Wall clock time and date at job start Tue Mar 31 2020 06:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47206 * 2 1 4 4 C 1.36081 * 126.34546 * 89.99978 * 3 2 1 5 5 C 1.50701 * 124.96038 * 359.97438 * 4 3 2 6 6 N 1.46901 * 109.47109 * 270.00372 * 5 4 3 7 7 C 1.46902 * 110.99768 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.47532 * 34.99493 * 7 6 5 9 9 C 1.53002 * 109.46939 * 274.99676 * 7 6 5 10 10 C 1.50702 * 109.46903 * 155.00075 * 7 6 5 11 11 H 1.07997 * 120.00186 * 359.97438 * 10 7 6 12 12 C 1.37879 * 119.99929 * 179.97438 * 10 7 6 13 13 N 1.31512 * 119.99729 * 359.97438 * 12 10 7 14 14 Si 1.86794 * 120.00020 * 179.97438 * 12 10 7 15 15 H 1.48508 * 109.47217 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47176 * 119.99622 * 14 12 10 17 17 H 1.48496 * 109.47268 * 239.99928 * 14 12 10 18 18 N 1.30084 * 110.08888 * 179.97438 * 4 3 2 19 19 C 1.35816 * 109.63495 * 0.02562 * 18 4 3 20 20 C 1.38068 * 126.34592 * 269.99686 * 3 2 1 21 21 C 1.38833 * 134.04766 * 0.04891 * 20 3 2 22 22 C 1.37856 * 119.87951 * 179.97438 * 21 20 3 23 23 C 1.38744 * 120.47488 * 0.02773 * 22 21 20 24 24 C 1.37835 * 120.49620 * 359.97438 * 23 22 21 25 25 F 1.35102 * 120.13880 * 179.97438 * 24 23 22 26 26 H 1.08995 * 109.47574 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47224 * 300.00441 * 1 2 3 28 28 H 1.09011 * 109.46873 * 59.99923 * 1 2 3 29 29 H 1.08997 * 109.47224 * 239.99559 * 2 1 3 30 30 H 1.09005 * 109.47152 * 119.99722 * 2 1 3 31 31 H 1.09004 * 109.46795 * 29.99679 * 5 4 3 32 32 H 1.08997 * 109.47569 * 149.99887 * 5 4 3 33 33 H 1.00899 * 110.99683 * 303.94751 * 6 5 4 34 34 H 1.09010 * 109.46724 * 300.00375 * 9 7 6 35 35 H 1.09001 * 109.47211 * 59.99939 * 9 7 6 36 36 H 1.08997 * 109.47139 * 180.02562 * 9 7 6 37 37 H 0.97004 * 119.99505 * 180.02562 * 13 12 10 38 38 H 1.08001 * 120.06045 * 359.92383 * 21 20 3 39 39 H 1.07994 * 119.76154 * 179.97438 * 22 21 20 40 40 H 1.08004 * 119.75023 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2872 2.1416 1.0961 5 6 2.1256 1.6864 2.5236 6 7 0.7675 2.0006 2.9870 7 6 0.5730 1.5695 4.3778 8 1 1.5020 1.7014 4.9324 9 6 0.1693 0.0939 4.4027 10 6 -0.5135 2.3982 5.0133 11 1 -1.0096 3.1684 4.4413 12 6 -0.8743 2.1732 6.3249 13 7 -0.2705 1.2350 7.0212 14 14 -2.2205 3.2009 7.1127 15 1 -2.7365 4.1822 6.1247 16 1 -3.3266 2.3136 7.5537 17 1 -1.6684 3.9243 8.2862 18 7 2.7040 3.3188 0.7319 19 6 2.7305 3.3943 -0.6239 20 6 2.2911 2.1527 -1.1121 21 6 2.2132 1.9345 -2.4809 22 6 2.5677 2.9377 -3.3575 23 6 3.0032 4.1662 -2.8821 24 6 3.0874 4.4018 -1.5267 25 9 3.5130 5.6005 -1.0716 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.2898 0.6104 2.5826 32 1 2.8522 2.1998 3.1532 33 1 0.5680 2.9840 2.8817 34 1 -0.7597 -0.0380 3.8480 35 1 0.9552 -0.5056 3.9430 36 1 0.0246 -0.2259 5.4346 37 1 -0.5246 1.0765 7.9438 38 1 1.8762 0.9803 -2.8583 39 1 2.5067 2.7658 -4.4220 40 1 3.2784 4.9437 -3.5794 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602870467.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:25 Heat of formation + Delta-G solvation = 4.965473 kcal Electronic energy + Delta-G solvation = -23014.226218 eV Core-core repulsion = 19550.118023 eV Total energy + Delta-G solvation = -3464.108195 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.85440 -43.24584 -38.54307 -37.53892 -35.98290 -34.64780 -31.98666 -31.61478 -30.19196 -29.71652 -27.48908 -26.47712 -24.85318 -23.39080 -22.91668 -21.82184 -20.95278 -18.92828 -18.63496 -18.31561 -17.16124 -17.10265 -16.85646 -16.50578 -16.16237 -16.07288 -15.53478 -15.17762 -15.13029 -14.91778 -14.37070 -13.98084 -13.75848 -13.68376 -13.22658 -13.14457 -12.88813 -12.77537 -12.69045 -12.59782 -12.41956 -12.26806 -12.18873 -12.11710 -11.95500 -11.28978 -11.12472 -10.91623 -10.59561 -9.47707 -9.21668 -8.98797 -8.15527 -6.28468 -0.22415 0.37761 1.39599 1.42086 1.51651 1.54250 1.66498 2.40453 2.66149 2.92892 3.13871 3.21132 3.47868 3.71279 3.74720 3.96740 4.12970 4.15082 4.19766 4.29520 4.39479 4.50315 4.54848 4.72558 4.83439 4.88310 4.88921 5.08280 5.14024 5.18389 5.28475 5.32098 5.39221 5.44632 5.45493 5.63598 5.82777 5.85728 6.08352 6.21752 6.33306 6.60784 6.79972 6.89631 7.41384 8.89979 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021196 B = 0.003881 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.712688 B = 7212.430920 C = 7965.311482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.105 3.895 3 N -0.470 5.470 4 C 0.296 3.704 5 C 0.140 3.860 6 N -0.669 5.669 7 C 0.217 3.783 8 H -0.024 1.024 9 C -0.109 4.109 10 C -0.538 4.538 11 H 0.053 0.947 12 C 0.019 3.981 13 N -0.913 5.913 14 Si 0.958 3.042 15 H -0.272 1.272 16 H -0.277 1.277 17 H -0.281 1.281 18 N -0.532 5.532 19 C -0.028 4.028 20 C 0.064 3.936 21 C -0.112 4.112 22 C -0.068 4.068 23 C -0.152 4.152 24 C 0.109 3.891 25 F -0.150 7.150 26 H 0.096 0.904 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.122 0.878 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.046 0.954 33 H 0.330 0.670 34 H 0.031 0.969 35 H 0.031 0.969 36 H 0.057 0.943 37 H 0.263 0.737 38 H 0.163 0.837 39 H 0.186 0.814 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.914 -4.272 -22.195 23.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.015 4.015 3 N -0.158 5.158 4 C 0.030 3.970 5 C 0.009 3.991 6 N -0.301 5.301 7 C 0.109 3.891 8 H -0.006 1.006 9 C -0.168 4.168 10 C -0.576 4.576 11 H 0.071 0.929 12 C -0.181 4.181 13 N -0.552 5.552 14 Si 0.784 3.216 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.207 1.207 18 N -0.253 5.253 19 C -0.148 4.148 20 C -0.047 4.047 21 C -0.132 4.132 22 C -0.087 4.087 23 C -0.173 4.173 24 C 0.088 3.912 25 F -0.129 7.129 26 H 0.115 0.885 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.140 0.860 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.064 0.936 33 H 0.147 0.853 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.180 0.820 39 H 0.203 0.797 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 4.840 -4.399 -21.702 22.666 hybrid contribution -0.199 1.114 1.361 1.770 sum 4.640 -3.285 -20.341 21.120 Atomic orbital electron populations 1.22126 0.93737 1.04047 1.02498 1.22124 0.96098 0.77266 1.06030 1.45601 1.52422 1.14115 1.03702 1.23539 0.95601 0.86405 0.91464 1.20367 0.92303 1.01514 0.84946 1.60766 1.21923 1.23126 1.24238 1.18982 0.93837 0.94044 0.82233 1.00619 1.21507 0.98225 0.96011 1.01018 1.21540 1.20481 1.18435 0.97141 0.92927 1.25611 0.98577 0.96340 0.97542 1.70001 1.42842 1.32588 1.09782 0.85511 0.79199 0.78744 0.78184 1.19674 1.20216 1.20723 1.70388 1.23902 1.19417 1.11588 1.19366 1.08866 0.95808 0.90731 1.19030 1.03801 0.91002 0.90843 1.20477 1.03436 1.02469 0.86844 1.21216 0.95850 0.90094 1.01570 1.21266 1.03928 1.01058 0.91024 1.17366 1.02186 0.79432 0.92249 1.91433 1.87629 1.43567 1.90286 0.88498 0.93124 0.92380 0.86043 0.88262 0.87848 0.93596 0.85296 0.95010 0.95016 0.92439 0.92739 0.81985 0.79661 0.81493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.43 10.24 71.98 0.74 -2.69 16 2 C 0.10 2.02 6.65 86.38 0.57 2.60 16 3 N -0.47 -13.02 2.81 -505.60 -1.42 -14.44 16 4 C 0.30 10.40 7.37 137.92 1.02 11.42 16 5 C 0.14 5.06 5.77 85.56 0.49 5.55 16 6 N -0.67 -28.17 6.29 -499.45 -3.14 -31.31 16 7 C 0.22 10.72 2.60 44.17 0.11 10.83 16 8 H -0.02 -1.30 7.80 -2.39 -0.02 -1.32 16 9 C -0.11 -5.04 9.19 71.98 0.66 -4.37 16 10 C -0.54 -29.45 8.59 25.60 0.22 -29.23 16 11 H 0.05 2.91 7.62 -2.91 -0.02 2.88 16 12 C 0.02 1.04 5.30 84.66 0.45 1.49 16 13 N -0.91 -51.50 11.32 21.45 0.24 -51.26 16 14 Si 0.96 43.66 29.54 68.60 2.03 45.69 16 15 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 16 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 18 N -0.53 -21.24 11.27 -179.83 -2.03 -23.27 16 19 C -0.03 -0.98 7.21 39.47 0.28 -0.70 16 20 C 0.06 1.74 6.87 38.85 0.27 2.01 16 21 C -0.11 -1.95 10.04 22.32 0.22 -1.73 16 22 C -0.07 -0.95 10.02 22.30 0.22 -0.73 16 23 C -0.15 -2.96 9.99 22.30 0.22 -2.74 16 24 C 0.11 3.28 7.34 22.58 0.17 3.45 16 25 F -0.15 -5.11 17.27 44.97 0.78 -4.33 16 26 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.10 1.86 7.00 -2.38 -0.02 1.85 16 31 H 0.10 3.28 6.31 -2.38 -0.02 3.27 16 32 H 0.05 1.79 8.06 -2.39 -0.02 1.77 16 33 H 0.33 15.01 8.22 -89.70 -0.74 14.27 16 34 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.03 1.23 7.45 -2.39 -0.02 1.22 16 36 H 0.06 2.96 6.07 -2.39 -0.01 2.95 16 37 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 38 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 39 H 0.19 0.87 8.06 -2.91 -0.02 0.85 16 40 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -69.45 338.72 2.43 -67.01 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.32 Total: 16.75 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: 5.65 Total: -4.84 kcal Atomic # 7 Polarization: -113.93 SS G_CDS: -6.35 Total: -120.28 kcal Atomic # 9 Polarization: -5.11 SS G_CDS: 0.78 Total: -4.33 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -69.45 2.43 -67.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870467.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.977 kcal (2) G-P(sol) polarization free energy of solvation -69.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds