atomic # 7 Polarization: -115.07 SS G_CDS: -6.35 Total: -121.41 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.78 Total: -4.35 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -70.84 2.61 -68.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.516 kcal (2) G-P(sol) polarization free energy of solvation -70.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds