Wall clock time and date at job start Tue Mar 31 2020 06:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.50705 * 109.47390 * 184.99865 * 4 2 1 6 6 N 1.29952 * 126.28450 * 90.02239 * 5 4 2 7 7 O 1.21296 * 110.24822 * 179.97438 * 6 5 4 8 8 C 1.33647 * 109.81321 * 0.02562 * 7 6 5 9 9 C 1.50700 * 126.55001 * 179.97438 * 8 7 6 10 10 N 1.46503 * 109.47146 * 269.97350 * 9 8 7 11 11 C 1.35311 * 125.86798 * 124.99931 * 10 9 8 12 12 C 1.35346 * 106.17601 * 179.97438 * 11 10 9 13 13 C 1.50699 * 126.75259 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47038 * 125.00629 * 13 12 11 15 15 H 1.07996 * 120.00249 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99790 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00134 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99915 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46900 * 89.99667 * 18 16 14 20 20 H 1.48495 * 109.47212 * 209.99654 * 18 16 14 21 21 H 1.48503 * 109.47052 * 330.00071 * 18 16 14 22 22 N 1.33776 * 106.49927 * 0.02562 * 12 11 10 23 23 N 1.28635 * 108.87932 * 359.72848 * 22 12 11 24 24 N 1.31125 * 106.89480 * 359.76812 * 8 7 6 25 25 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 26 26 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 28 28 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 29 29 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 31 31 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 32 32 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 33 33 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 34 34 H 1.08995 * 109.47179 * 29.97495 * 9 8 7 35 35 H 1.08996 * 109.47105 * 149.97350 * 9 8 7 36 36 H 1.08002 * 126.91238 * 0.02645 * 11 10 9 37 37 H 1.09003 * 109.47258 * 245.00174 * 13 12 11 38 38 H 1.09001 * 109.47455 * 5.00032 * 13 12 11 39 39 H 0.96995 * 119.99750 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5419 -0.8294 -1.1891 6 7 4.2223 -1.8038 -0.6633 7 8 5.4116 -1.5937 -0.7755 8 6 5.6089 -0.4298 -1.4021 9 6 6.9388 0.1951 -1.7369 10 7 7.3679 1.0529 -0.6295 11 6 8.5462 0.9661 0.0300 12 6 8.5262 1.9419 0.9677 13 6 9.6126 2.2585 1.9630 14 6 10.0010 3.7092 1.8381 15 1 9.5106 4.3388 1.1105 16 6 10.9834 4.2323 2.6521 17 7 11.5810 3.4655 3.5377 18 14 11.4654 6.0304 2.4968 19 1 10.6235 6.8488 3.4060 20 1 12.8947 6.1933 2.8652 21 1 11.2611 6.4784 1.0958 22 7 7.3519 2.5694 0.8381 23 7 6.6911 2.0222 -0.1204 24 7 4.4243 0.0624 -1.6737 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6768 1.9562 0.8901 32 1 1.6053 -1.7198 -1.2953 33 1 1.7516 -0.1582 -2.1370 34 1 7.6787 -0.5891 -1.8968 35 1 6.8414 0.7929 -2.6430 36 1 9.3428 0.2607 -0.1552 37 1 9.2484 2.0655 2.9721 38 1 10.4816 1.6312 1.7642 39 1 12.2722 3.8334 4.1100 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603204572.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:52 Heat of formation + Delta-G solvation = 128.824520 kcal Electronic energy + Delta-G solvation = -22432.941400 eV Core-core repulsion = 18994.124097 eV Total energy + Delta-G solvation = -3438.817303 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -46.82105 -44.10511 -38.30682 -36.97240 -35.98350 -35.26028 -33.50804 -32.86856 -29.83708 -29.24916 -28.85819 -28.09730 -25.47509 -24.96797 -23.71834 -22.69259 -21.90142 -20.96291 -19.44464 -18.82464 -18.47475 -17.99276 -17.58908 -16.53243 -16.32045 -15.91720 -15.63510 -15.26745 -15.20520 -14.78757 -14.34193 -14.15180 -13.76372 -13.67970 -13.40226 -13.13357 -13.00116 -12.84645 -12.82115 -12.67872 -12.48845 -12.31915 -12.17153 -11.93452 -11.87513 -11.72938 -11.67282 -11.40840 -11.13721 -11.02952 -10.57558 -9.88664 -8.17547 -6.25740 -0.24105 0.61096 0.93906 1.41639 1.43586 1.51185 1.54289 1.70643 1.75530 2.45235 2.45799 2.86420 3.15731 3.46402 3.65114 3.78169 3.81837 3.91974 4.01465 4.15760 4.28201 4.42096 4.47373 4.53728 4.58364 4.67941 4.71054 4.77712 4.82643 4.91942 5.00418 5.17205 5.29166 5.31708 5.35758 5.43196 5.55211 5.68967 5.78590 6.23787 6.82958 6.94526 7.40968 7.65807 8.93331 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.023758 B = 0.003159 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.247414 B = 8861.724187 C = 9519.052475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 C -0.146 4.146 4 C -0.025 4.025 5 C 0.171 3.829 6 N -0.397 5.397 7 O 0.083 5.917 8 C 0.159 3.841 9 C 0.215 3.785 10 N -0.298 5.298 11 C -0.032 4.032 12 C -0.010 4.010 13 C 0.102 3.898 14 C -0.523 4.523 15 H 0.045 0.955 16 C 0.009 3.991 17 N -0.927 5.927 18 Si 0.960 3.040 19 H -0.279 1.279 20 H -0.274 1.274 21 H -0.269 1.269 22 N -0.303 5.303 23 N -0.113 5.113 24 N -0.461 5.461 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.026 0.974 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.199 0.801 35 H 0.167 0.833 36 H 0.241 0.759 37 H 0.005 0.995 38 H 0.040 0.960 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.884 -13.081 -15.033 25.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 C -0.203 4.203 4 C -0.064 4.064 5 C -0.101 4.101 6 N -0.104 5.104 7 O 0.024 5.976 8 C -0.064 4.064 9 C 0.094 3.906 10 N -0.095 5.095 11 C -0.181 4.181 12 C -0.147 4.147 13 C 0.063 3.937 14 C -0.561 4.561 15 H 0.064 0.936 16 C -0.189 4.189 17 N -0.567 5.567 18 Si 0.785 3.215 19 H -0.205 1.205 20 H -0.200 1.200 21 H -0.194 1.194 22 N -0.171 5.171 23 N -0.092 5.092 24 N -0.195 5.195 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.216 0.784 35 H 0.185 0.815 36 H 0.257 0.743 37 H 0.023 0.977 38 H 0.058 0.942 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.768 -12.718 -14.787 26.384 hybrid contribution 1.541 0.458 0.529 1.693 sum -16.227 -12.260 -14.258 24.837 Atomic orbital electron populations 1.21771 0.91831 1.02980 1.03001 1.21069 0.97987 0.95549 0.96162 1.21834 0.99758 0.96338 1.02380 1.20337 0.80892 1.04096 1.01037 1.26435 1.01502 0.86558 0.95631 1.74624 0.89505 1.24696 1.21582 1.85284 1.20280 1.35613 1.56466 1.28886 0.98315 0.85293 0.93882 1.20901 0.87764 0.94692 0.87254 1.47349 1.12917 1.23069 1.26193 1.23952 0.92497 1.04873 0.96741 1.22729 0.95290 0.95629 1.01062 1.17403 0.89361 0.96411 0.90531 1.21291 1.19446 0.95903 1.19464 0.93649 1.25769 0.96140 1.02259 0.94775 1.70033 1.26448 1.37494 1.22756 0.85528 0.77543 0.79907 0.78536 1.20466 1.19951 1.19405 1.75033 1.06531 1.23687 1.11802 1.78253 1.21197 1.01362 1.08353 1.71952 0.98783 1.26756 1.21987 0.91029 0.91187 0.92152 0.92892 0.95430 0.91210 0.92696 0.87234 0.86941 0.78387 0.81516 0.74256 0.97718 0.94172 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.19 71.98 0.66 -1.04 16 2 C -0.09 -1.59 2.91 -10.79 -0.03 -1.62 16 3 C -0.15 -3.29 9.01 71.98 0.65 -2.64 16 4 C -0.03 -0.42 5.32 29.85 0.16 -0.26 16 5 C 0.17 4.03 6.66 138.46 0.92 4.96 16 6 N -0.40 -10.20 12.16 -60.32 -0.73 -10.94 16 7 O 0.08 1.95 11.31 74.81 0.85 2.80 16 8 C 0.16 3.39 7.89 88.38 0.70 4.09 16 9 C 0.22 3.16 7.08 85.63 0.61 3.77 16 10 N -0.30 -8.39 3.43 -351.47 -1.20 -9.60 16 11 C -0.03 -0.97 11.49 83.49 0.96 -0.01 16 12 C -0.01 -0.44 6.44 41.59 0.27 -0.18 16 13 C 0.10 5.34 5.55 29.10 0.16 5.50 16 14 C -0.52 -30.37 9.09 25.60 0.23 -30.13 16 15 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 16 C 0.01 0.50 5.46 84.66 0.46 0.97 16 17 N -0.93 -55.10 13.29 21.45 0.28 -54.82 16 18 Si 0.96 45.22 29.54 68.60 2.03 47.25 16 19 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 22 N -0.30 -14.46 12.40 -48.60 -0.60 -15.06 16 23 N -0.11 -4.45 12.93 37.02 0.48 -3.97 16 24 N -0.46 -11.38 10.89 -303.20 -3.30 -14.68 16 25 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.03 0.80 6.85 -2.39 -0.02 0.78 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.11 1.42 8.14 -2.39 -0.02 1.41 16 33 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.20 0.61 8.07 -2.39 -0.02 0.59 16 35 H 0.17 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.24 4.56 8.06 -2.91 -0.02 4.54 16 37 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.04 2.03 8.12 -2.39 -0.02 2.02 16 39 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -80.49 341.91 4.59 -75.90 By element: Atomic # 1 Polarization: -1.34 SS G_CDS: 1.05 Total: -0.28 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: 5.75 Total: -16.60 kcal Atomic # 7 Polarization: -103.99 SS G_CDS: -5.08 Total: -109.07 kcal Atomic # 8 Polarization: 1.95 SS G_CDS: 0.85 Total: 2.80 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -80.49 4.59 -75.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603204572.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.720 kcal (2) G-P(sol) polarization free energy of solvation -80.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds