Wall clock time and date at job start Tue Mar 31 2020 06:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47075 * 2 1 4 4 C 1.53002 * 109.47336 * 240.00060 * 2 1 3 5 5 C 1.50697 * 109.47426 * 120.00057 * 2 1 3 6 6 N 1.31140 * 126.55016 * 60.24651 * 5 2 1 7 7 C 1.34491 * 105.61108 * 180.12463 * 6 5 2 8 8 C 1.50706 * 126.28691 * 179.90795 * 7 6 5 9 9 N 1.46504 * 109.46991 * 269.71676 * 8 7 6 10 10 C 1.35309 * 125.86726 * 124.99455 * 9 8 7 11 11 C 1.35347 * 106.17636 * 179.97438 * 10 9 8 12 12 C 1.50699 * 126.75778 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47476 * 124.99911 * 12 11 10 14 14 H 1.08002 * 120.00037 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00302 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99818 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00404 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47032 * 59.99392 * 17 15 13 19 19 H 1.48493 * 109.47319 * 179.97438 * 17 15 13 20 20 H 1.48509 * 109.46791 * 299.99754 * 17 15 13 21 21 N 1.33775 * 106.49621 * 0.02562 * 11 10 9 22 22 N 1.28635 * 108.88269 * 359.73025 * 21 11 10 23 23 N 1.29946 * 107.42990 * 359.64601 * 7 6 5 24 24 O 1.21300 * 110.24653 * 0.22675 * 23 7 6 25 25 H 1.08997 * 109.47390 * 299.99912 * 1 2 3 26 26 H 1.08995 * 109.47005 * 60.00074 * 1 2 3 27 27 H 1.09000 * 109.46879 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47512 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47432 * 300.00395 * 3 2 1 30 30 H 1.09003 * 109.47166 * 60.00195 * 3 2 1 31 31 H 1.09000 * 109.47284 * 299.99933 * 4 2 1 32 32 H 1.09004 * 109.46586 * 59.99963 * 4 2 1 33 33 H 1.08996 * 109.46917 * 179.97438 * 4 2 1 34 34 H 1.08994 * 109.46790 * 29.71277 * 8 7 6 35 35 H 1.08997 * 109.47305 * 149.71718 * 8 7 6 36 36 H 1.08001 * 126.91353 * 0.03195 * 10 9 8 37 37 H 1.08997 * 109.47706 * 245.00440 * 12 11 10 38 38 H 1.09008 * 109.46764 * 5.00172 * 12 11 10 39 39 H 0.97004 * 119.99953 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2304 6 7 1.7999 -1.9578 1.5617 7 6 2.4412 -2.1480 2.7284 8 6 2.4794 -3.4253 3.5273 9 7 1.3642 -3.4406 4.4773 10 6 0.4285 -4.4120 4.5859 11 6 -0.4030 -4.0251 5.5812 12 6 -1.6115 -4.7696 6.0873 13 6 -1.4839 -4.9833 7.5736 14 1 -0.6148 -4.6162 8.0993 15 6 -2.4766 -5.6473 8.2624 16 7 -3.5352 -6.0939 7.6224 17 14 -2.3188 -5.9115 10.1049 18 1 -2.2268 -4.5959 10.7875 19 1 -3.5096 -6.6453 10.6036 20 1 -1.0945 -6.7030 10.3883 21 7 0.0582 -2.8510 6.0267 22 7 1.1092 -2.5349 5.3556 23 7 3.0265 -1.0298 3.0376 24 8 2.8041 -0.1911 2.1900 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 -1.7489 -1.2493 32 1 1.6767 -0.2073 -2.1392 33 1 3.1300 -0.7208 -1.2494 34 1 2.3944 -4.2778 2.8536 35 1 3.4216 -3.4851 4.0721 36 1 0.3596 -5.3150 3.9974 37 1 -2.5098 -4.1883 5.8797 38 1 -1.6796 -5.7352 5.5860 39 1 -4.2335 -6.5614 8.1070 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603197526.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:21 Heat of formation + Delta-G solvation = 129.303382 kcal Electronic energy + Delta-G solvation = -22516.595117 eV Core-core repulsion = 19077.798579 eV Total energy + Delta-G solvation = -3438.796538 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -46.88209 -44.16703 -38.46033 -37.60862 -35.90206 -35.02764 -33.00218 -32.87617 -29.98390 -29.13013 -28.29598 -28.20919 -25.63356 -25.40485 -24.45816 -22.87245 -22.07179 -20.86533 -19.46477 -18.63249 -18.47742 -18.01922 -17.52208 -16.61039 -16.54219 -15.72522 -15.42705 -15.11570 -14.97309 -14.77155 -14.41953 -14.12243 -13.74417 -13.66582 -13.43654 -13.06972 -12.94115 -12.83310 -12.76367 -12.67052 -12.65330 -12.53600 -12.23300 -12.15917 -11.94924 -11.93265 -11.73172 -11.46995 -11.16175 -11.08377 -10.60088 -9.95308 -8.20100 -6.28933 -0.08895 0.55443 0.74165 1.39243 1.42883 1.50381 1.62585 1.67093 1.70443 2.25371 2.43356 2.73880 3.12653 3.34991 3.63004 3.75718 3.79140 3.87615 3.92662 4.09589 4.22263 4.38120 4.39394 4.63061 4.66155 4.70114 4.76034 4.80315 4.90822 4.91986 4.98284 5.20954 5.23775 5.28914 5.35564 5.38385 5.50303 5.62985 5.75055 6.20111 6.78789 6.92595 7.37646 7.59043 8.90736 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.031387 B = 0.002992 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.886268 B = 9356.294849 C = 9655.702108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.029 3.971 3 C -0.149 4.149 4 C -0.135 4.135 5 C 0.195 3.805 6 N -0.483 5.483 7 C 0.138 3.862 8 C 0.210 3.790 9 N -0.291 5.291 10 C -0.036 4.036 11 C -0.007 4.007 12 C 0.104 3.896 13 C -0.526 4.526 14 H 0.044 0.956 15 C 0.010 3.990 16 N -0.926 5.926 17 Si 0.961 3.039 18 H -0.277 1.277 19 H -0.275 1.275 20 H -0.267 1.267 21 N -0.302 5.302 22 N -0.121 5.121 23 N -0.376 5.376 24 O 0.088 5.912 25 H 0.046 0.954 26 H 0.108 0.892 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.178 0.822 35 H 0.143 0.857 36 H 0.234 0.766 37 H 0.007 0.993 38 H 0.038 0.962 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.250 9.920 -23.436 29.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.026 3.974 3 C -0.207 4.207 4 C -0.193 4.193 5 C -0.025 4.025 6 N -0.216 5.216 7 C -0.135 4.135 8 C 0.089 3.911 9 N -0.088 5.088 10 C -0.185 4.185 11 C -0.144 4.144 12 C 0.065 3.935 13 C -0.565 4.565 14 H 0.062 0.938 15 C -0.189 4.189 16 N -0.566 5.566 17 Si 0.786 3.214 18 H -0.203 1.203 19 H -0.199 1.199 20 H -0.192 1.192 21 N -0.169 5.169 22 N -0.100 5.100 23 N -0.081 5.081 24 O 0.025 5.975 25 H 0.066 0.934 26 H 0.127 0.873 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.123 0.877 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.123 0.877 33 H 0.084 0.916 34 H 0.195 0.805 35 H 0.161 0.839 36 H 0.250 0.750 37 H 0.025 0.975 38 H 0.057 0.943 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.888 10.843 -22.127 28.789 hybrid contribution -0.519 -1.027 0.830 1.419 sum 14.369 9.815 -21.297 27.502 Atomic orbital electron populations 1.21967 0.90998 1.03031 1.03968 1.19643 0.96831 0.95801 0.85079 1.22013 1.02395 0.91711 1.04553 1.21931 1.01785 1.00729 0.94855 1.29757 0.90160 0.88427 0.94148 1.71822 1.22338 1.15493 1.11899 1.25731 0.97363 0.97074 0.93366 1.20494 0.88696 0.93066 0.88839 1.47313 1.21744 1.14965 1.24767 1.23875 0.92012 0.98708 1.03951 1.22750 1.01308 0.93666 0.96703 1.17393 0.87500 0.93287 0.95292 1.21243 1.05414 1.36085 0.93730 0.93784 1.25778 0.94696 0.95185 1.03198 1.70030 1.09617 1.39084 1.37862 0.85566 0.77979 0.78265 0.79613 1.20288 1.19938 1.19243 1.75006 1.05061 1.15244 1.21608 1.78188 1.13664 1.15776 1.02360 1.74686 1.21947 1.00328 1.11143 1.85291 1.51604 1.35729 1.24886 0.93442 0.87311 0.92633 0.91028 0.87710 0.92402 0.92209 0.87701 0.91639 0.80489 0.83879 0.74996 0.97494 0.94334 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.46 71.98 0.61 -1.25 16 2 C 0.03 0.36 0.99 -52.93 -0.05 0.31 16 3 C -0.15 -1.26 8.07 71.98 0.58 -0.68 16 4 C -0.14 -1.15 8.46 71.98 0.61 -0.54 16 5 C 0.20 4.12 6.60 88.38 0.58 4.71 16 6 N -0.48 -11.99 11.55 -303.21 -3.50 -15.50 16 7 C 0.14 3.65 7.59 138.47 1.05 4.70 16 8 C 0.21 4.68 7.08 85.63 0.61 5.29 16 9 N -0.29 -9.86 3.43 -351.46 -1.20 -11.06 16 10 C -0.04 -1.28 11.49 83.49 0.96 -0.32 16 11 C -0.01 -0.32 6.44 41.59 0.27 -0.05 16 12 C 0.10 5.69 5.55 29.10 0.16 5.85 16 13 C -0.53 -31.53 9.09 25.60 0.23 -31.30 16 14 H 0.04 2.70 7.74 -2.91 -0.02 2.68 16 15 C 0.01 0.58 5.46 84.65 0.46 1.04 16 16 N -0.93 -55.92 13.29 21.45 0.28 -55.64 16 17 Si 0.96 46.08 29.54 68.60 2.03 48.11 16 18 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 19 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 21 N -0.30 -15.41 12.40 -48.60 -0.60 -16.01 16 22 N -0.12 -5.31 12.93 37.02 0.48 -4.83 16 23 N -0.38 -10.77 12.16 -60.33 -0.73 -11.50 16 24 O 0.09 2.17 10.77 74.87 0.81 2.97 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.05 0.91 8.14 -2.39 -0.02 0.90 16 28 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.18 2.34 8.07 -2.39 -0.02 2.32 16 35 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.23 5.77 8.06 -2.91 -0.02 5.75 16 37 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.04 2.05 8.12 -2.38 -0.02 2.03 16 39 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -81.00 342.51 4.67 -76.33 By element: Atomic # 1 Polarization: -1.67 SS G_CDS: 1.05 Total: -0.62 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 6.07 Total: -12.24 kcal Atomic # 7 Polarization: -109.26 SS G_CDS: -5.28 Total: -114.54 kcal Atomic # 8 Polarization: 2.17 SS G_CDS: 0.81 Total: 2.97 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -81.00 4.67 -76.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603197526.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.630 kcal (2) G-P(sol) polarization free energy of solvation -81.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds