Wall clock time and date at job start Tue Mar 31 2020 06:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.50705 * 109.47390 * 184.99865 * 4 2 1 6 6 N 1.29952 * 126.28450 * 90.02239 * 5 4 2 7 7 O 1.21296 * 110.24822 * 179.97438 * 6 5 4 8 8 C 1.33647 * 109.81321 * 0.02562 * 7 6 5 9 9 C 1.50700 * 126.55001 * 179.97438 * 8 7 6 10 10 N 1.46503 * 109.47146 * 269.97350 * 9 8 7 11 11 C 1.35311 * 125.86798 * 124.99931 * 10 9 8 12 12 C 1.35346 * 106.17601 * 179.97438 * 11 10 9 13 13 C 1.50699 * 126.75259 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47038 * 125.00629 * 13 12 11 15 15 H 1.07996 * 120.00249 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99790 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00134 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99915 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46900 * 89.99667 * 18 16 14 20 20 H 1.48495 * 109.47212 * 209.99654 * 18 16 14 21 21 H 1.48503 * 109.47052 * 330.00071 * 18 16 14 22 22 N 1.33776 * 106.49927 * 0.02562 * 12 11 10 23 23 N 1.28635 * 108.87932 * 359.72848 * 22 12 11 24 24 N 1.31125 * 106.89480 * 359.76812 * 8 7 6 25 25 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 26 26 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 28 28 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 29 29 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 31 31 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 32 32 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 33 33 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 34 34 H 1.08995 * 109.47179 * 29.97495 * 9 8 7 35 35 H 1.08996 * 109.47105 * 149.97350 * 9 8 7 36 36 H 1.08002 * 126.91238 * 0.02645 * 11 10 9 37 37 H 1.09003 * 109.47258 * 245.00174 * 13 12 11 38 38 H 1.09001 * 109.47455 * 5.00032 * 13 12 11 39 39 H 0.96995 * 119.99750 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5419 -0.8294 -1.1891 6 7 4.2223 -1.8038 -0.6633 7 8 5.4116 -1.5937 -0.7755 8 6 5.6089 -0.4298 -1.4021 9 6 6.9388 0.1951 -1.7369 10 7 7.3679 1.0529 -0.6295 11 6 8.5462 0.9661 0.0300 12 6 8.5262 1.9419 0.9677 13 6 9.6126 2.2585 1.9630 14 6 10.0010 3.7092 1.8381 15 1 9.5106 4.3388 1.1105 16 6 10.9834 4.2323 2.6521 17 7 11.5810 3.4655 3.5377 18 14 11.4654 6.0304 2.4968 19 1 10.6235 6.8488 3.4060 20 1 12.8947 6.1933 2.8652 21 1 11.2611 6.4784 1.0958 22 7 7.3519 2.5694 0.8381 23 7 6.6911 2.0222 -0.1204 24 7 4.4243 0.0624 -1.6737 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6768 1.9562 0.8901 32 1 1.6053 -1.7198 -1.2953 33 1 1.7516 -0.1582 -2.1370 34 1 7.6787 -0.5891 -1.8968 35 1 6.8414 0.7929 -2.6430 36 1 9.3428 0.2607 -0.1552 37 1 9.2484 2.0655 2.9721 38 1 10.4816 1.6312 1.7642 39 1 12.2722 3.8334 4.1100 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603204572.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:54 Heat of formation + Delta-G solvation = 153.813034 kcal Electronic energy + Delta-G solvation = -22431.857817 eV Core-core repulsion = 18994.124097 eV Total energy + Delta-G solvation = -3437.733719 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = -0.62 seconds Orbital eigenvalues (eV) -45.88395 -42.66840 -37.49118 -35.92463 -34.89586 -33.39111 -32.33191 -31.14104 -28.67759 -28.25872 -27.37874 -27.27328 -24.00395 -23.51444 -22.63985 -21.42239 -20.62633 -19.98058 -18.46223 -17.79396 -16.91360 -16.63317 -16.07247 -15.52157 -14.97308 -14.55805 -14.46027 -14.25385 -14.22020 -13.76491 -13.05470 -12.66086 -12.59147 -12.43149 -12.26431 -12.13960 -11.97001 -11.76031 -11.44181 -11.27113 -11.13933 -11.06546 -10.97077 -10.77666 -10.69012 -10.29463 -10.12069 -9.79084 -9.62790 -9.37276 -8.48665 -8.21868 -6.01334 -4.02210 0.70113 1.81978 1.95791 2.44622 2.73490 3.27520 3.35259 3.36524 3.42299 3.48199 3.70112 4.27795 4.42577 4.49770 4.53150 4.68244 4.73114 4.84384 5.03937 5.19652 5.25238 5.34977 5.35543 5.41172 5.50465 5.64217 5.68629 5.71917 5.72000 5.90013 5.94584 6.03307 6.11474 6.22992 6.92307 7.02258 7.48148 7.57242 7.86278 7.96431 8.33242 9.01069 9.15719 9.60936 11.09761 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.023758 B = 0.003159 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.247414 B = 8861.724187 C = 9519.052475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.025 4.025 5 C 0.176 3.824 6 N -0.377 5.377 7 O 0.087 5.913 8 C 0.159 3.841 9 C 0.225 3.775 10 N -0.316 5.316 11 C -0.076 4.076 12 C 0.039 3.961 13 C 0.091 3.909 14 C -0.505 4.505 15 H 0.059 0.941 16 C 0.057 3.943 17 N -0.898 5.898 18 Si 0.897 3.103 19 H -0.279 1.279 20 H -0.287 1.287 21 H -0.274 1.274 22 N -0.251 5.251 23 N -0.095 5.095 24 N -0.441 5.441 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.189 0.811 37 H 0.040 0.960 38 H 0.039 0.961 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.666 -12.139 -12.828 23.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.207 4.207 4 C -0.064 4.064 5 C -0.097 4.097 6 N -0.082 5.082 7 O 0.027 5.973 8 C -0.064 4.064 9 C 0.100 3.900 10 N -0.113 5.113 11 C -0.223 4.223 12 C -0.097 4.097 13 C 0.053 3.947 14 C -0.544 4.544 15 H 0.078 0.922 16 C -0.144 4.144 17 N -0.537 5.537 18 Si 0.725 3.275 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.199 1.199 22 N -0.120 5.120 23 N -0.073 5.073 24 N -0.174 5.174 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.158 0.842 35 H 0.157 0.843 36 H 0.206 0.794 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.521 -11.767 -12.554 24.558 hybrid contribution 1.529 0.255 -0.089 1.552 sum -15.993 -11.513 -12.644 23.413 Atomic orbital electron populations 1.21810 0.94069 1.01868 1.02424 1.21119 0.96240 0.97175 0.96664 1.21871 1.02141 0.94676 1.01966 1.20154 0.82590 1.02832 1.00807 1.25887 1.00285 0.87095 0.96451 1.74638 0.89094 1.23776 1.20696 1.85318 1.20473 1.35219 1.56306 1.28461 0.97701 0.85586 0.94643 1.20030 0.87414 0.93626 0.88898 1.47004 1.13872 1.24220 1.26247 1.23459 0.91865 1.07029 0.99909 1.23101 0.95462 0.92337 0.98768 1.17765 0.88202 0.97756 0.91018 1.21031 1.19377 0.94323 1.19636 0.92228 1.24971 0.96198 0.98028 0.95170 1.69942 1.25957 1.35693 1.22138 0.86505 0.77430 0.85081 0.78501 1.20551 1.21281 1.19891 1.75130 1.05471 1.21581 1.09785 1.78375 1.20799 0.99816 1.08315 1.71934 0.98007 1.26333 1.21170 0.92249 0.92558 0.92062 0.91042 0.91940 0.92242 0.92481 0.89075 0.88397 0.84212 0.84266 0.79422 0.94195 0.94320 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.19 37.16 0.34 -0.67 16 2 C -0.09 -0.87 2.91 -90.62 -0.26 -1.13 16 3 C -0.15 -1.67 9.01 37.16 0.33 -1.34 16 4 C -0.03 -0.23 5.32 -27.88 -0.15 -0.38 16 5 C 0.18 2.15 6.66 -156.37 -1.04 1.11 16 6 N -0.38 -5.01 12.16 30.90 0.38 -4.63 16 7 O 0.09 1.10 11.31 18.09 0.20 1.31 16 8 C 0.16 1.87 7.89 -13.06 -0.10 1.76 16 9 C 0.22 2.10 7.08 -5.19 -0.04 2.06 16 10 N -0.32 -4.83 3.43 -62.44 -0.21 -5.05 16 11 C -0.08 -1.25 11.49 -17.05 -0.20 -1.45 16 12 C 0.04 0.86 6.44 -82.78 -0.53 0.33 16 13 C 0.09 2.32 5.55 -29.04 -0.16 2.16 16 14 C -0.50 -14.30 9.09 -34.44 -0.31 -14.62 16 15 H 0.06 1.72 7.74 -52.49 -0.41 1.32 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -26.31 13.29 55.43 0.74 -25.57 16 18 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 N -0.25 -5.85 12.40 33.29 0.41 -5.44 16 23 N -0.09 -1.87 12.93 60.35 0.78 -1.09 16 24 N -0.44 -5.70 10.89 -9.87 -0.11 -5.81 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.89 6.85 -51.93 -0.36 0.54 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.14 0.65 8.07 -51.93 -0.42 0.23 16 35 H 0.14 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.19 2.28 8.06 -52.49 -0.42 1.85 16 37 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.04 0.96 8.12 -51.93 -0.42 0.54 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 341.91 15.07 5.15 5.15 Total: -1.00 -34.82 341.91 -5.29 -40.11 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: -5.39 Total: -5.19 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -2.22 Total: -10.64 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: 1.98 Total: -47.59 kcal Atomic # 8 Polarization: 1.10 SS G_CDS: 0.20 Total: 1.31 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.82 -5.29 -40.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603204572.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.920 kcal (2) G-P(sol) polarization free energy of solvation -34.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.62 seconds