Wall clock time and date at job start Tue Mar 31 2020 06:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47075 * 2 1 4 4 C 1.53002 * 109.47336 * 240.00060 * 2 1 3 5 5 C 1.50697 * 109.47426 * 120.00057 * 2 1 3 6 6 N 1.31140 * 126.55016 * 60.24651 * 5 2 1 7 7 C 1.34491 * 105.61108 * 180.12463 * 6 5 2 8 8 C 1.50706 * 126.28691 * 179.90795 * 7 6 5 9 9 N 1.46504 * 109.46991 * 269.71676 * 8 7 6 10 10 C 1.35309 * 125.86726 * 124.99455 * 9 8 7 11 11 C 1.35347 * 106.17636 * 179.97438 * 10 9 8 12 12 C 1.50699 * 126.75778 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47476 * 124.99911 * 12 11 10 14 14 H 1.08002 * 120.00037 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00302 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99818 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00404 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47032 * 59.99392 * 17 15 13 19 19 H 1.48493 * 109.47319 * 179.97438 * 17 15 13 20 20 H 1.48509 * 109.46791 * 299.99754 * 17 15 13 21 21 N 1.33775 * 106.49621 * 0.02562 * 11 10 9 22 22 N 1.28635 * 108.88269 * 359.73025 * 21 11 10 23 23 N 1.29946 * 107.42990 * 359.64601 * 7 6 5 24 24 O 1.21300 * 110.24653 * 0.22675 * 23 7 6 25 25 H 1.08997 * 109.47390 * 299.99912 * 1 2 3 26 26 H 1.08995 * 109.47005 * 60.00074 * 1 2 3 27 27 H 1.09000 * 109.46879 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47512 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47432 * 300.00395 * 3 2 1 30 30 H 1.09003 * 109.47166 * 60.00195 * 3 2 1 31 31 H 1.09000 * 109.47284 * 299.99933 * 4 2 1 32 32 H 1.09004 * 109.46586 * 59.99963 * 4 2 1 33 33 H 1.08996 * 109.46917 * 179.97438 * 4 2 1 34 34 H 1.08994 * 109.46790 * 29.71277 * 8 7 6 35 35 H 1.08997 * 109.47305 * 149.71718 * 8 7 6 36 36 H 1.08001 * 126.91353 * 0.03195 * 10 9 8 37 37 H 1.08997 * 109.47706 * 245.00440 * 12 11 10 38 38 H 1.09008 * 109.46764 * 5.00172 * 12 11 10 39 39 H 0.97004 * 119.99953 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2304 6 7 1.7999 -1.9578 1.5617 7 6 2.4412 -2.1480 2.7284 8 6 2.4794 -3.4253 3.5273 9 7 1.3642 -3.4406 4.4773 10 6 0.4285 -4.4120 4.5859 11 6 -0.4030 -4.0251 5.5812 12 6 -1.6115 -4.7696 6.0873 13 6 -1.4839 -4.9833 7.5736 14 1 -0.6148 -4.6162 8.0993 15 6 -2.4766 -5.6473 8.2624 16 7 -3.5352 -6.0939 7.6224 17 14 -2.3188 -5.9115 10.1049 18 1 -2.2268 -4.5959 10.7875 19 1 -3.5096 -6.6453 10.6036 20 1 -1.0945 -6.7030 10.3883 21 7 0.0582 -2.8510 6.0267 22 7 1.1092 -2.5349 5.3556 23 7 3.0265 -1.0298 3.0376 24 8 2.8041 -0.1911 2.1900 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 -1.7489 -1.2493 32 1 1.6767 -0.2073 -2.1392 33 1 3.1300 -0.7208 -1.2494 34 1 2.3944 -4.2778 2.8536 35 1 3.4216 -3.4851 4.0721 36 1 0.3596 -5.3150 3.9974 37 1 -2.5098 -4.1883 5.8797 38 1 -1.6796 -5.7352 5.5860 39 1 -4.2335 -6.5614 8.1070 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603197526.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:24 Heat of formation + Delta-G solvation = 155.200511 kcal Electronic energy + Delta-G solvation = -22515.472133 eV Core-core repulsion = 19077.798579 eV Total energy + Delta-G solvation = -3437.673554 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.89936 -42.56624 -37.84423 -36.54309 -34.37724 -33.16618 -31.88391 -31.07650 -28.67251 -27.80326 -27.74905 -27.24604 -24.64815 -23.53420 -23.26314 -21.47585 -20.58191 -19.87134 -18.42774 -17.60357 -16.83585 -16.41163 -16.04684 -15.73521 -14.61880 -14.58967 -14.52730 -14.15103 -14.08605 -13.53129 -12.99797 -12.89770 -12.63460 -12.51623 -12.16844 -12.15883 -12.08797 -11.99743 -11.70561 -11.55046 -11.44691 -11.26973 -11.02540 -10.72525 -10.66587 -10.27220 -10.08681 -9.73071 -9.54202 -9.33468 -8.43656 -8.15781 -5.98311 -3.99040 0.87034 1.70729 2.12442 2.44432 2.88040 3.18987 3.39397 3.40982 3.42778 3.50901 3.65573 4.20283 4.30193 4.31184 4.51936 4.56362 4.82282 4.88779 5.09006 5.14717 5.15003 5.22754 5.26755 5.35259 5.37854 5.38459 5.48174 5.62479 5.68010 5.77581 5.79733 5.83772 6.02969 6.22736 7.04601 7.10063 7.52406 7.61731 7.88282 7.99357 8.37272 9.03984 9.24774 9.63744 11.12788 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.031387 B = 0.002992 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.886268 B = 9356.294849 C = 9655.702108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.030 3.970 3 C -0.151 4.151 4 C -0.140 4.140 5 C 0.188 3.812 6 N -0.465 5.465 7 C 0.149 3.851 8 C 0.221 3.779 9 N -0.308 5.308 10 C -0.073 4.073 11 C 0.036 3.964 12 C 0.093 3.907 13 C -0.505 4.505 14 H 0.058 0.942 15 C 0.057 3.943 16 N -0.898 5.898 17 Si 0.897 3.103 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.277 1.277 21 N -0.255 5.255 22 N -0.103 5.103 23 N -0.350 5.350 24 O 0.091 5.909 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.133 0.867 35 H 0.120 0.880 36 H 0.186 0.814 37 H 0.039 0.961 38 H 0.038 0.962 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.000 10.243 -21.694 27.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 C -0.209 4.209 4 C -0.198 4.198 5 C -0.033 4.033 6 N -0.198 5.198 7 C -0.125 4.125 8 C 0.097 3.903 9 N -0.105 5.105 10 C -0.221 4.221 11 C -0.100 4.100 12 C 0.054 3.946 13 C -0.543 4.543 14 H 0.077 0.923 15 C -0.144 4.144 16 N -0.538 5.538 17 Si 0.725 3.275 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.203 1.203 21 N -0.123 5.123 22 N -0.081 5.081 23 N -0.053 5.053 24 O 0.027 5.973 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.151 0.849 35 H 0.138 0.862 36 H 0.203 0.797 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.607 11.140 -20.362 26.905 hybrid contribution -0.177 -1.181 0.449 1.276 sum 13.430 9.959 -19.913 26.001 Atomic orbital electron populations 1.21947 0.90962 1.03926 1.03255 1.19292 0.97008 0.94805 0.86109 1.21981 1.02105 0.93049 1.03737 1.21923 1.01558 1.01340 0.94949 1.28841 0.91681 0.88737 0.94005 1.71810 1.21718 1.14420 1.11812 1.25477 0.97250 0.96829 0.92909 1.19820 0.89686 0.91888 0.88900 1.46983 1.21466 1.16477 1.25608 1.23411 0.94227 0.98171 1.06280 1.23071 1.00295 0.92865 0.93803 1.17736 0.87036 0.93482 0.96321 1.21005 1.05571 1.35697 0.92068 0.92329 1.24967 0.95164 0.95672 0.98556 1.69938 1.09062 1.38754 1.36045 0.86569 0.77274 0.78381 0.85301 1.20096 1.21295 1.20311 1.75099 1.03473 1.14036 1.19659 1.78303 1.14115 1.14501 1.01225 1.74704 1.20751 0.99741 1.10105 1.85324 1.51216 1.36020 1.24719 0.91801 0.90369 0.90969 0.91433 0.90393 0.91317 0.91004 0.90415 0.91990 0.84886 0.86169 0.79721 0.94267 0.94414 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 8.46 37.16 0.31 -0.72 16 2 C 0.03 0.21 0.99 -155.66 -0.15 0.06 16 3 C -0.15 -0.80 8.07 37.16 0.30 -0.50 16 4 C -0.14 -0.77 8.46 37.16 0.31 -0.45 16 5 C 0.19 2.07 6.60 -13.05 -0.09 1.98 16 6 N -0.46 -6.04 11.55 -9.87 -0.11 -6.15 16 7 C 0.15 2.06 7.59 -156.37 -1.19 0.88 16 8 C 0.22 2.75 7.08 -5.19 -0.04 2.71 16 9 N -0.31 -5.46 3.43 -62.44 -0.21 -5.68 16 10 C -0.07 -1.37 11.49 -17.05 -0.20 -1.56 16 11 C 0.04 0.85 6.44 -82.78 -0.53 0.32 16 12 C 0.09 2.47 5.55 -29.04 -0.16 2.31 16 13 C -0.50 -14.76 9.09 -34.44 -0.31 -15.07 16 14 H 0.06 1.75 7.74 -52.49 -0.41 1.34 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 16 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 17 Si 0.90 22.35 29.54 -169.99 -5.02 17.33 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 N -0.25 -6.34 12.40 33.29 0.41 -5.92 16 22 N -0.10 -2.24 12.93 60.35 0.78 -1.46 16 23 N -0.35 -5.09 12.16 30.90 0.38 -4.72 16 24 O 0.09 1.14 10.77 18.11 0.20 1.34 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.13 1.16 8.07 -51.93 -0.42 0.75 16 35 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.19 2.67 8.06 -52.49 -0.42 2.25 16 37 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.04 0.98 8.12 -51.92 -0.42 0.56 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 342.51 15.07 5.16 5.16 Total: -1.00 -35.90 342.51 -4.98 -40.88 By element: Atomic # 1 Polarization: -0.72 SS G_CDS: -5.46 Total: -6.18 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -1.84 Total: -8.48 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: 1.98 Total: -50.06 kcal Atomic # 8 Polarization: 1.14 SS G_CDS: 0.20 Total: 1.34 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.90 -4.98 -40.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603197526.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.083 kcal (2) G-P(sol) polarization free energy of solvation -35.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds