Wall clock time and date at job start Tue Mar 31 2020 06:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47206 * 2 1 4 4 C 1.36081 * 126.34546 * 89.99978 * 3 2 1 5 5 C 1.50701 * 124.96038 * 359.97438 * 4 3 2 6 6 N 1.46901 * 109.47109 * 270.00372 * 5 4 3 7 7 C 1.46902 * 110.99768 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.47532 * 34.99493 * 7 6 5 9 9 C 1.53002 * 109.46939 * 274.99676 * 7 6 5 10 10 C 1.50702 * 109.46903 * 155.00075 * 7 6 5 11 11 H 1.07997 * 120.00186 * 359.97438 * 10 7 6 12 12 C 1.37879 * 119.99929 * 179.97438 * 10 7 6 13 13 N 1.31512 * 119.99729 * 359.97438 * 12 10 7 14 14 Si 1.86794 * 120.00020 * 179.97438 * 12 10 7 15 15 H 1.48508 * 109.47217 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47176 * 119.99622 * 14 12 10 17 17 H 1.48496 * 109.47268 * 239.99928 * 14 12 10 18 18 N 1.30084 * 110.08888 * 179.97438 * 4 3 2 19 19 C 1.35816 * 109.63495 * 0.02562 * 18 4 3 20 20 C 1.38068 * 126.34592 * 269.99686 * 3 2 1 21 21 C 1.38833 * 134.04766 * 0.04891 * 20 3 2 22 22 C 1.37856 * 119.87951 * 179.97438 * 21 20 3 23 23 C 1.38744 * 120.47488 * 0.02773 * 22 21 20 24 24 C 1.37835 * 120.49620 * 359.97438 * 23 22 21 25 25 F 1.35102 * 120.13880 * 179.97438 * 24 23 22 26 26 H 1.08995 * 109.47574 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47224 * 300.00441 * 1 2 3 28 28 H 1.09011 * 109.46873 * 59.99923 * 1 2 3 29 29 H 1.08997 * 109.47224 * 239.99559 * 2 1 3 30 30 H 1.09005 * 109.47152 * 119.99722 * 2 1 3 31 31 H 1.09004 * 109.46795 * 29.99679 * 5 4 3 32 32 H 1.08997 * 109.47569 * 149.99887 * 5 4 3 33 33 H 1.00899 * 110.99683 * 303.94751 * 6 5 4 34 34 H 1.09010 * 109.46724 * 300.00375 * 9 7 6 35 35 H 1.09001 * 109.47211 * 59.99939 * 9 7 6 36 36 H 1.08997 * 109.47139 * 180.02562 * 9 7 6 37 37 H 0.97004 * 119.99505 * 180.02562 * 13 12 10 38 38 H 1.08001 * 120.06045 * 359.92383 * 21 20 3 39 39 H 1.07994 * 119.76154 * 179.97438 * 22 21 20 40 40 H 1.08004 * 119.75023 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2872 2.1416 1.0961 5 6 2.1256 1.6864 2.5236 6 7 0.7675 2.0006 2.9870 7 6 0.5730 1.5695 4.3778 8 1 1.5020 1.7014 4.9324 9 6 0.1693 0.0939 4.4027 10 6 -0.5135 2.3982 5.0133 11 1 -1.0096 3.1684 4.4413 12 6 -0.8743 2.1732 6.3249 13 7 -0.2705 1.2350 7.0212 14 14 -2.2205 3.2009 7.1127 15 1 -2.7365 4.1822 6.1247 16 1 -3.3266 2.3136 7.5537 17 1 -1.6684 3.9243 8.2862 18 7 2.7040 3.3188 0.7319 19 6 2.7305 3.3943 -0.6239 20 6 2.2911 2.1527 -1.1121 21 6 2.2132 1.9345 -2.4809 22 6 2.5677 2.9377 -3.3575 23 6 3.0032 4.1662 -2.8821 24 6 3.0874 4.4018 -1.5267 25 9 3.5130 5.6005 -1.0716 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.2898 0.6104 2.5826 32 1 2.8522 2.1998 3.1532 33 1 0.5680 2.9840 2.8817 34 1 -0.7597 -0.0380 3.8480 35 1 0.9552 -0.5056 3.9430 36 1 0.0246 -0.2259 5.4346 37 1 -0.5246 1.0765 7.9438 38 1 1.8762 0.9803 -2.8583 39 1 2.5067 2.7658 -4.4220 40 1 3.2784 4.9437 -3.5794 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602870467.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:26 Heat of formation + Delta-G solvation = 22.947795 kcal Electronic energy + Delta-G solvation = -23013.446446 eV Core-core repulsion = 19550.118023 eV Total energy + Delta-G solvation = -3463.328423 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.72693 -42.15027 -37.47151 -35.90342 -34.95860 -32.76286 -30.91411 -30.20376 -29.21268 -28.29447 -25.69783 -24.78447 -23.92727 -22.39473 -21.80098 -20.03543 -19.73810 -17.77177 -17.50985 -16.61403 -16.01156 -15.97353 -15.54206 -15.19620 -14.86231 -14.69534 -14.14231 -13.99953 -13.70954 -13.58669 -13.10221 -12.79725 -12.42853 -12.31620 -12.21691 -11.77200 -11.70222 -11.51148 -11.31425 -11.18267 -10.95221 -10.78507 -10.43551 -10.23684 -10.22638 -10.08880 -9.94414 -8.93260 -8.55784 -8.40511 -7.96810 -7.49793 -6.09185 -4.15378 0.79208 1.32711 2.57242 2.79823 3.26537 3.34750 3.39596 3.65370 4.03579 4.24362 4.36674 4.53026 4.60909 4.84864 4.99875 5.01957 5.14914 5.19828 5.22504 5.31602 5.38847 5.56958 5.66070 5.77343 5.79896 5.94124 5.98648 6.18861 6.29952 6.34815 6.43706 6.71413 6.77594 6.98910 7.06542 7.14744 7.33770 7.70926 7.76621 7.95734 8.14731 8.21780 8.50165 8.92953 9.51021 10.97243 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021196 B = 0.003881 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.712688 B = 7212.430920 C = 7965.311482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.111 3.889 3 N -0.476 5.476 4 C 0.314 3.686 5 C 0.131 3.869 6 N -0.680 5.680 7 C 0.212 3.788 8 H 0.006 0.994 9 C -0.124 4.124 10 C -0.518 4.518 11 H 0.061 0.939 12 C 0.063 3.937 13 N -0.890 5.890 14 Si 0.897 3.103 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 N -0.488 5.488 19 C 0.015 3.985 20 C 0.072 3.928 21 C -0.118 4.118 22 C -0.085 4.085 23 C -0.170 4.170 24 C 0.151 3.849 25 F -0.131 7.131 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.341 0.659 34 H 0.032 0.968 35 H 0.003 0.997 36 H 0.083 0.917 37 H 0.261 0.739 38 H 0.125 0.875 39 H 0.136 0.864 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.382 -2.942 -18.915 19.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.010 4.010 3 N -0.165 5.165 4 C 0.048 3.952 5 C 0.000 4.000 6 N -0.314 5.314 7 C 0.105 3.895 8 H 0.024 0.976 9 C -0.182 4.182 10 C -0.556 4.556 11 H 0.079 0.921 12 C -0.139 4.139 13 N -0.528 5.528 14 Si 0.725 3.275 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 N -0.207 5.207 19 C -0.105 4.105 20 C -0.039 4.039 21 C -0.139 4.139 22 C -0.105 4.105 23 C -0.192 4.192 24 C 0.130 3.870 25 F -0.110 7.110 26 H 0.091 0.909 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.159 0.841 34 H 0.051 0.949 35 H 0.022 0.978 36 H 0.101 0.899 37 H 0.071 0.929 38 H 0.143 0.857 39 H 0.154 0.846 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.307 -3.045 -18.401 19.391 hybrid contribution -0.392 0.691 0.511 0.945 sum 4.915 -2.354 -17.889 18.701 Atomic orbital electron populations 1.22202 0.93449 1.03108 1.04364 1.21799 0.96441 0.78779 1.04005 1.45500 1.53147 1.13303 1.04525 1.23975 0.94027 0.85957 0.91282 1.20493 0.94507 1.00718 0.84326 1.60851 1.19835 1.24063 1.26624 1.19164 0.95941 0.93440 0.80921 0.97628 1.21734 0.97390 0.96608 1.02497 1.21245 1.19742 1.18097 0.96558 0.92066 1.24893 0.96599 0.95318 0.97063 1.69893 1.41800 1.31610 1.09531 0.86450 0.81627 0.80166 0.79241 1.19715 1.20979 1.21021 1.70537 1.22656 1.18014 1.09507 1.18918 1.06708 0.93665 0.91202 1.18609 1.03783 0.92022 0.89523 1.19938 1.04813 1.00533 0.88632 1.20589 0.98777 0.91757 0.99382 1.20780 1.06351 0.99526 0.92518 1.16813 0.99644 0.79839 0.90735 1.91494 1.87060 1.42592 1.89836 0.90881 0.89241 0.92626 0.89791 0.88533 0.89662 0.92049 0.84131 0.94877 0.97826 0.89870 0.92905 0.85668 0.84577 0.84391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 10.24 37.16 0.38 -1.58 16 2 C 0.11 1.21 6.65 -4.04 -0.03 1.19 16 3 N -0.48 -6.83 2.81 -111.16 -0.31 -7.14 16 4 C 0.31 5.34 7.37 -154.80 -1.14 4.20 16 5 C 0.13 2.28 5.77 -4.97 -0.03 2.25 16 6 N -0.68 -13.77 6.29 -109.22 -0.69 -14.46 16 7 C 0.21 5.07 2.60 -68.86 -0.18 4.89 16 8 H 0.01 0.16 7.80 -51.93 -0.41 -0.25 16 9 C -0.12 -2.83 9.19 37.16 0.34 -2.49 16 10 C -0.52 -13.79 8.59 -34.44 -0.30 -14.08 16 11 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 12 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 13 N -0.89 -24.65 11.32 55.43 0.63 -24.03 16 14 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 15 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 18 N -0.49 -9.25 11.27 -8.19 -0.09 -9.34 16 19 C 0.02 0.26 7.21 -84.64 -0.61 -0.35 16 20 C 0.07 1.03 6.87 -84.00 -0.58 0.46 16 21 C -0.12 -1.29 10.04 -39.50 -0.40 -1.69 16 22 C -0.09 -0.81 10.02 -39.53 -0.40 -1.21 16 23 C -0.17 -1.91 9.99 -39.54 -0.40 -2.31 16 24 C 0.15 2.28 7.34 -39.11 -0.29 1.99 16 25 F -0.13 -2.14 17.27 2.25 0.04 -2.10 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 28 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 1.01 7.00 -51.93 -0.36 0.65 16 31 H 0.09 1.35 6.31 -51.93 -0.33 1.02 16 32 H 0.06 1.12 8.06 -51.93 -0.42 0.70 16 33 H 0.34 7.31 8.22 -39.29 -0.32 6.98 16 34 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16 35 H 0.00 0.06 7.45 -51.93 -0.39 -0.33 16 36 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 37 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 38 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 338.72 15.07 5.10 5.10 Total: -1.00 -29.91 338.72 -9.50 -39.41 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -5.46 Total: 3.68 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -3.71 Total: -7.13 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -0.46 Total: -54.96 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.91 -9.50 -39.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870467.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.360 kcal (2) G-P(sol) polarization free energy of solvation -29.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds